Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01020430001 Vitis vinifera HOM05D005971 ORTHO05D007459 0.0e+00 1771.9 872 100.0
GSVIVG01020427001 Vitis vinifera HOM05D005971 ORTHO05D007459 0.0e+00 1479.5 889 84.8
Dinv19623 Davidia involucrata HOM05D005971 ORTHO05D007459 3.1e-303 1045.0 936 56.5
CSS0033662 Camellia sinensis var. sinensis HOM05D005971 ORTHO05D007459 1.1e-276 956.8 930 52.8
Actinidia35435 Actinidia chinensis HOM05D005971 ORTHO05D007459 2.5e-276 955.7 931 52.7
Potri.001G457550 Populus trichocarpa HOM05D005971 ORTHO05D007459 9.8e-273 943.7 926 52.7
Cfa019419 Carpinus fangiana HOM05D005971 ORTHO05D007459 1.7e-272 943.0 933 52.2
QL04p073974 Quercus lobata HOM05D005971 ORTHO05D007459 4.1e-271 938.3 932 52.0
CSS0049989 Camellia sinensis var. sinensis HOM05D005971 ORTHO05D007459 2.5e-268 929.1 930 51.9
Sabra16G0310100 Salix brachista HOM05D005971 ORTHO05D007459 4.4e-265 918.3 940 51.0
Lj1C905G3 Lonicera japonica HOM05D005971 ORTHO05D007459 1.9e-263 912.9 917 51.6
TAR626G0017 Trochodendron aralioides HOM05D005971 ORTHO05D007459 5.1e-261 904.8 943 50.9
Atru.chr12.2184 Acer truncatum HOM05D005971 ORTHO05D007459 1.8e-258 896.3 931 50.3
RcHm_v2.0_Chr5g0026671 Rosa chinensis HOM05D005971 ORTHO05D007459 6.4e-256 887.9 932 49.5
FAN11G3334 Fragaria x ananassa HOM05D005971 ORTHO05D007459 1.9e-255 886.3 932 49.4
FvH4_3g15860 Fragaria vesca HOM05D005971 ORTHO05D007459 1.2e-254 883.6 932 49.2
CANSAT80G2256 Cannabis sativa HOM05D005971 ORTHO05D007459 4.6e-254 881.7 926 49.4
FAN16G0465 Fragaria x ananassa HOM05D005971 ORTHO05D007459 7.8e-254 880.9 932 49.4
Ciclev10018677m.g Citrus clementina HOM05D005971 ORTHO05D007459 1.9e-252 876.3 928 49.5
MD05G1219300 Malus domestica HOM05D005971 ORTHO05D007459 1.1e-244 850.5 932 49.4
TWI39G0032 Tripterygium wilfordii HOM05D005971 ORTHO05D007459 7.6e-241 837.8 940 48.9
Migut.M01561 Erythranthe guttata HOM05D005971 ORTHO05D007459 1.9e-239 833.2 935 46.4
Manes.14G015836 Manihot esculenta HOM05D005971 ORTHO05D007459 1.9e-239 833.2 841 50.8
Oeu052011.1 Olea europaea HOM05D005971 ORTHO05D007459 2.6e-233 812.8 887 47.7
Cc05_g16010 Coffea canephora HOM05D005971 ORTHO05D007459 3.4e-233 812.4 932 45.3
Sopen10g001570 Solanum pennellii HOM05D005971 ORTHO05D007459 5.8e-233 811.6 929 45.9
Glyma.15G255000 Glycine max HOM05D005971 ORTHO05D007459 6.4e-232 808.1 932 44.5
TPR.G9756 Trifolium pratense HOM05D005971 ORTHO05D007459 3.5e-230 802.4 934 45.4
Lalb_Chr25g0285011 Lupinus albus HOM05D005971 ORTHO05D007459 1.3e-229 800.4 925 45.0
Nitab4.5_0000611g0060 Nicotiana tabacum HOM05D005971 ORTHO05D007459 1.1e-228 797.3 941 45.6
Phvul.005G056400 Phaseolus vulgaris HOM05D005971 ORTHO05D007459 2.1e-227 793.1 924 44.7
