Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01020948001 Vitis vinifera HOM05D005441 ORTHO05D441280 2.2e-34 148.3 69 100.0
GSVIVG01020955001 Vitis vinifera HOM05D005441 ORTHO05D441382 2.3e-23 111.7 59 88.1
GSVIVG01033547001 Vitis vinifera HOM05D005441 ORTHO05D006879 8.4e-18 93.2 51 78.4
GSVIVG01033549001 Vitis vinifera HOM05D005441 ORTHO05D006879 4.8e-13 77.4 52 71.2
Prupe.7G050500 Prunus persica HOM05D005441 ORTHO05D006879 2.9e-10 68.2 52 57.7
Ciclev10007026m.g Citrus clementina HOM05D005441 ORTHO05D006879 4.2e-09 64.3 53 58.5
FvH4_6g24730 Fragaria vesca HOM05D005441 ORTHO05D006879 1.6e-08 62.4 53 56.6
FAN05G4498 Fragaria x ananassa HOM05D005441 ORTHO05D006879 1.6e-08 62.4 53 56.6
MD14G1080200 Malus domestica HOM05D005441 ORTHO05D006879 1.6e-08 62.4 52 51.9
Manes.08G054100 Manihot esculenta HOM05D005441 ORTHO05D006879 4.6e-08 60.8 51 54.9
RcHm_v2.0_Chr3g0484281 Rosa chinensis HOM05D005441 ORTHO05D006879 4.6e-08 60.8 52 53.8
Migut.J01709 Erythranthe guttata HOM05D005441 ORTHO05D006879 7.9e-08 60.1 52 53.8
Dinv39675 Davidia involucrata HOM05D005441 ORTHO05D006879 1.3e-07 59.3 52 53.8
PGR004G1247 Punica granatum HOM05D005441 ORTHO05D006879 1.3e-07 59.3 55 54.5
Cpa.g.sc120.4 Carica papaya HOM05D005441 ORTHO05D006879 1.8e-07 58.9 52 51.9
Gohir.A09G119900 Gossypium hirsutum HOM05D005441 ORTHO05D006879 1.8e-07 58.9 50 52.0
TPR.G13795 Trifolium pratense HOM05D005441 ORTHO05D006879 1.8e-07 58.9 47 63.8
Atru.chr1.1186 Acer truncatum HOM05D005441 ORTHO05D006879 2.3e-07 58.5 52 51.9
Eucgr.A02299 Eucalyptus grandis HOM05D005441 ORTHO05D006879 3.0e-07 58.2 52 53.8
QL07p005282 Quercus lobata HOM05D005441 ORTHO05D006879 3.0e-07 58.2 52 51.9
QL07p005564 Quercus lobata HOM05D005441 ORTHO05D006879 3.0e-07 58.2 52 51.9
Ciclev10005135m.g Citrus clementina HOM05D005441 ORTHO05D006879 5.1e-07 57.4 52 55.8
MD12G1085300 Malus domestica HOM05D005441 ORTHO05D006879 5.1e-07 57.4 50 50.0
Nn7g36437 Nelumbo nucifera HOM05D005441 ORTHO05D006879 5.1e-07 57.4 51 49.0
Cc06_g18310 Coffea canephora HOM05D005441 ORTHO05D006879 8.7e-07 56.6 52 50.0
Medtr1g051760 Medicago truncatula HOM05D005441 ORTHO05D006879 8.7e-07 56.6 46 56.5
arahy.Tifrunner.gnm1.ann1.I76ATH Arachis hypogaea HOM05D005441 ORTHO05D006879 1.5e-06 55.8 45 53.3
Eucgr.A02298 Eucalyptus grandis HOM05D005441 ORTHO05D006879 1.5e-06 55.8 51 51.0
Rhsim03G0030800 Rhododendron simsii HOM05D005441 ORTHO05D006879 1.5e-06 55.8 49 55.1
Thecc.05G145600 Theobroma cacao HOM05D005441 ORTHO05D006879 1.5e-06 55.8 52 48.1
QL05p004724 Quercus lobata HOM05D005441 ORTHO05D006879 1.9e-06 55.5 51 51.0
QL10p044609 Quercus lobata HOM05D005441 ORTHO05D006879 1.9e-06 55.5 51 51.0
CiPaw.09G041900 Carya illinoinensis HOM05D005441 ORTHO05D006879 2.5e-06 55.1 52 50.0
Glyma.02G192200 Glycine max HOM05D005441 ORTHO05D006879 2.5e-06 55.1 46 56.5
Lj3g0025341 Lotus japonicus HOM05D005441 ORTHO05D006879 3.3e-06 54.7 46 56.5
Potri.016G042500 Populus trichocarpa HOM05D005441 ORTHO05D006879 3.3e-06 54.7 52 51.9
vmacro21956 Vaccinium macrocarpon HOM05D005441 ORTHO05D006879 3.3e-06 54.7 51 47.1
CSS0036594 Camellia sinensis var. sinensis HOM05D005441 ORTHO05D006879 4.3e-06 54.3 52 48.1
Duzib106G1775 Durio zibethinus HOM05D005441 ORTHO05D006879 4.3e-06 54.3 51 49.0
MBI19_g22482_MAGBIO Magnolia biondii HOM05D005441 ORTHO05D006879 4.3e-06 54.3 52 51.9
QL05p004537 Quercus lobata HOM05D005441 ORTHO05D006879 4.3e-06 54.3 52 51.9
Ca_14293_v3 Cicer arietinum L. HOM05D005441 ORTHO05D006879 5.6e-06 53.9 48 56.2
Ca_30943_v3 Cicer arietinum L. HOM05D005441 ORTHO05D006879 5.6e-06 53.9 48 56.2
Cfa016756 Carpinus fangiana HOM05D005441 ORTHO05D006879 7.4e-06 53.5 52 48.1
QL07p005518 Quercus lobata HOM05D005441 ORTHO05D006879 7.4e-06 53.5 52 51.9
QL05p004486 Quercus lobata HOM05D005441 ORTHO05D006879 9.6e-06 53.1 52 51.9


User provided reference genes

Program Settings