Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01020797001 Vitis vinifera HOM05D007170 ORTHO05D009243 0.0e+00 2910.9 1508 100.0
TAR626G1158 Trochodendron aralioides HOM05D007170 ORTHO05D009243 0.0e+00 1929.1 1521 67.8
Cfa020492 Carpinus fangiana HOM05D007170 ORTHO05D009243 0.0e+00 1922.1 1517 67.2
Haze_09546 Corylus avellana HOM05D007170 ORTHO05D009243 0.0e+00 1858.6 1499 66.2
Actinidia06806 Actinidia chinensis HOM05D007170 ORTHO05D009243 0.0e+00 1835.1 1519 65.1
Prupe.3G191100 Prunus persica HOM05D007170 ORTHO05D009243 0.0e+00 1834.7 1501 65.0
Potri.006G023500 Populus trichocarpa HOM05D007170 ORTHO05D009243 0.0e+00 1825.8 1518 65.5
RcHm_v2.0_Chr2g0154431 Rosa chinensis HOM05D007170 ORTHO05D009243 0.0e+00 1820.4 1455 65.9
Sabra06G0017000 Salix brachista HOM05D007170 ORTHO05D009243 0.0e+00 1809.3 1518 64.2
CANSAT64G1590 Cannabis sativa HOM05D007170 ORTHO05D009243 0.0e+00 1805.0 1518 63.7
MD09G1135500 Malus domestica HOM05D007170 ORTHO05D009243 0.0e+00 1797.7 1496 63.9
FvH4_6g39900 Fragaria vesca HOM05D007170 ORTHO05D009243 0.0e+00 1793.5 1428 65.6
Atru.chr8.950 Acer truncatum HOM05D007170 ORTHO05D009243 0.0e+00 1790.0 1518 64.0
Nn3g20634 Nelumbo nucifera HOM05D007170 ORTHO05D009243 0.0e+00 1787.7 1523 63.8
CiPaw.03G198500 Carya illinoinensis HOM05D007170 ORTHO05D009243 0.0e+00 1786.5 1426 67.0
FAN14G4936 Fragaria x ananassa HOM05D007170 ORTHO05D009243 0.0e+00 1771.5 1506 63.5
Duzib138G0290 Durio zibethinus HOM05D007170 ORTHO05D009243 0.0e+00 1770.0 1506 63.3
FAN02G4004 Fragaria x ananassa HOM05D007170 ORTHO05D009243 0.0e+00 1752.6 1518 62.8
Gohir.D07G192100 Gossypium hirsutum HOM05D007170 ORTHO05D009243 0.0e+00 1739.5 1484 63.1
Gorai.001G214900 Gossypium raimondii HOM05D007170 ORTHO05D009243 0.0e+00 1734.9 1484 63.2
Manes.09G075018 Manihot esculenta HOM05D007170 ORTHO05D009243 0.0e+00 1728.8 1532 60.6
Ciclev10010909m.g Citrus clementina HOM05D007170 ORTHO05D009243 0.0e+00 1706.8 1428 64.1
PGR031G3275 Punica granatum HOM05D007170 ORTHO05D009243 0.0e+00 1686.8 1511 60.2
Thecc.01G177100 Theobroma cacao HOM05D007170 ORTHO05D009243 0.0e+00 1674.1 1394 64.1
MBI02_g15149_MAGBIO Magnolia biondii HOM05D007170 ORTHO05D009243 0.0e+00 1669.1 1506 60.2
DCAR_006644 Daucus carota HOM05D007170 ORTHO05D009243 0.0e+00 1628.2 1527 58.3
Eucgr.A00891 Eucalyptus grandis HOM05D007170 ORTHO05D009243 0.0e+00 1620.9 1520 59.3
Aqoxy3G00362 Aquilegia oxysepala HOM05D007170 ORTHO05D009243 0.0e+00 1604.3 1466 60.6
