Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01020835001 Vitis vinifera HOM05D004710 ORTHO05D005445 2.5e-273 944.9 501 100.0
QL93p2016_0028 Quercus lobata HOM05D004710 ORTHO05D005445 8.2e-232 807.0 507 85.0
QL08p045042 Quercus lobata HOM05D004710 ORTHO05D005445 1.8e-231 805.8 494 86.2
CiPaw.04G137800 Carya illinoinensis HOM05D004710 ORTHO05D005445 9.4e-228 793.5 502 85.5
Cfa023545 Carpinus fangiana HOM05D004710 ORTHO05D005445 6.1e-227 790.8 502 83.5
Ciclev10031314m.g Citrus clementina HOM05D004710 ORTHO05D005445 7.5e-225 783.9 501 83.6
Potri.002G057300 Populus trichocarpa HOM05D004710 ORTHO05D005445 3.7e-224 781.6 504 83.5
Prupe.3G177900 Prunus persica HOM05D004710 ORTHO05D005445 5.4e-223 777.7 502 84.1
Potri.005G205300 Populus trichocarpa HOM05D004710 ORTHO05D005445 1.6e-222 776.2 503 82.3
FvH4_6g38730 Fragaria vesca HOM05D004710 ORTHO05D005445 1.7e-221 772.7 502 81.9
CSS0019642 Camellia sinensis var. sinensis HOM05D004710 ORTHO05D005445 2.3e-221 772.3 501 83.8
CANSAT64G1857 Cannabis sativa HOM05D004710 ORTHO05D005445 1.9e-220 769.2 502 81.7
Cc05_g01390 Coffea canephora HOM05D004710 ORTHO05D005445 1.9e-220 769.2 502 81.5
Atru.chr6.2043 Acer truncatum HOM05D004710 ORTHO05D005445 3.6e-219 765.0 501 82.2
FAN05G2509 Fragaria x ananassa HOM05D004710 ORTHO05D005445 1.8e-218 762.7 522 79.3
TAR624G0695 Trochodendron aralioides HOM05D004710 ORTHO05D005445 2.3e-218 762.3 500 82.0
Rhsim12G0010700 Rhododendron simsii HOM05D004710 ORTHO05D005445 1.2e-217 760.0 503 81.9
COL.COLO4_38396 Corchorus olitorius HOM05D004710 ORTHO05D005445 2.0e-217 759.2 503 82.5
FAN02G0505 Fragaria x ananassa HOM05D004710 ORTHO05D005445 7.5e-217 757.3 532 77.6
TWI59G0681 Tripterygium wilfordii HOM05D004710 ORTHO05D005445 1.3e-216 756.5 502 81.5
vmacro08738 Vaccinium macrocarpon HOM05D004710 ORTHO05D005445 1.7e-216 756.1 503 81.5
Thecc.01G168300 Theobroma cacao HOM05D004710 ORTHO05D005445 9.2e-215 750.4 506 81.6
MD17G1134500 Malus domestica HOM05D004710 ORTHO05D005445 5.9e-214 747.7 499 81.2
FAN14G4495 Fragaria x ananassa HOM05D004710 ORTHO05D005445 3.8e-213 745.0 511 79.1
Glyma.02G284400 Glycine max HOM05D004710 ORTHO05D005445 8.6e-213 743.8 494 81.6
Eucgr.A02027 Eucalyptus grandis HOM05D004710 ORTHO05D005445 1.5e-212 743.0 501 79.0
Glyma.14G030600 Glycine max HOM05D004710 ORTHO05D005445 2.5e-212 742.3 494 81.4
TAR625G1186 Trochodendron aralioides HOM05D004710 ORTHO05D005445 7.3e-212 740.7 500 79.8
Nn7g38035 Nelumbo nucifera HOM05D004710 ORTHO05D005445 1.2e-211 740.0 495 79.8
Gohir.A08G051500 Gossypium hirsutum HOM05D004710 ORTHO05D005445 4.7e-211 738.0 505 80.6
Duzib211G0680 Durio zibethinus HOM05D004710 ORTHO05D005445 1.0e-210 736.9 495 81.8
