Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01020550001 Vitis vinifera HOM05D008409 ORTHO05D010483 1.5e-83 312.8 152 100.0
QL08p038864 Quercus lobata HOM05D008409 ORTHO05D010483 5.3e-65 251.1 151 80.1
Actinidia11031 Actinidia chinensis HOM05D008409 ORTHO05D010483 6.9e-65 250.8 150 79.3
Atru.chr6.2992 Acer truncatum HOM05D008409 ORTHO05D010483 1.5e-64 249.6 150 79.3
TAR627G0101 Trochodendron aralioides HOM05D008409 ORTHO05D010483 4.5e-64 248.1 145 82.1
Potri.013G131000 Populus trichocarpa HOM05D008409 ORTHO05D010483 5.9e-64 247.7 150 77.3
Haze_13167 Corylus avellana HOM05D008409 ORTHO05D010483 1.3e-63 246.5 150 78.7
CiPaw.04G126300 Carya illinoinensis HOM05D008409 ORTHO05D010483 2.2e-63 245.7 150 78.0
Nn1g06548 Nelumbo nucifera HOM05D008409 ORTHO05D010483 5.0e-63 244.6 148 77.0
Thecc.02G180200 Theobroma cacao HOM05D008409 ORTHO05D010483 1.4e-62 243.0 150 78.7
Manes.12G089218 Manihot esculenta HOM05D008409 ORTHO05D010483 4.2e-62 241.5 147 76.9
ClCG07G002880 Citrullus lanatus HOM05D008409 ORTHO05D010483 2.1e-61 239.2 150 72.7
PGR142G1945 Punica granatum HOM05D008409 ORTHO05D010483 4.6e-61 238.0 148 73.6
Sed0018099 Sechium edule HOM05D008409 ORTHO05D010483 6.1e-61 237.7 152 70.4
Sabra13G0110600 Salix brachista HOM05D008409 ORTHO05D010483 1.0e-60 236.9 150 73.3
Gohir.A04G103600 Gossypium hirsutum HOM05D008409 ORTHO05D010483 1.8e-60 236.1 151 74.2
Ciclev10017070m.g Citrus clementina HOM05D008409 ORTHO05D010483 3.0e-60 235.3 150 75.3
MELO3C018733.2 Cucumis melo HOM05D008409 ORTHO05D010483 1.1e-59 233.4 150 70.0
Gorai.012G128600 Gossypium raimondii HOM05D008409 ORTHO05D010483 1.5e-59 233.0 151 73.5
Aqoxy1G02429 Aquilegia oxysepala HOM05D008409 ORTHO05D010483 3.3e-59 231.9 148 73.0
CsaV3_7G004460 Cucumis sativus L. HOM05D008409 ORTHO05D010483 3.3e-59 231.9 150 69.3
Gohir.D04G143000 Gossypium hirsutum HOM05D008409 ORTHO05D010483 6.3e-58 227.6 151 72.2
COL.COLO4_30195 Corchorus olitorius HOM05D008409 ORTHO05D010483 2.6e-56 222.2 137 77.4
TWI36G0630 Tripterygium wilfordii HOM05D008409 ORTHO05D010483 1.7e-55 219.5 150 67.3
MD09G1247200 Malus domestica HOM05D008409 ORTHO05D010483 2.2e-55 219.2 149 71.8
Peaxi162Scf00059g01918 Petunia axillaris HOM05D008409 ORTHO05D010483 5.0e-55 218.0 147 68.7
PSO675G8696 Papaver somniferum HOM05D008409 ORTHO05D010483 1.4e-54 216.5 147 69.4
CAN.G578.4 Capsicum annuum HOM05D008409 ORTHO05D010483 6.1e-53 211.1 144 68.8
CSS0031688 Camellia sinensis var. sinensis HOM05D008409 ORTHO05D010483 7.9e-53 210.7 142 75.4