PSO541G2476 Papaver somniferum HOM05D007170 ORTHO05D009243 0.0e+00 1595.5 1525 57.2
Sopen01g040790 Solanum pennellii HOM05D007170 ORTHO05D009243 0.0e+00 1585.9 1511 57.2
Nitab4.5_0002247g0080 Nicotiana tabacum HOM05D007170 ORTHO05D009243 0.0e+00 1585.5 1551 57.3
PSO675G2674 Papaver somniferum HOM05D007170 ORTHO05D009243 0.0e+00 1582.0 1532 56.7
CSS0034103 Camellia sinensis var. sinensis HOM05D007170 ORTHO05D009243 0.0e+00 1580.1 1221 67.7
Solyc01g097110.2 Solanum lycopersicum HOM05D007170 ORTHO05D009243 0.0e+00 1578.5 1511 57.0
Cc02_g31000 Coffea canephora HOM05D007170 ORTHO05D009243 0.0e+00 1570.4 1448 59.2
Peaxi162Scf00647g00012 Petunia axillaris HOM05D007170 ORTHO05D009243 0.0e+00 1567.0 1562 56.1
Sc07g0002130 Simmondsia chinensis HOM05D007170 ORTHO05D009243 0.0e+00 1553.5 1406 58.7
Lsat_1_v5_gn_2_66140 Lactuca sativa HOM05D007170 ORTHO05D009243 0.0e+00 1531.9 1508 56.8
BcaB04g18275 Brassica carinata HOM05D007170 ORTHO05D009243 0.0e+00 1530.8 1470 57.0
HanXRQChr10g0314771 Helianthus annuus HOM05D007170 ORTHO05D009243 0.0e+00 1527.7 1456 57.8
AL7G40850 Arabidopsis lyrata HOM05D007170 ORTHO05D009243 0.0e+00 1522.7 1472 57.3
AT4G14970 Arabidopsis thaliana HOM05D007170 ORTHO05D009243 0.0e+00 1521.1 1471 57.3
A08p11580 Brassica napus HOM05D007170 ORTHO05D009243 0.0e+00 1521.1 1467 56.9
BraA08t33150Z Brassica rapa HOM05D007170 ORTHO05D009243 0.0e+00 1519.6 1467 56.9
BolC8t48255H Brassica oleracea HOM05D007170 ORTHO05D009243 0.0e+00 1511.5 1487 56.2
Nitab4.5_0005905g0020 Nicotiana tabacum HOM05D007170 ORTHO05D009243 0.0e+00 1506.5 1553 54.8
BcaC07g37864 Brassica carinata HOM05D007170 ORTHO05D009243 0.0e+00 1496.5 1471 56.3
Thhalv10024215m.g Eutrema salsugineum HOM05D007170 ORTHO05D009243 0.0e+00 1483.4 1466 56.1
Oeu038464.1 Olea europaea HOM05D007170 ORTHO05D009243 0.0e+00 1462.2 1569 52.8
ATR1098G002 Amborella trichopoda HOM05D007170 ORTHO05D009243 0.0e+00 1456.8 1447 54.5
SalBow8G4071 Salvia bowleyana HOM05D007170 ORTHO05D009243 0.0e+00 1439.9 1574 52.0
SGA_v2.0_scaffold172G38980 Striga asiatica HOM05D007170 ORTHO05D009243 0.0e+00 1415.2 1587 51.4
Lj7A482G28 Lonicera japonica HOM05D007170 ORTHO05D009243 0.0e+00 1377.1 1363 57.6
Cpa.g.sc8.299 Carica papaya HOM05D007170 ORTHO05D009243 0.0e+00 1376.3 1464 54.6
ECA238G4341 Erigeron canadensis HOM05D007170 ORTHO05D009243 0.0e+00 1335.1 1346 56.6
CSS0006494 Camellia sinensis var. sinensis HOM05D007170 ORTHO05D009243 0.0e+00 1164.4 967 63.4