arahy.Tifrunner.gnm1.ann1.3YJ1U6 Arachis hypogaea HOM05D004710 ORTHO05D005445 1.4e-210 736.5 502 79.7
Duzib133G0803 Durio zibethinus HOM05D004710 ORTHO05D005445 1.4e-210 736.5 495 81.2
PGR042G2540 Punica granatum HOM05D004710 ORTHO05D005445 1.8e-210 736.1 504 80.4
RcHm_v2.0_Chr2g0152261 Rosa chinensis HOM05D004710 ORTHO05D005445 4.0e-210 734.9 502 79.3
Gohir.D08G061300 Gossypium hirsutum HOM05D004710 ORTHO05D005445 5.2e-210 734.6 505 80.2
arahy.Tifrunner.gnm1.ann1.BVM079 Arachis hypogaea HOM05D004710 ORTHO05D005445 3.4e-209 731.9 502 79.3
Cpa.g.sc50.115 Carica papaya HOM05D004710 ORTHO05D005445 5.8e-209 731.1 505 79.2
Gorai.004G063400 Gossypium raimondii HOM05D004710 ORTHO05D005445 2.9e-208 728.8 505 79.8
Phvul.008G194500 Phaseolus vulgaris HOM05D004710 ORTHO05D005445 3.7e-208 728.4 494 80.4
Sabra05G0156000 Salix brachista HOM05D004710 ORTHO05D005445 4.9e-208 728.0 526 77.6
ClCG07G010740 Citrullus lanatus HOM05D004710 ORTHO05D005445 8.3e-208 727.2 501 78.2
MELO3C016183.2 Cucumis melo HOM05D004710 ORTHO05D005445 2.4e-207 725.7 496 78.6
CsaV3_4G007580 Cucumis sativus L. HOM05D004710 ORTHO05D005445 2.4e-207 725.7 502 78.5
Medtr5g091000 Medicago truncatula HOM05D004710 ORTHO05D005445 2.4e-207 725.7 498 80.1
Psat2g017280 Pisum sativum HOM05D004710 ORTHO05D005445 3.2e-207 725.3 499 79.8
MSTRG.14902 Avicennia marina HOM05D004710 ORTHO05D005445 7.0e-207 724.2 496 77.4
Hma1.2p1_0073F.1_g038510 Hydrangea macrophylla HOM05D004710 ORTHO05D005445 9.2e-207 723.8 485 82.7
TPR.G10151 Trifolium pratense HOM05D004710 ORTHO05D005445 1.2e-206 723.4 498 79.9
Aqoxy4G00042 Aquilegia oxysepala HOM05D004710 ORTHO05D005445 1.6e-206 723.0 503 76.9
MD09G1148200 Malus domestica HOM05D004710 ORTHO05D005445 3.5e-206 721.8 471 83.7
Lalb_Chr10g0106551 Lupinus albus HOM05D004710 ORTHO05D005445 4.6e-206 721.5 502 79.1
Gorai.001G211100 Gossypium raimondii HOM05D004710 ORTHO05D005445 3.0e-205 718.8 505 78.4
Sabra02G0046700 Salix brachista HOM05D004710 ORTHO05D005445 5.0e-205 718.0 492 80.5
Gohir.A07G182700 Gossypium hirsutum HOM05D004710 ORTHO05D005445 1.1e-204 716.8 505 78.0
Ca_06262_v3 Cicer arietinum L. HOM05D004710 ORTHO05D005445 1.5e-204 716.5 497 79.1
VMungo0647G1334 Vigna mungo HOM05D004710 ORTHO05D005445 2.5e-204 715.7 480 81.2
Actinidia11220 Actinidia chinensis HOM05D004710 ORTHO05D005445 7.3e-204 714.1 502 78.1
Sopen05g017300 Solanum pennellii HOM05D004710 ORTHO05D005445 4.0e-202 708.4 503 77.1
Sc15g0002190 Simmondsia chinensis HOM05D004710 ORTHO05D005445 8.9e-202 707.2 495 77.2
Sed0010176 Sechium edule HOM05D004710 ORTHO05D005445 3.4e-201 705.3 502 77.1