MBI06_g04179_MAGBIO Magnolia biondii HOM05D008409 ORTHO05D010483 1.8e-52 209.5 148 70.3
Os08g0374000 Oryza sativa ssp. japonica HOM05D008409 ORTHO05D010483 5.1e-52 208.0 148 63.5
PSO541G0816 Papaver somniferum HOM05D008409 ORTHO05D010483 8.8e-52 207.2 147 66.7
Solyc10g008330.4 Solanum lycopersicum HOM05D008409 ORTHO05D010483 1.1e-51 206.8 148 66.9
PGSC0003DMG400013143 Solanum tuberosum HOM05D008409 ORTHO05D010483 3.3e-51 205.3 148 66.2
ATR0737G133 Amborella trichopoda HOM05D008409 ORTHO05D010483 9.7e-51 203.8 147 64.6
Sopen10g004190 Solanum pennellii HOM05D008409 ORTHO05D010483 3.1e-49 198.7 148 64.9
Nitab4.5_0009473g0020 Nicotiana tabacum HOM05D008409 ORTHO05D010483 3.2e-46 188.7 148 64.9
vmacro12306 Vaccinium macrocarpon HOM05D008409 ORTHO05D010483 3.0e-44 182.2 117 74.4
SEGI_00232 Sequoiadendron giganteum HOM05D008409 ORTHO05D010483 3.5e-40 168.7 151 53.6
Dinv23634 Davidia involucrata HOM05D008409 ORTHO05D010483 2.5e-38 162.5 101 75.2
QL08p038938 Quercus lobata HOM05D008409 ORTHO05D010483 7.7e-32 141.0 94 70.2
Zm00001eb080380 Zea mays HOM05D000197 ORTHO05D000114 6.1e-13 78.2 138 33.3
SMO332G0032 Selaginella moellendorffii HOM05D008409 ORTHO05D000186 2.3e-12 76.3 137 30.7
MBI15_g00934_MAGBIO Magnolia biondii HOM05D000197 ORTHO05D000114 3.0e-12 75.9 134 35.8
SGA_v2.0_scaffold8G04238 Striga asiatica HOM05D000197 ORTHO05D000114 5.2e-12 75.1 144 33.3
SMO141G0292 Selaginella moellendorffii HOM05D000322 ORTHO05D010483 6.8e-12 74.7 144 30.6
Sc04g0008950 Simmondsia chinensis HOM05D000197 ORTHO05D000114 1.5e-11 73.6 142 34.5
Hma1.2p1_1017F.1_g248290 Hydrangea macrophylla HOM05D000197 ORTHO05D000114 1.3e-10 70.5 144 31.9
Nn4g22865 Nelumbo nucifera HOM05D000197 ORTHO05D000114 4.9e-10 68.6 141 31.2
AagrBONN_evm.TU.Sc2ySwM_228.4478 Anthoceros agrestis HOM05D008409 ORTHO05D010483 8.3e-10 67.8 145 30.3
BcaB03g14124 Brassica carinata HOM05D000197 ORTHO05D000114 1.4e-09 67.0 144 33.3
A07p13670 Brassica napus HOM05D000197 ORTHO05D000114 1.4e-09 67.0 144 33.3
C07p20100 Brassica napus HOM05D000197 ORTHO05D000114 1.4e-09 67.0 144 33.3
BolC7t42531H Brassica oleracea HOM05D000197 ORTHO05D000114 1.4e-09 67.0 144 33.3
BraA07t29119Z Brassica rapa HOM05D000197 ORTHO05D000114 1.4e-09 67.0 144 33.3
HPP92_015289 Vanilla planifolia HOM05D000197 ORTHO05D000114 1.4e-09 67.0 144 29.9
Thhalv10008991m.g Eutrema salsugineum HOM05D000197 ORTHO05D000114 2.4e-09 66.2 144 32.6
