Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01020532001 Vitis vinifera HOM05D004790 ORTHO05D005678 1.1e-206 723.0 350 100.0
Dinv23649 Davidia involucrata HOM05D004790 ORTHO05D005678 2.1e-125 453.0 536 49.1
Manes.13G147300 Manihot esculenta HOM05D004790 ORTHO05D005678 4.0e-124 448.7 514 50.4
Gohir.A04G104200 Gossypium hirsutum HOM05D004790 ORTHO05D005678 6.8e-124 448.0 508 50.2
Gohir.D04G143900 Gossypium hirsutum HOM05D004790 ORTHO05D005678 7.5e-123 444.5 508 50.2
Gorai.012G129400 Gossypium raimondii HOM05D004790 ORTHO05D005678 7.5e-123 444.5 508 50.2
Thecc.02G178300 Theobroma cacao HOM05D004790 ORTHO05D005678 4.9e-122 441.8 508 50.4
Duzib248G1314 Durio zibethinus HOM05D004790 ORTHO05D005678 1.9e-121 439.9 509 49.7
CSS0024255 Camellia sinensis var. sinensis HOM05D004790 ORTHO05D005678 3.2e-121 439.1 546 46.9
CSS0033247 Camellia sinensis var. sinensis HOM05D004790 ORTHO05D005678 3.2e-121 439.1 546 46.9
COL.COLO4_30176 Corchorus olitorius HOM05D004790 ORTHO05D005678 3.2e-121 439.1 504 49.8
Atru.chr6.3004 Acer truncatum HOM05D004790 ORTHO05D005678 1.0e-119 434.1 522 48.9
MD09G1249000 Malus domestica HOM05D004790 ORTHO05D005678 1.1e-118 430.6 517 47.8
MD17G1241500 Malus domestica HOM05D004790 ORTHO05D005678 1.9e-118 429.9 514 47.7
RcHm_v2.0_Chr2g0126141 Rosa chinensis HOM05D004790 ORTHO05D005678 7.3e-118 427.9 536 46.8
Cfa014604 Carpinus fangiana HOM05D004790 ORTHO05D005678 9.5e-118 427.6 520 47.7
CiPaw.03G175600 Carya illinoinensis HOM05D004790 ORTHO05D005678 1.2e-117 427.2 522 46.6
Ciclev10014904m.g Citrus clementina HOM05D004790 ORTHO05D005678 2.8e-117 426.0 523 47.8
FvH4_6g26160 Fragaria vesca HOM05D004790 ORTHO05D005678 2.8e-117 426.0 528 46.2
Potri.013G133200 Populus trichocarpa HOM05D004790 ORTHO05D005678 5.2e-116 421.8 514 46.7
Sabra13G0113200 Salix brachista HOM05D004790 ORTHO05D005678 6.8e-116 421.4 514 46.7
TAR627G0452 Trochodendron aralioides HOM05D004790 ORTHO05D005678 8.9e-116 421.0 529 46.5
FAN02G0059 Fragaria x ananassa HOM05D004790 ORTHO05D005678 5.8e-115 418.3 528 45.8
Prupe.3G136400 Prunus persica HOM05D004790 ORTHO05D005678 5.8e-115 418.3 538 45.9
Manes.12G090600 Manihot esculenta HOM05D004790 ORTHO05D005678 6.4e-114 414.8 512 47.1
Actinidia09859 Actinidia chinensis HOM05D004790 ORTHO05D005678 3.2e-113 412.5 551 45.6
QL08p038483 Quercus lobata HOM05D004790 ORTHO05D005678 4.1e-113 412.1 523 46.1
Haze_13149 Corylus avellana HOM05D004790 ORTHO05D005678 4.6e-112 408.7 509 46.4
vmacro12295 Vaccinium macrocarpon HOM05D004790 ORTHO05D005678 1.0e-111 407.5 552 44.6
TWI36G0090 Tripterygium wilfordii HOM05D004790 ORTHO05D005678 5.0e-111 405.2 533 45.0
ClCG02G017590 Citrullus lanatus HOM05D004790 ORTHO05D005678 1.4e-108 397.1 525 45.1