Sed0002024 Sechium edule HOM05D004710 ORTHO05D005445 7.0e-199 697.6 496 76.8
LjContig00049g0017244 Lotus japonicus HOM05D004710 ORTHO05D005445 2.7e-198 695.7 496 76.8
SGA_v2.0_scaffold73G24477 Striga asiatica HOM05D004710 ORTHO05D005445 6.6e-197 691.0 494 74.9
Lalb_Chr04g0248931 Lupinus albus HOM05D004710 ORTHO05D005445 9.5e-196 687.2 501 75.8
Migut.M00073 Erythranthe guttata HOM05D004710 ORTHO05D005445 3.6e-195 685.3 504 74.6
Manes.01G130800 Manihot esculenta HOM05D004710 ORTHO05D005445 4.0e-194 681.8 442 82.1
THA.LOC104800818 Tarenaya hassleriana HOM05D004710 ORTHO05D005445 5.2e-194 681.4 509 74.5
Peaxi162Scf00416g00116 Petunia axillaris HOM05D004710 ORTHO05D005445 6.8e-194 681.0 504 76.8
EL10Ac9g22830 Beta vulgaris HOM05D004710 ORTHO05D005445 2.2e-192 676.0 514 72.8
Lj6g0000252 Lotus japonicus HOM05D004710 ORTHO05D005445 3.7e-192 675.2 487 76.2
FAN09G1050 Fragaria x ananassa HOM05D004710 ORTHO05D005445 8.3e-192 674.1 524 72.9
Lj6g0021308 Lotus japonicus HOM05D004710 ORTHO05D005445 1.4e-191 673.3 485 75.9
ECA246G2799 Erigeron canadensis HOM05D004710 ORTHO05D005445 1.2e-190 670.2 513 71.7
DCAR_013324 Daucus carota HOM05D004710 ORTHO05D005445 6.0e-190 667.9 502 73.9
Gohir.D07G189500 Gossypium hirsutum HOM05D004710 ORTHO05D005445 1.3e-189 666.8 473 78.4
HanXRQChr06g0171641 Helianthus annuus HOM05D004710 ORTHO05D005445 8.6e-189 664.1 506 71.9
Hund08425 Selenicereus undatus HOM05D004710 ORTHO05D005445 2.5e-188 662.5 495 73.5
Actinidia06121 Actinidia chinensis HOM05D004710 ORTHO05D005445 5.6e-188 661.4 421 84.8
Eucgr.K01227 Eucalyptus grandis HOM05D004710 ORTHO05D005445 5.6e-188 661.4 500 74.6
Sp4g13350 Schrenkiella parvula HOM05D004710 ORTHO05D005445 3.6e-187 658.7 512 73.0
Os03g0666200 Oryza sativa ssp. japonica HOM05D004710 ORTHO05D005445 8.1e-187 657.5 496 71.0
Aa31LG5G6040 Aethionema arabicum HOM05D004710 ORTHO05D005445 1.4e-186 656.8 515 70.9
AT2G30880 Arabidopsis thaliana HOM05D004710 ORTHO05D005445 1.4e-186 656.8 510 72.4
A04p23580 Brassica napus HOM05D004710 ORTHO05D005445 4.0e-186 655.2 508 71.9
CARHR124360 Cardamine hirsuta HOM05D004710 ORTHO05D005445 4.0e-186 655.2 510 71.8
Carub.0004s1208 Capsella rubella HOM05D004710 ORTHO05D005445 5.2e-186 654.8 510 71.8
Thhalv10016548m.g Eutrema salsugineum HOM05D004710 ORTHO05D005445 5.2e-186 654.8 511 72.0
HanXRQChr17g0541191 Helianthus annuus HOM05D004710 ORTHO05D005445 5.2e-186 654.8 511 71.6
PSO675G4395 Papaver somniferum HOM05D004710 ORTHO05D005445 3.4e-185 652.1 507 72.4
AL4G25830 Arabidopsis lyrata HOM05D004710 ORTHO05D005445 1.7e-184 649.8 510 71.4
Zm00001eb065510 Zea mays HOM05D004710 ORTHO05D005445 6.4e-184 647.9 504 68.3