CAN.G492.69 Capsicum annuum HOM05D005971 ORTHO05D007459 2.0e-225 786.6 928 44.9
arahy.Tifrunner.gnm1.ann1.MUD8D6 Arachis hypogaea HOM05D005971 ORTHO05D007459 3.4e-225 785.8 931 44.0
Ca_03684_v3 Cicer arietinum L. HOM05D005971 ORTHO05D007459 3.4e-225 785.8 925 44.6
Duzib268G0338 Durio zibethinus HOM05D005971 ORTHO05D007459 3.8e-224 782.3 929 45.3
Aqoxy2G04113 Aquilegia oxysepala HOM05D005971 ORTHO05D007459 6.5e-224 781.6 939 45.6
PSO675G3107 Papaver somniferum HOM05D005971 ORTHO05D007459 1.1e-223 780.8 926 46.0
Medtr2g069560 Medicago truncatula HOM05D005971 ORTHO05D007459 3.2e-223 779.2 934 44.0
Peaxi162Scf00267g01016 Petunia axillaris HOM05D005971 ORTHO05D007459 3.5e-222 775.8 929 44.3
PSO017G5934 Papaver somniferum HOM05D005971 ORTHO05D007459 4.6e-222 775.4 926 45.8
Lj3g0007743 Lotus japonicus HOM05D005971 ORTHO05D007459 3.0e-221 772.7 932 44.3
DCAR_009638 Daucus carota HOM05D005971 ORTHO05D007459 1.5e-220 770.4 935 43.1
vmacro09786 Vaccinium macrocarpon HOM05D005971 ORTHO05D007459 1.5e-220 770.4 923 45.3
SGA_v2.0_scaffold7G03577 Striga asiatica HOM05D005971 ORTHO05D007459 7.4e-220 768.1 922 44.7
THA.LOC104822751 Tarenaya hassleriana HOM05D005971 ORTHO05D007459 2.8e-219 766.1 922 43.6
Gorai.013G178300 Gossypium raimondii HOM05D005971 ORTHO05D007459 8.2e-219 764.6 934 44.5
Prupe.4G140600 Prunus persica HOM05D005971 ORTHO05D007459 1.5e-217 760.4 916 45.7
ClCG11G016380 Citrullus lanatus HOM05D005971 ORTHO05D007459 2.0e-217 760.0 930 43.9
PGR031G0315 Punica granatum HOM05D005971 ORTHO05D007459 2.6e-217 759.6 933 44.1
Psat1g011400 Pisum sativum HOM05D005971 ORTHO05D007459 5.9e-217 758.4 934 43.5
CsaV3_4G031820 Cucumis sativus L. HOM05D005971 ORTHO05D007459 1.9e-212 743.4 930 43.4
Ah.06g185720 Amaranthus hybridus HOM05D005971 ORTHO05D007459 2.5e-212 743.0 936 41.8
Nitab4.5_0004488g0030 Nicotiana tabacum HOM05D005971 ORTHO05D007459 2.2e-211 740.0 962 42.6
Rhsim04G0005800 Rhododendron simsii HOM05D005971 ORTHO05D007459 2.4e-210 736.5 1043 40.5
ECA240G1928 Erigeron canadensis HOM05D005971 ORTHO05D007459 4.1e-210 735.7 915 43.8
EL10Ac2g03354 Beta vulgaris HOM05D005971 ORTHO05D007459 5.3e-210 735.3 930 42.4
Sed0013026 Sechium edule HOM05D005971 ORTHO05D007459 3.2e-207 726.1 918 43.2
Atru.chr12.2179 Acer truncatum HOM05D005971 ORTHO05D007459 5.5e-207 725.3 747 50.2
SalBow8G3201 Salvia bowleyana HOM05D005971 ORTHO05D007459 8.2e-203 711.4 950 41.3
Solyc10g005600.4 Solanum lycopersicum HOM05D005971 ORTHO05D007459 8.2e-203 711.4 897 43.6
Lsat_1_v5_gn_7_71401 Lactuca sativa HOM05D005971 ORTHO05D007459 1.8e-202 710.3 926 42.7
Aa31LG1G20480 Aethionema arabicum HOM05D005971 ORTHO05D007459 1.2e-201 707.6 923 40.1
