Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01020254001 Vitis vinifera HOM05D005230 ORTHO05D006506 1.1e-238 829.7 462 100.0
Prupe.4G269500 Prunus persica HOM05D005230 ORTHO05D006506 6.9e-201 704.1 462 86.1
CSS0035138 Camellia sinensis var. sinensis HOM05D005230 ORTHO05D006506 2.2e-199 699.1 462 85.9
CSS0009799 Camellia sinensis var. sinensis HOM05D005230 ORTHO05D006506 2.9e-199 698.7 462 85.9
CiPaw.13G147000 Carya illinoinensis HOM05D005230 ORTHO05D006506 2.5e-198 695.7 462 86.6
Dinv29329 Davidia involucrata HOM05D005230 ORTHO05D006506 2.6e-195 685.6 462 85.1
MD03G1163000 Malus domestica HOM05D005230 ORTHO05D006506 2.6e-195 685.6 462 84.2
Nn7g36961 Nelumbo nucifera HOM05D005230 ORTHO05D006506 4.4e-195 684.9 464 83.6
Manes.05G199900 Manihot esculenta HOM05D005230 ORTHO05D006506 1.3e-194 683.3 462 83.5
CANSAT54G1170 Cannabis sativa HOM05D005230 ORTHO05D006506 2.8e-194 682.2 462 83.3
Eucgr.B03758 Eucalyptus grandis HOM05D005230 ORTHO05D006506 1.1e-193 680.2 462 83.3
Actinidia16258 Actinidia chinensis HOM05D005230 ORTHO05D006506 1.4e-193 679.9 460 85.0
GSVIVG01002283001 Vitis vinifera HOM05D005230 ORTHO05D006506 1.8e-193 679.5 401 96.8
Actinidia06848 Actinidia chinensis HOM05D005230 ORTHO05D006506 9.1e-193 677.2 460 84.8
Haze_23295 Corylus avellana HOM05D005230 ORTHO05D006506 1.2e-192 676.8 462 84.6
QL01p016185 Quercus lobata HOM05D005230 ORTHO05D006506 5.9e-192 674.5 461 84.4
TWI75G0256 Tripterygium wilfordii HOM05D005230 ORTHO05D006506 2.2e-191 672.5 462 80.7
Rhsim13G0231000 Rhododendron simsii HOM05D005230 ORTHO05D006506 1.2e-189 666.8 460 83.3
Sabra16G0167000 Salix brachista HOM05D005230 ORTHO05D006506 5.2e-188 661.4 459 80.0
Potri.001G271800 Populus trichocarpa HOM05D005230 ORTHO05D006506 6.7e-188 661.0 459 80.0
TWI31G0483 Tripterygium wilfordii HOM05D005230 ORTHO05D006506 1.5e-187 659.8 462 81.4
Aqoxy1G00076 Aquilegia oxysepala HOM05D005230 ORTHO05D006506 5.7e-187 657.9 463 79.9
ECA238G4724 Erigeron canadensis HOM05D005230 ORTHO05D006506 6.3e-186 654.4 460 81.1
Potri.009G066400 Populus trichocarpa HOM05D005230 ORTHO05D006506 1.4e-185 653.3 459 78.6
Lj4g0004497 Lotus japonicus HOM05D005230 ORTHO05D006506 4.1e-185 651.7 461 79.8
Manes.01G177100 Manihot esculenta HOM05D005230 ORTHO05D006506 4.1e-185 651.7 463 80.6
Lsat_1_v5_gn_2_32160 Lactuca sativa HOM05D005230 ORTHO05D006506 5.3e-185 651.4 460 81.1
Ciclev10015197m.g Citrus clementina HOM05D005230 ORTHO05D006506 3.5e-184 648.7 465 80.4
Cpa.g.sc34.203 Carica papaya HOM05D005230 ORTHO05D006506 5.9e-184 647.9 462 81.2
Cc01_g07300 Coffea canephora HOM05D005230 ORTHO05D006506 7.7e-184 647.5 463 81.0
ClCG03G014290 Citrullus lanatus HOM05D005230 ORTHO05D006506 1.0e-183 647.1 462 79.9
Cfa009930 Carpinus fangiana HOM05D005230 ORTHO05D006506 1.3e-183 646.7 441 85.0