ATR0763G198 Amborella trichopoda HOM05D004710 ORTHO05D005445 7.1e-183 644.4 504 70.4
BcaB06g28390 Brassica carinata HOM05D004710 ORTHO05D005445 1.2e-182 643.7 512 70.9
PSO675G5558 Papaver somniferum HOM05D004710 ORTHO05D005445 2.7e-182 642.5 508 71.7
HPP92_018652 Vanilla planifolia HOM05D004710 ORTHO05D005445 5.6e-180 634.8 501 67.9
BcaB06g28457 Brassica carinata HOM05D004710 ORTHO05D005445 1.6e-179 633.3 506 70.2
BolC4t27504H Brassica oleracea HOM05D004710 ORTHO05D005445 1.6e-179 633.3 506 70.2
BraA04t17884Z Brassica rapa HOM05D004710 ORTHO05D005445 8.1e-179 630.9 508 69.9
C04p60020 Brassica napus HOM05D004710 ORTHO05D005445 1.5e-177 626.7 504 69.8
Lsat_1_v5_gn_3_35160 Lactuca sativa HOM05D004710 ORTHO05D005445 5.4e-175 618.2 507 68.8
Solyc05g021100.2 Solanum lycopersicum HOM05D004710 ORTHO05D005445 1.0e-173 614.0 443 76.3
Lj1C589T0 Lonicera japonica HOM05D004710 ORTHO05D005445 9.6e-172 607.4 534 68.0
Nitab4.5_0003177g0030 Nicotiana tabacum HOM05D004710 ORTHO05D005445 5.4e-167 591.7 390 81.0
AUR62015127 Chenopodium quinoa HOM05D004710 ORTHO05D005445 3.0e-165 585.9 493 68.4
Ah.01g013580 Amaranthus hybridus HOM05D004710 ORTHO05D005445 2.5e-159 566.2 481 67.6
Gohir.1Z049561 Gossypium hirsutum HOM05D004710 ORTHO05D005445 3.4e-153 545.8 355 81.4
Zm00001eb117740 Zea mays HOM05D004710 ORTHO05D005445 4.2e-151 538.9 482 61.4
SGA_v2.0_scaffold181G39713 Striga asiatica HOM05D004710 ORTHO05D005445 1.1e-148 530.8 485 64.7
PGR142G3117 Punica granatum HOM05D004710 ORTHO05D005445 4.8e-147 525.4 502 60.6
MBI18_g07571_MAGBIO Magnolia biondii HOM05D004710 ORTHO05D005445 1.0e-144 517.7 453 66.2
BcaB01g04076 Brassica carinata HOM05D004710 ORTHO05D005445 6.3e-139 498.4 505 60.2
CAN.G237.1 Capsicum annuum HOM05D004710 ORTHO05D005445 1.0e-136 491.1 377 75.1
Zm00001eb217790 Zea mays HOM05D004710 ORTHO05D005445 1.9e-135 486.9 403 65.8
Nitab4.5_0000019g0200 Nicotiana tabacum HOM05D004710 ORTHO05D005445 7.2e-135 485.0 403 70.0
SEGI_28206 Sequoiadendron giganteum HOM05D004710 ORTHO05D005445 9.4e-127 458.0 386 63.2
BcaC01g06018 Brassica carinata HOM05D004710 ORTHO05D005445 9.7e-124 448.0 491 58.7
C03p20350 Brassica napus HOM05D004710 ORTHO05D005445 1.6e-113 414.1 383 64.8
BolC3t14413H Brassica oleracea HOM05D004710 ORTHO05D005445 1.6e-113 414.1 383 64.8
Dinv09874 Davidia involucrata HOM05D004710 ORTHO05D005445 6.8e-101 372.1 206 90.3
Oeu040170.3 Olea europaea HOM05D004710 ORTHO05D005445 2.2e-99 367.1 425 54.1
Haze_13560 Corylus avellana HOM05D004710 ORTHO05D005445 1.0e-96 358.2 253 79.4
Mapoly0039s0099 Marchantia polymorpha HOM05D004710 ORTHO05D005445 6.1e-94 349.0 436 47.7