CsaV3_6G012960 Cucumis sativus L. HOM05D004790 ORTHO05D005678 8.9e-108 394.4 523 44.6
Actinidia11039 Actinidia chinensis HOM05D004790 ORTHO05D005678 1.5e-107 393.7 530 44.5
Eucgr.A01811 Eucalyptus grandis HOM05D004790 ORTHO05D005678 2.6e-107 392.9 523 43.6
Nn1g04055 Nelumbo nucifera HOM05D004790 ORTHO05D005678 5.8e-107 391.7 541 44.7
Cc05_g07060 Coffea canephora HOM05D004790 ORTHO05D005678 7.5e-107 391.3 518 44.8
CANSAT11G0193 Cannabis sativa HOM05D004790 ORTHO05D005678 1.3e-106 390.6 537 43.2
MELO3C013614.2 Cucumis melo HOM05D004790 ORTHO05D005678 1.3e-106 390.6 523 43.8
Hma1.2p1_0213F.1_g090370 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 2.9e-106 389.4 553 44.1
Sabra19G0112400 Salix brachista HOM05D004790 ORTHO05D005678 6.4e-106 388.3 514 44.0
Lj1A724T21 Lonicera japonica HOM05D004790 ORTHO05D005678 3.2e-105 386.0 505 45.3
Gohir.D13G066200 Gossypium hirsutum HOM05D004790 ORTHO05D005678 4.1e-105 385.6 491 46.6
Sabra19G0111100 Salix brachista HOM05D004790 ORTHO05D005678 7.1e-105 384.8 515 43.5
Oeu045846.1 Olea europaea HOM05D004790 ORTHO05D005678 2.1e-104 383.3 525 43.8
Hund01104 Selenicereus undatus HOM05D004790 ORTHO05D005678 4.6e-104 382.1 543 43.8
Cpa.g.sc34.151 Carica papaya HOM05D004790 ORTHO05D005678 1.3e-103 380.6 496 44.6
AUR62037353 Chenopodium quinoa HOM05D004790 ORTHO05D005678 2.3e-103 379.8 535 41.9
Glyma.12G203700 Glycine max HOM05D004790 ORTHO05D005678 4.3e-102 375.6 500 44.4
Ah.01g015210 Amaranthus hybridus HOM05D004790 ORTHO05D005678 5.6e-102 375.2 536 42.5
PGR042G3525 Punica granatum HOM05D004790 ORTHO05D005678 7.3e-102 374.8 510 43.5
Sed0002654 Sechium edule HOM05D004790 ORTHO05D005678 2.1e-101 373.2 534 41.9
Oeu029923.1 Olea europaea HOM05D004790 ORTHO05D005678 4.7e-101 372.1 518 42.7
EL10Ac9g20754 Beta vulgaris HOM05D004790 ORTHO05D005678 6.2e-101 371.7 538 41.3
Gorai.013G075500 Gossypium raimondii HOM05D004790 ORTHO05D005678 8.1e-101 371.3 500 44.8
Phvul.005G104500 Phaseolus vulgaris HOM05D004790 ORTHO05D005678 4.0e-100 369.0 500 43.6
Glyma.13G298000 Glycine max HOM05D004790 ORTHO05D005678 8.9e-100 367.9 499 43.7
DCAR_013003 Daucus carota HOM05D004790 ORTHO05D005678 2.6e-99 366.3 524 43.3
VMungo1080G1693 Vigna mungo HOM05D004790 ORTHO05D005678 2.6e-99 366.3 500 44.0
Peaxi162Scf00206g00710 Petunia axillaris HOM05D004790 ORTHO05D005678 2.1e-96 356.7 508 40.9
MSTRG.12822 Avicennia marina HOM05D004790 ORTHO05D005678 1.3e-95 354.0 522 41.4
Sc12g0003010 Simmondsia chinensis HOM05D004790 ORTHO05D005678 3.0e-95 352.8 538 38.8
Nitab4.5_0007168g0010 Nicotiana tabacum HOM05D004790 ORTHO05D005678 3.9e-95 352.4 514 41.2