AL1G14000 Arabidopsis lyrata HOM05D005971 ORTHO05D007459 1.5e-201 707.2 921 40.9
Carub.0001s0356 Capsella rubella HOM05D005971 ORTHO05D007459 2.0e-201 706.8 920 41.1
HanXRQChr05g0160991 Helianthus annuus HOM05D005971 ORTHO05D007459 2.2e-200 703.4 912 42.2
BolC5t29039H Brassica oleracea HOM05D005971 ORTHO05D007459 5.0e-200 702.2 912 40.8
C05p02580 Brassica napus HOM05D005971 ORTHO05D007459 1.6e-198 697.2 912 40.8
A10p02830 Brassica napus HOM05D005971 ORTHO05D007459 2.7e-198 696.4 919 40.7
AT1G04390 Arabidopsis thaliana HOM05D005971 ORTHO05D007459 1.0e-197 694.5 921 40.6
FAN21G1476 Fragaria x ananassa HOM05D005971 ORTHO05D007459 3.6e-182 642.9 894 41.2
AUR62038398 Chenopodium quinoa HOM05D005971 ORTHO05D007459 4.8e-179 632.5 924 39.0
MBI02_g40085_MAGBIO Magnolia biondii HOM05D005971 ORTHO05D007459 1.3e-176 624.4 851 41.4
Eucgr.F03182 Eucalyptus grandis HOM05D005971 ORTHO05D007459 7.8e-169 598.6 748 41.3
Sc06g0001560 Simmondsia chinensis HOM05D005971 ORTHO05D007459 7.8e-169 598.6 746 41.7
Hund12466 Selenicereus undatus HOM05D005971 ORTHO05D007459 2.9e-168 596.7 793 40.7
Hma1.2p1_0637F.1_g193590 Hydrangea macrophylla HOM05D005971 ORTHO05D007459 1.4e-165 587.8 1000 37.1
BraA10t42550Z Brassica rapa HOM05D005971 ORTHO05D007459 3.0e-165 586.6 892 36.5
Nn7g37820 Nelumbo nucifera HOM05D005971 ORTHO05D007459 1.1e-157 561.6 750 42.9
Thecc.07G154200 Theobroma cacao HOM05D005971 ORTHO05D007459 8.9e-157 558.5 739 42.5
Thhalv10006788m.g Eutrema salsugineum HOM05D005971 ORTHO05D007459 2.6e-156 557.0 888 35.5
MELO3C010564.2 Cucumis melo HOM05D005971 ORTHO05D007459 4.4e-156 556.2 888 37.3
VMungo1080G0173 Vigna mungo HOM05D005971 ORTHO05D007459 1.7e-155 554.3 736 41.3
CARHR003720 Cardamine hirsuta HOM05D005971 ORTHO05D007459 1.6e-145 521.2 715 39.0
Sp1g03210 Schrenkiella parvula HOM05D005971 ORTHO05D007459 6.6e-144 515.8 707 38.6
PGSC0003DMG402011239 Solanum tuberosum HOM05D005971 ORTHO05D007459 5.4e-130 469.5 571 44.7
Gohir.D13G157500 Gossypium hirsutum HOM05D005971 ORTHO05D007459 5.6e-127 459.5 578 43.3
Cpa.g.sc10.37 Carica papaya HOM05D005971 ORTHO05D007459 8.1e-126 455.7 704 38.6
ATR0165G004 Amborella trichopoda HOM05D005971 ORTHO05D007459 3.4e-124 450.3 950 32.5
CDE12G0091 Ceratophyllum demersum HOM05D005971 ORTHO05D007459 1.8e-109 401.4 751 34.1
Gohir.A13G153066 Gossypium hirsutum HOM05D005971 ORTHO05D007459 1.6e-105 388.3 425 46.1
Zm00001eb273960 Zea mays HOM05D005971 ORTHO05D007459 1.6e-97 361.7 790 31.8
unitig_26.g10082 Utricularia gibba HOM05D005971 ORTHO05D007459 2.4e-93 347.8 868 29.4
PGSC0003DMG401011239 Solanum tuberosum HOM05D005971 ORTHO05D007459 4.5e-92 343.6 357 48.2