Migut.B01114 Erythranthe guttata HOM05D007170 ORTHO05D009243 0.0e+00 1127.5 1235 52.1
CSS0002264 Camellia sinensis var. sinensis HOM05D007170 ORTHO05D009243 0.0e+00 1125.5 967 61.7
Zm00001eb117500 Zea mays HOM05D007170 ORTHO05D009243 0.0e+00 1090.5 1263 49.6
SEGI_23823 Sequoiadendron giganteum HOM05D007170 ORTHO05D009243 2.0e-305 1053.1 1236 48.2
Dinv20277 Davidia involucrata HOM05D007170 ORTHO05D009243 3.2e-303 1045.8 826 70.3
Gohir.A07G185500 Gossypium hirsutum HOM05D007170 ORTHO05D009243 1.2e-289 1000.7 918 59.7
Mapoly0001s0378 Marchantia polymorpha HOM05D007170 ORTHO05D009243 2.8e-283 979.5 1484 41.0
Os07g0154400 Oryza sativa ssp. japonica HOM05D007170 ORTHO05D009243 1.2e-278 964.1 1057 51.0
Pp3c3_20180 Physcomitrium patens HOM05D007170 ORTHO05D009243 1.8e-277 960.3 1462 39.4
Hma1.2p1_0892F.1_g233440 Hydrangea macrophylla HOM05D007170 ORTHO05D009243 1.8e-229 800.8 549 75.6
Dinv20276 Davidia involucrata HOM05D007170 ORTHO05D009243 8.3e-227 792.0 639 65.3
AagrBONN_evm.TU.Sc2ySwM_344.1322 Anthoceros agrestis HOM05D007170 ORTHO05D009243 5.0e-200 703.0 1216 36.9
CAN.G134.71 Capsicum annuum HOM05D007170 ORTHO05D009243 6.2e-198 696.0 534 68.0
HPP92_019550 Vanilla planifolia HOM05D007170 ORTHO05D009243 2.4e-194 684.1 672 56.2
HPP92_019551 Vanilla planifolia HOM05D007170 ORTHO05D009243 1.0e-184 652.1 747 49.1
CARHR221630 Cardamine hirsuta HOM05D007170 ORTHO05D009243 2.9e-155 554.3 403 70.5
CBR_g3147 Chara braunii HOM05D007170 ORTHO05D009243 5.1e-152 543.5 965 35.5
CAN.G134.69 Capsicum annuum HOM05D007170 ORTHO05D009243 2.2e-131 474.9 718 42.9
Gohir.A07G185533 Gossypium hirsutum HOM05D007170 ORTHO05D009243 2.2e-78 298.9 207 74.4
Dinv20273 Davidia involucrata HOM05D007170 ORTHO05D009243 1.3e-75 289.7 430 44.2
CARHR221660 Cardamine hirsuta HOM05D007170 ORTHO05D009243 4.9e-70 271.2 321 47.7
CARHR221670 Cardamine hirsuta HOM05D007170 ORTHO05D009243 7.1e-61 240.7 193 65.3
COL.COLO4_06563 Corchorus olitorius HOM05D007170 ORTHO05D009243 3.0e-51 208.8 146 74.0
CBR_g54165 Chara braunii HOM05D000019 ORTHO05D000048 3.1e-48 198.7 271 41.3
SEGI_21897 Sequoiadendron giganteum HOM05D007170 ORTHO05D009243 1.3e-46 193.4 227 48.5
CDE07G1176 Ceratophyllum demersum HOM05D007170 ORTHO05D009243 6.0e-44 184.5 149 64.4
Zm00001eb046090 Zea mays HOM05D007170 ORTHO05D009243 3.4e-39 168.7 221 42.1
Dinv20272 Davidia involucrata HOM05D007170 ORTHO05D009243 1.5e-31 143.3 121 64.5
QL08p022040 Quercus lobata HOM05D007170 ORTHO05D009243 1.6e-28 133.3 111 61.3