Nitab4.5_0000585g0100 Nicotiana tabacum HOM05D004790 ORTHO05D005678 4.3e-94 349.0 516 41.1
Rhsim06G0143900 Rhododendron simsii HOM05D004790 ORTHO05D005678 9.6e-94 347.8 551 41.0
Migut.H01089 Erythranthe guttata HOM05D004790 ORTHO05D005678 2.1e-93 346.7 525 42.1
CAN.G1655.2 Capsicum annuum HOM05D004790 ORTHO05D005678 2.8e-93 346.3 513 41.9
FAN05G3153 Fragaria x ananassa HOM05D004790 ORTHO05D005678 3.6e-93 345.9 472 43.4
Lsat_1_v5_gn_8_133340 Lactuca sativa HOM05D004790 ORTHO05D005678 4.7e-93 345.5 516 41.3
SGA_v2.0_scaffold109G31134 Striga asiatica HOM05D004790 ORTHO05D005678 5.3e-92 342.0 530 40.9
PGSC0003DMG400021668 Solanum tuberosum HOM05D004790 ORTHO05D005678 3.4e-91 339.3 518 40.3
HanXRQChr17g0553511 Helianthus annuus HOM05D004790 ORTHO05D005678 9.9e-91 337.8 500 41.4
Gohir.A13G055800 Gossypium hirsutum HOM05D004790 ORTHO05D005678 2.9e-90 336.3 460 45.2
Lalb_Chr14g0366851 Lupinus albus HOM05D004790 ORTHO05D005678 2.9e-90 336.3 490 40.2
Lsat_1_v5_gn_4_65660 Lactuca sativa HOM05D004790 ORTHO05D005678 8.4e-90 334.7 496 41.1
C08p10710 Brassica napus HOM05D004790 ORTHO05D005678 2.4e-89 333.2 504 38.1
BolC8t48743H Brassica oleracea HOM05D004790 ORTHO05D005678 3.2e-89 332.8 501 38.1
A08p20170 Brassica napus HOM05D004790 ORTHO05D005678 5.4e-89 332.0 506 37.7
THA.LOC104804061 Tarenaya hassleriana HOM05D004790 ORTHO05D005678 2.1e-88 330.1 518 39.6
BraA08t33977Z Brassica rapa HOM05D004790 ORTHO05D005678 3.5e-88 329.3 506 37.5
MBI19_g19847_MAGBIO Magnolia biondii HOM05D004790 ORTHO05D005678 3.5e-88 329.3 555 37.8
BcaB03g12561 Brassica carinata HOM05D004790 ORTHO05D005678 1.9e-86 323.6 505 37.8
A03p57970 Brassica napus HOM05D004790 ORTHO05D005678 7.3e-86 321.6 507 37.1
BolC7t46084H Brassica oleracea HOM05D004790 ORTHO05D005678 9.6e-86 321.2 509 37.7
BraA03t14860Z Brassica rapa HOM05D004790 ORTHO05D005678 9.6e-86 321.2 507 37.1
Solyc10g008420.3 Solanum lycopersicum HOM05D004790 ORTHO05D005678 2.1e-85 320.1 520 38.7
Lj3g0014290 Lotus japonicus HOM05D004790 ORTHO05D005678 2.8e-85 319.7 514 37.4
C07p56090 Brassica napus HOM05D004790 ORTHO05D005678 4.8e-85 318.9 508 37.4
Aa31LG11G10330 Aethionema arabicum HOM05D004790 ORTHO05D005678 1.8e-84 317.0 517 36.9
Sp7g26220 Schrenkiella parvula HOM05D004790 ORTHO05D005678 2.4e-84 316.6 516 36.6
Sopen10g004250 Solanum pennellii HOM05D004790 ORTHO05D005678 2.4e-84 316.6 520 38.5
Ca_01506_v3 Cicer arietinum L. HOM05D004790 ORTHO05D005678 4.0e-84 315.8 513 36.6
Lalb_Chr22g0356521 Lupinus albus HOM05D004790 ORTHO05D005678 6.9e-84 315.1 489 38.2
Thhalv10024944m.g Eutrema salsugineum HOM05D004790 ORTHO05D005678 1.2e-83 314.3 519 35.8
BcaC06g32632 Brassica carinata HOM05D004790 ORTHO05D005678 2.0e-83 313.5 494 37.0