BcaC06g35074 Brassica carinata HOM05D000197 ORTHO05D000114 3.2e-09 65.9 144 32.6
HPP92_010019 Vanilla planifolia HOM05D000197 ORTHO05D000114 3.2e-09 65.9 144 29.2
AL1G37780 Arabidopsis lyrata HOM05D000197 ORTHO05D000114 7.0e-09 64.7 144 31.2
Carub.0001s2344 Capsella rubella HOM05D000197 ORTHO05D000114 7.0e-09 64.7 144 31.9
AT1G24020 Arabidopsis thaliana HOM05D000197 ORTHO05D000114 9.2e-09 64.3 144 31.2
Ca_04619_v3 Cicer arietinum L. HOM05D000197 ORTHO05D000114 1.2e-08 63.9 128 32.8
HanXRQChr11g0351041 Helianthus annuus HOM05D000197 ORTHO05D000114 1.2e-08 63.9 146 29.5
Pp3c13_23010 Physcomitrium patens HOM05D012277 ORTHO05D010483 1.2e-08 63.9 140 30.0
Pp3c13_23030 Physcomitrium patens HOM05D012277 ORTHO05D010483 1.2e-08 63.9 140 30.0
Aqoxy3G00935 Aquilegia oxysepala HOM05D000197 ORTHO05D000114 2.7e-08 62.8 148 28.4
Glyma.01G034000 Glycine max HOM05D000197 ORTHO05D000114 2.7e-08 62.8 135 33.3
Pp3c1_10460 Physcomitrium patens HOM05D012277 ORTHO05D010483 2.7e-08 62.8 146 30.1
Pp3c7_19830 Physcomitrium patens HOM05D012277 ORTHO05D010483 3.5e-08 62.4 140 27.9
Pp3c7_19850 Physcomitrium patens HOM05D012277 ORTHO05D010483 3.5e-08 62.4 140 27.9
Glyma.02G032300 Glycine max HOM05D000197 ORTHO05D000114 4.6e-08 62.0 135 32.6
Pp3c8_12660 Physcomitrium patens HOM05D008409 ORTHO05D010483 4.6e-08 62.0 124 26.6
CARHR024320 Cardamine hirsuta HOM05D000197 ORTHO05D000114 1.7e-07 60.1 144 29.2
PSO478G3712 Papaver somniferum HOM05D000197 ORTHO05D000114 3.0e-07 59.3 148 31.1
SMO347G0071 Selaginella moellendorffii HOM05D008409 ORTHO05D010483 6.6e-07 58.2 121 27.3
Eucgr.F03349 Eucalyptus grandis HOM05D001593 ORTHO05D010032 8.6e-07 57.8 148 25.0
Prupe.4G188300 Prunus persica HOM05D001593 ORTHO05D010032 8.6e-07 57.8 148 24.3
SMO337G0049 Selaginella moellendorffii HOM05D000322 ORTHO05D000186 8.6e-07 57.8 129 27.1
Mapoly0063s0024 Marchantia polymorpha HOM05D008409 ORTHO05D010032 1.5e-06 57.0 93 37.6
COL.COLO4_08129 Corchorus olitorius HOM05D001593 ORTHO05D002007 1.9e-06 56.6 122 30.3
HanXRQChr05g0156501 Helianthus annuus HOM05D001593 ORTHO05D010032 1.9e-06 56.6 149 24.2
RcHm_v2.0_Chr4g0392581 Rosa chinensis HOM05D000197 ORTHO05D000114 3.3e-06 55.8 142 26.1
SMO141G0029 Selaginella moellendorffii HOM05D000322 ORTHO05D000186 3.3e-06 55.8 142 26.1
Potri.011G127800 Populus trichocarpa HOM05D001593 ORTHO05D010032 4.3e-06 55.5 150 24.0
ECA246G2813 Erigeron canadensis HOM05D001593 ORTHO05D010032 5.6e-06 55.1 151 28.5


User provided reference genes

Program Settings