COL.COLO4_33253 Corchorus olitorius HOM05D005230 ORTHO05D006506 1.3e-183 646.7 462 78.8
CsaV3_1G041930 Cucumis sativus L. HOM05D005230 ORTHO05D006506 3.8e-183 645.2 462 79.9
Haze_23300 Corylus avellana HOM05D005230 ORTHO05D006506 5.0e-183 644.8 504 70.4
MELO3C015608.2 Cucumis melo HOM05D005230 ORTHO05D006506 6.5e-183 644.4 462 79.9
Glyma.08G113500 Glycine max HOM05D005230 ORTHO05D006506 6.5e-183 644.4 459 80.2
Psat7g073480 Pisum sativum HOM05D005230 ORTHO05D006506 8.5e-183 644.0 459 79.3
CAN.G280.6 Capsicum annuum HOM05D005230 ORTHO05D006506 1.9e-182 642.9 462 81.0
Sabra09G0049500 Salix brachista HOM05D005230 ORTHO05D006506 3.2e-182 642.1 459 78.4
Glyma.05G155700 Glycine max HOM05D005230 ORTHO05D006506 4.2e-182 641.7 459 80.0
Oeu025950.1 Olea europaea HOM05D005230 ORTHO05D006506 4.2e-182 641.7 460 78.5
Atru.chr3.2845 Acer truncatum HOM05D005230 ORTHO05D006506 5.5e-182 641.3 464 73.5
Lalb_Chr07g0186541 Lupinus albus HOM05D005230 ORTHO05D006506 9.4e-182 640.6 459 79.5
Hund07409 Selenicereus undatus HOM05D005230 ORTHO05D006506 1.2e-181 640.2 466 78.5
TPR.G24369 Trifolium pratense HOM05D005230 ORTHO05D006506 2.1e-181 639.4 454 79.5
Thecc.09G252100 Theobroma cacao HOM05D005230 ORTHO05D006506 6.1e-181 637.9 462 78.6
Phvul.002G235800 Phaseolus vulgaris HOM05D005230 ORTHO05D006506 1.8e-180 636.3 459 78.9
PGSC0003DMG400027416 Solanum tuberosum HOM05D005230 ORTHO05D006506 2.3e-180 636.0 462 80.3
Sopen11g029740 Solanum pennellii HOM05D005230 ORTHO05D006506 5.2e-180 634.8 462 80.1
Ca_17953_v3 Cicer arietinum L. HOM05D005230 ORTHO05D006506 1.2e-179 633.6 459 79.1
Solyc11g072090.2 Solanum lycopersicum HOM05D005230 ORTHO05D006506 2.0e-179 632.9 462 79.9
RcHm_v2.0_Chr2g0123421 Rosa chinensis HOM05D005230 ORTHO05D006506 1.7e-178 629.8 462 77.7
Sed0024170 Sechium edule HOM05D005230 ORTHO05D006506 2.2e-178 629.4 462 79.2
VMungo0251G0349 Vigna mungo HOM05D005230 ORTHO05D006506 2.8e-178 629.0 460 78.5
FvH4_1g25390 Fragaria vesca HOM05D005230 ORTHO05D006506 4.8e-178 628.2 462 77.3
arahy.Tifrunner.gnm1.ann1.554KFZ Arachis hypogaea HOM05D005230 ORTHO05D006506 1.1e-177 627.1 459 71.5
arahy.Tifrunner.gnm1.ann1.YWPQ0A Arachis hypogaea HOM05D005230 ORTHO05D006506 1.1e-177 627.1 459 71.5
MSTRG.21320 Avicennia marina HOM05D005230 ORTHO05D006506 1.1e-177 627.1 462 77.7
DCAR_031608 Daucus carota HOM05D005230 ORTHO05D006506 1.1e-177 627.1 462 77.3
HanXRQChr13g0402151 Helianthus annuus HOM05D005230 ORTHO05D006506 2.4e-177 625.9 459 77.1
AUR62006575 Chenopodium quinoa HOM05D005230 ORTHO05D006506 5.4e-177 624.8 464 78.9
Medtr8g085640 Medicago truncatula HOM05D005230 ORTHO05D006506 7.0e-177 624.4 454 78.0
FAN23G0348 Fragaria x ananassa HOM05D005230 ORTHO05D006506 1.2e-176 623.6 462 76.8
AUR62000229 Chenopodium quinoa HOM05D005230 ORTHO05D006506 1.6e-176 623.2 464 78.4
FAN28G1729 Fragaria x ananassa HOM05D005230 ORTHO05D006506 2.0e-176 622.9 462 76.4