SHI10412 Sapria himalayana HOM05D004790 ORTHO05D005678 2.6e-83 313.2 514 37.9
AL7G24340 Arabidopsis lyrata HOM05D004790 ORTHO05D005678 3.4e-83 312.8 518 35.9
AT4G28260 Arabidopsis thaliana HOM05D004790 ORTHO05D005678 4.5e-83 312.4 518 36.3
CARHR235970 Cardamine hirsuta HOM05D004790 ORTHO05D005678 1.7e-82 310.5 521 35.9
unitig_26.g9948 Utricularia gibba HOM05D004790 ORTHO05D005678 3.8e-82 309.3 521 37.0
Hma1.2p1_3039F.1_g331970 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 6.4e-82 308.5 437 42.1
Aqoxy1G02499 Aquilegia oxysepala HOM05D004790 ORTHO05D005678 2.1e-80 303.5 472 38.3
Medtr2g090285 Medicago truncatula HOM05D004790 ORTHO05D005678 1.8e-79 300.4 513 35.1
PSO675G6339 Papaver somniferum HOM05D004790 ORTHO05D005678 1.8e-79 300.4 496 38.3
PSO541G2110 Papaver somniferum HOM05D004790 ORTHO05D005678 3.9e-79 299.3 500 38.4
Carub.0007s1250 Capsella rubella HOM05D004790 ORTHO05D005678 5.1e-79 298.9 524 34.7
Duzib052G0346 Durio zibethinus HOM05D004790 ORTHO05D005678 1.4e-76 290.8 507 38.5
SalBow7G3762 Salvia bowleyana HOM05D004790 ORTHO05D005678 1.8e-76 290.4 553 35.8
Zm00001eb044390 Zea mays HOM05D004790 ORTHO05D005678 2.5e-73 280.0 524 35.5
TPR.G6443 Trifolium pratense HOM05D004790 ORTHO05D005678 1.5e-70 270.8 523 32.3
Psat5g271320 Pisum sativum HOM05D004790 ORTHO05D005678 1.9e-70 270.4 366 43.2
ATR0680G165 Amborella trichopoda HOM05D004790 ORTHO05D005678 1.4e-68 264.2 490 35.9
Zm00001eb044450 Zea mays HOM05D004790 ORTHO05D005678 1.4e-68 264.2 506 34.4
arahy.Tifrunner.gnm1.ann1.DEE7JK Arachis hypogaea HOM05D004790 ORTHO05D005678 9.0e-68 261.5 517 34.0
Hma1.2p1_1201F.1_g266610 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 1.2e-67 261.2 437 38.4
CDE02G0639 Ceratophyllum demersum HOM05D004790 ORTHO05D005678 4.5e-67 259.2 552 32.8
ECA234G1653 Erigeron canadensis HOM05D004790 ORTHO05D005678 4.5e-67 259.2 210 59.5
arahy.Tifrunner.gnm1.ann1.1EW4X0 Arachis hypogaea HOM05D004790 ORTHO05D005678 1.3e-66 257.7 514 33.5
SalBow7G1856 Salvia bowleyana HOM05D004790 ORTHO05D005678 5.7e-62 242.3 473 35.7
Hma1.2p1_3039F.1_g331980 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 6.9e-60 235.3 431 38.7
Hma1.2p1_3039F.1_g331990 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 2.2e-58 230.3 455 36.0
Hma1.2p1_1201F.1_g266630 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 1.9e-57 227.3 455 35.8
BcaC06g32633 Brassica carinata HOM05D004790 ORTHO05D005678 1.8e-55 220.7 399 34.3
Hma1.2p1_1201F.1_g266650 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 1.3e-53 214.5 411 34.3
Aa31LG11G14100 Aethionema arabicum HOM05D004790 ORTHO05D005678 2.2e-53 213.8 445 31.5
Hma1.2p1_3039F.1_g332010 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 2.8e-53 213.4 411 34.1