Mapoly0060s0028 Marchantia polymorpha HOM05D005971 ORTHO05D007459 3.9e-80 303.9 985 26.0
FAN25G3291 Fragaria x ananassa HOM05D005971 ORTHO05D007459 8.8e-72 276.2 311 49.8
Gohir.A13G153099 Gossypium hirsutum HOM05D005971 ORTHO05D007459 8.8e-72 276.2 403 42.9
GSVIVG01020426001 Vitis vinifera HOM05D005971 ORTHO05D007459 2.6e-71 274.6 177 79.1
Pp3c6_21780 Physcomitrium patens HOM05D005971 ORTHO05D007459 4.4e-71 273.9 974 26.1
Cpa.g.sc10.38 Carica papaya HOM05D005971 ORTHO05D007459 3.5e-68 264.2 193 58.5
HPP92_026348 Vanilla planifolia HOM05D005971 ORTHO05D007459 1.2e-60 239.2 299 39.8
Nn7g37821 Nelumbo nucifera HOM05D005971 ORTHO05D007459 1.6e-60 238.8 199 55.8
GSVIVG01020425001 Vitis vinifera HOM05D005971 ORTHO05D007459 3.0e-56 224.6 124 84.7
Peaxi162Scf00095g00013 Petunia axillaris HOM05D005971 ORTHO05D007459 1.3e-51 209.1 208 50.0
Os06g0674800 Oryza sativa ssp. japonica HOM05D005971 ORTHO05D007459 1.3e-46 192.6 352 36.4
Haze_08564 Corylus avellana HOM05D005971 ORTHO05D000006 2.9e-46 191.4 140 64.3
HPP92_026349 Vanilla planifolia HOM05D005971 ORTHO05D007459 4.1e-45 187.6 421 32.1
Gohir.D13G157600 Gossypium hirsutum HOM05D005971 ORTHO05D007459 7.8e-44 183.3 193 50.3
Peaxi162Scf01123g00003 Petunia axillaris HOM05D005971 ORTHO05D007459 1.4e-40 172.6 441 30.2
Peaxi162Scf01123g00008 Petunia axillaris HOM05D005971 ORTHO05D007459 5.2e-40 170.6 235 41.7
VMungo1080G1570 Vigna mungo HOM05D005971 ORTHO05D007459 9.8e-39 166.4 138 53.6
arahy.Tifrunner.gnm1.ann1.Q40ZT9 Arachis hypogaea HOM05D005971 ORTHO05D007459 2.9e-38 164.9 160 48.8
CARHR003730 Cardamine hirsuta HOM05D005971 ORTHO05D007459 3.5e-28 131.3 161 42.9
Glyma.13G098800 Glycine max HOM05D005971 ORTHO05D007459 3.5e-28 131.3 148 43.9
Atru.chr12.2180 Acer truncatum HOM05D005971 ORTHO05D007459 1.0e-27 129.8 155 46.5
Glyma.13G358366 Glycine max HOM05D005971 ORTHO05D007459 1.3e-27 129.4 148 43.2
COL.COLO4_20820 Corchorus olitorius HOM05D005971 ORTHO05D007459 1.5e-23 115.9 112 50.9
Glyma.08G171633 Glycine max HOM05D005971 ORTHO05D007459 3.8e-22 111.3 77 62.3
C03p00610 Brassica napus HOM05D005971 ORTHO05D040551 7.1e-21 107.1 154 37.0
Zm00001eb395680 Zea mays HOM05D005971 ORTHO05D007459 1.1e-18 99.8 238 29.0
CDE12G0613 Ceratophyllum demersum HOM05D005971 ORTHO05D007459 1.9e-13 82.4 95 37.9
Glyma.13G358300 Glycine max HOM05D005971 ORTHO05D007459 7.1e-13 80.5 159 30.2
BolC3t12626H Brassica oleracea HOM05D005971 ORTHO05D040551 7.8e-12 77.0 154 30.5
Glyma.13G052600 Glycine max HOM05D005971 ORTHO05D007459 3.3e-10 71.6 126 33.3
CAN.G1199.4 Capsicum annuum HOM05D002053 ORTHO05D007459 1.3e-06 59.7 47 53.2


User provided reference genes

Program Settings