SMO169G0289 Selaginella moellendorffii HOM05D004710 ORTHO05D005445 1.3e-91 341.3 324 57.1
Pp3c23_16670 Physcomitrium patens HOM05D004710 ORTHO05D005445 2.3e-88 330.5 446 48.0
FAN06G4649 Fragaria x ananassa HOM05D004710 ORTHO05D005445 1.7e-83 314.3 219 76.7
Aa31LG1G7230 Aethionema arabicum HOM05D004710 ORTHO05D005445 6.0e-81 305.8 221 73.8
AagrBONN_evm.TU.Sc2ySwM_228.2862 Anthoceros agrestis HOM05D004710 ORTHO05D005445 2.5e-79 300.4 406 44.6
AUR62017588 Chenopodium quinoa HOM05D004710 ORTHO05D005445 2.4e-66 257.3 202 72.8
Pp3c13_22640 Physcomitrium patens HOM05D004710 ORTHO05D005445 3.1e-61 240.4 408 40.4
MBI18_g48251_MAGBIO Magnolia biondii HOM05D004710 ORTHO05D005445 4.4e-60 236.5 276 54.7
CBR_g48423 Chara braunii HOM05D004710 ORTHO05D005445 1.2e-57 228.4 399 38.3
Dinv09873 Davidia involucrata HOM05D004710 ORTHO05D005445 3.6e-54 216.9 133 88.7
Pp3c26_520 Physcomitrium patens HOM05D004710 ORTHO05D005445 3.1e-53 213.8 419 35.6
FAN18G0865 Fragaria x ananassa HOM05D004710 ORTHO05D005445 3.9e-48 196.8 164 67.1
A03p17240 Brassica napus HOM05D004710 ORTHO05D005445 4.0e-45 186.8 292 47.3
FAN08G2380 Fragaria x ananassa HOM05D004710 ORTHO05D005445 1.5e-39 168.3 96 85.4
Os07g0138100 Oryza sativa ssp. japonica HOM05D004710 ORTHO05D005445 6.2e-38 162.9 106 70.8
Haze_13559 Corylus avellana HOM05D004710 ORTHO05D005445 2.0e-36 157.9 91 86.8
HPP92_018658 Vanilla planifolia HOM05D004710 ORTHO05D005445 1.9e-31 141.4 87 80.5
Aa31LG1G7240 Aethionema arabicum HOM05D004710 ORTHO05D005445 5.9e-28 129.8 146 56.2
AUR62017587 Chenopodium quinoa HOM05D004710 ORTHO05D005445 9.4e-26 122.5 96 63.5
SHI10530 Sapria himalayana HOM05D000906 ORTHO05D000713 1.5e-23 115.2 185 42.7
BraA03t10998Z Brassica rapa HOM05D004710 ORTHO05D005445 1.1e-21 109.0 122 54.1
Lj6g0000199 Lotus japonicus HOM05D004710 ORTHO05D005445 1.4e-13 82.0 65 66.2
BraA03t10997Z Brassica rapa HOM05D004710 ORTHO05D005445 2.4e-13 81.3 71 66.2
Os05g0128700 Oryza sativa ssp. japonica HOM05D004710 ORTHO05D005445 2.0e-12 78.2 60 63.3
Os12g0505950 Oryza sativa ssp. japonica HOM05D004710 ORTHO05D005445 2.0e-12 78.2 60 63.3
Os05g0153901 Oryza sativa ssp. japonica HOM05D004710 ORTHO05D005445 1.9e-10 71.6 60 58.3
Zm00001eb299690 Zea mays HOM05D004710 ORTHO05D005445 6.7e-08 63.2 105 41.9
MCO09G271 Micromonas commoda HOM05D004710 ORTHO05D005445 1.1e-07 62.4 93 36.6
MBI18_g29058_MAGBIO Magnolia biondii HOM05D004710 ORTHO05D005445 1.3e-06 58.9 190 32.6
Lj1A589T9 Lonicera japonica HOM05D004710 ORTHO05D005445 4.8e-06 57.0 50 70.0
Solyc05g150127.1 Solanum lycopersicum HOM05D004710 ORTHO05D005445 4.8e-06 57.0 31 90.3


User provided reference genes

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