Os10g0500600 Oryza sativa ssp. japonica HOM05D004790 ORTHO05D005678 3.7e-53 213.0 467 33.6
AUR62042487 Chenopodium quinoa HOM05D004790 ORTHO05D005678 2.9e-50 203.4 394 35.5
FAN05G5699 Fragaria x ananassa HOM05D004790 ORTHO05D005678 8.5e-50 201.8 148 65.5
HPP92_027303 Vanilla planifolia HOM05D004790 ORTHO05D005678 4.2e-49 199.5 193 53.9
Prupe.3G136600 Prunus persica HOM05D004790 ORTHO05D005678 6.7e-47 192.2 145 68.3
Hma1.2p1_1201F.1_g266660 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 1.9e-41 174.1 233 41.6
Hma1.2p1_1201F.1_g266640 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 8.0e-40 168.7 374 33.4
Hma1.2p1_3039F.1_g332000 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 8.0e-40 168.7 374 33.4
Dinv26430 Davidia involucrata HOM05D004790 ORTHO05D005678 8.2e-37 158.7 213 45.5
SEGI_40185 Sequoiadendron giganteum HOM05D004790 ORTHO05D005678 1.4e-36 157.9 415 30.4
SEGI_15900 Sequoiadendron giganteum HOM05D004790 ORTHO05D005678 4.0e-31 139.8 348 30.2
GSVIVG01029526001 Vitis vinifera HOM05D004790 ORTHO05D005678 8.8e-31 138.7 68 97.1
Mapoly0001s0243 Marchantia polymorpha HOM05D004790 ORTHO05D005678 3.7e-29 133.3 485 26.2
Sabra13G0109400 Salix brachista HOM05D004790 ORTHO05D005678 2.5e-25 120.6 98 62.2
SMO111G0050 Selaginella moellendorffii HOM05D004790 ORTHO05D005678 5.5e-25 119.4 366 25.7
TPR.G11082 Trifolium pratense HOM05D004790 ORTHO05D005678 9.4e-25 118.6 374 28.9
Dinv07566 Davidia involucrata HOM05D004790 ORTHO05D005678 1.0e-23 115.2 356 26.1
Pp3c8_24840 Physcomitrium patens HOM05D004790 ORTHO05D005678 1.0e-23 115.2 199 33.2
Pp3c23_21860 Physcomitrium patens HOM05D004790 ORTHO05D005678 5.7e-22 109.4 201 32.8
Dinv17315 Davidia involucrata HOM05D004790 ORTHO05D005678 2.4e-20 104.0 219 31.1
Peaxi162Scf00132g00037 Petunia axillaris HOM05D004790 ORTHO05D005678 7.7e-19 99.0 311 25.4
Sabra13G0113000 Salix brachista HOM05D004790 ORTHO05D005678 1.7e-18 97.8 70 62.9
Sabra13G0109000 Salix brachista HOM05D000001 ORTHO05D000424 2.8e-16 90.5 57 68.4
FAN05G5117 Fragaria x ananassa HOM05D000001 ORTHO05D000424 6.8e-15 85.9 58 69.0
Hma1.2p1_0002F.1_g002220 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 1.4e-12 78.2 82 50.0
Pp3c20_1230 Physcomitrium patens HOM05D004790 ORTHO05D005678 3.5e-11 73.6 97 36.1
AagrBONN_evm.TU.Sc2ySwM_228.2505 Anthoceros agrestis HOM05D004790 ORTHO05D005678 2.3e-10 70.9 128 33.6
AagrBONN_evm.TU.Sc2ySwM_228.2348 Anthoceros agrestis HOM05D004790 ORTHO05D007542 7.3e-09 65.9 61 42.6
Dinv07568 Davidia involucrata HOM05D032653 ORTHO05D182718 2.3e-07 60.8 226 26.1


User provided reference genes

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