CARHR221640 Cardamine hirsuta HOM05D007170 ORTHO05D009243 1.4e-27 130.2 143 49.0
Cpa.g.sc8.300 Carica papaya HOM05D007170 ORTHO05D009243 6.7e-27 127.9 97 61.9
COL.COLO4_06564 Corchorus olitorius HOM05D007170 ORTHO05D009243 3.1e-24 119.0 133 53.4
Zm00001eb031530 Zea mays HOM05D007170 ORTHO05D009243 3.1e-24 119.0 111 50.5
Zm00001eb010760 Zea mays HOM05D007170 ORTHO05D009243 3.4e-23 115.5 111 49.5
Zm00001eb442000 Zea mays HOM05D007170 ORTHO05D009243 3.4e-23 115.5 111 49.5
CARHR221650 Cardamine hirsuta HOM05D007170 ORTHO05D009243 1.6e-20 106.7 200 42.5
QL02p039588 Quercus lobata HOM05D007170 ORTHO05D009243 4.7e-20 105.1 146 46.6
GSVIVG01038387001 Vitis vinifera HOM05D007170 ORTHO05D009243 2.2e-17 96.3 52 90.4
MBI08_g17991_MAGBIO Magnolia biondii HOM05D007170 ORTHO05D009243 4.8e-17 95.1 83 60.2
CDE07G1841 Ceratophyllum demersum HOM05D007170 ORTHO05D009243 2.4e-16 92.8 301 25.9
Carub.0007s2712 Capsella rubella HOM05D007170 ORTHO05D009243 9.1e-16 90.9 69 63.8
Lj7A482T28 Lonicera japonica HOM05D007170 ORTHO05D009243 4.2e-13 82.0 121 46.3
Zm00001eb008220 Zea mays HOM05D007170 ORTHO05D009243 4.2e-13 82.0 118 38.1
GSVIVG01038403001 Vitis vinifera HOM05D007170 ORTHO05D009243 2.7e-12 79.3 40 92.5
Cre10.g453650 Chlamydomonas reinhardtii HOM05D007170 ORTHO05D009243 8.2e-09 67.8 262 24.0
C03p18330 Brassica napus HOM05D007170 ORTHO05D041508 2.6e-07 62.8 46 63.0
Gohir.A05G055800 Gossypium hirsutum HOM05D003337 ORTHO05D003808 3.5e-07 62.4 401 21.7
Zm00001eb019760 Zea mays HOM05D007170 ORTHO05D009243 4.5e-07 62.0 85 38.8
A04p19680 Brassica napus HOM05D003337 ORTHO05D003808 7.7e-07 61.2 372 23.1
BraA04t17558Z Brassica rapa HOM05D003337 ORTHO05D003808 7.7e-07 61.2 372 23.1
Lalb_Chr08g0244191 Lupinus albus HOM05D003337 ORTHO05D003808 1.0e-06 60.8 356 21.6
Gohir.D05G057900 Gossypium hirsutum HOM05D003337 ORTHO05D003808 1.3e-06 60.5 397 21.7
COL.COLO4_18879 Corchorus olitorius HOM05D003337 ORTHO05D003808 2.2e-06 59.7 397 23.2
Gorai.009G059000 Gossypium raimondii HOM05D003337 ORTHO05D003808 2.2e-06 59.7 397 21.7
TAR365G0197 Trochodendron aralioides HOM05D000751 ORTHO05D000889 2.9e-06 59.3 45 66.7
MBI08_g46642_MAGBIO Magnolia biondii HOM05D007170 ORTHO05D002061 5.0e-06 58.5 51 60.8
Mapoly0008s0250 Marchantia polymorpha HOM05D003337 ORTHO05D003808 6.5e-06 58.2 419 20.8
DCAR_001543 Daucus carota HOM05D003337 ORTHO05D003808 8.5e-06 57.8 395 21.0


User provided reference genes

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