FAN19G0408 Fragaria x ananassa HOM05D005230 ORTHO05D006506 1.1e-174 617.1 461 76.1
Duzib168G0825 Durio zibethinus HOM05D005230 ORTHO05D006506 3.2e-174 615.5 462 76.0
Peaxi162Scf00978g00317 Petunia axillaris HOM05D005230 ORTHO05D006506 7.2e-174 614.4 462 77.3
SGA_v2.0_scaffold29G12151 Striga asiatica HOM05D005230 ORTHO05D006506 2.1e-173 612.8 462 74.9
Aa31LG1G8850 Aethionema arabicum HOM05D005230 ORTHO05D006506 3.6e-173 612.1 459 75.6
PSO339G0973 Papaver somniferum HOM05D005230 ORTHO05D006506 1.4e-172 610.1 460 77.2
PSO384G0943 Papaver somniferum HOM05D005230 ORTHO05D006506 3.0e-172 609.0 460 77.2
THA.LOC104811208 Tarenaya hassleriana HOM05D005230 ORTHO05D006506 6.8e-172 607.8 459 76.3
Duzib150G1312 Durio zibethinus HOM05D005230 ORTHO05D006506 1.5e-171 606.7 462 75.5
Lj2C810G6 Lonicera japonica HOM05D005230 ORTHO05D006506 8.3e-170 600.9 463 74.5
Oeu032061.2 Olea europaea HOM05D005230 ORTHO05D006506 1.4e-169 600.1 493 72.2
EL10Ac4g10073 Beta vulgaris HOM05D005230 ORTHO05D006506 5.4e-169 598.2 465 68.8
Nitab4.5_0002161g0080 Nicotiana tabacum HOM05D005230 ORTHO05D006506 1.2e-168 597.0 462 77.3
Migut.D00707 Erythranthe guttata HOM05D005230 ORTHO05D006506 4.5e-168 595.1 476 73.5
SalBow6G0054 Salvia bowleyana HOM05D005230 ORTHO05D006506 1.0e-167 594.0 483 71.0
A10p20220 Brassica napus HOM05D005230 ORTHO05D006506 2.1e-165 586.3 460 73.7
Gorai.006G123300 Gossypium raimondii HOM05D005230 ORTHO05D006506 6.1e-165 584.7 462 73.8
Gohir.D08G019200 Gossypium hirsutum HOM05D005230 ORTHO05D006506 4.0e-164 582.0 462 72.5
FAN26G2809 Fragaria x ananassa HOM05D005230 ORTHO05D006506 5.2e-164 581.6 551 65.7
Gorai.004G013700 Gossypium raimondii HOM05D005230 ORTHO05D006506 6.8e-164 581.3 462 72.5
BraA10t44093Z Brassica rapa HOM05D005230 ORTHO05D006506 1.5e-163 580.1 465 72.9
Gohir.D09G105900 Gossypium hirsutum HOM05D005230 ORTHO05D006506 3.4e-163 578.9 462 73.6
MBI13_g00890_MAGBIO Magnolia biondii HOM05D005230 ORTHO05D006506 3.4e-163 578.9 462 67.3
A02p05570 Brassica napus HOM05D005230 ORTHO05D006506 7.5e-163 577.8 456 73.7
Gohir.A08G009200 Gossypium hirsutum HOM05D005230 ORTHO05D006506 4.9e-162 575.1 462 72.5
BNapus_Darmor_BZH_scaffold_38p02380 Brassica napus HOM05D005230 ORTHO05D006506 1.8e-161 573.2 456 73.2
BolC2t06957H Brassica oleracea HOM05D005230 ORTHO05D006506 3.2e-161 572.4 456 73.2
BraA02t05508Z Brassica rapa HOM05D005230 ORTHO05D006506 3.2e-161 572.4 456 73.0
Gohir.A09G109300 Gossypium hirsutum HOM05D005230 ORTHO05D006506 5.4e-161 571.6 462 72.1
ATR0307G025 Amborella trichopoda HOM05D005230 ORTHO05D006506 7.0e-161 571.2 461 71.6
CDE08G0498 Ceratophyllum demersum HOM05D005230 ORTHO05D006506 1.2e-160 570.5 465 64.9
CARHR193430 Cardamine hirsuta HOM05D005230 ORTHO05D006506 4.3e-158 562.0 387 74.2
Thhalv10013503m.g Eutrema salsugineum HOM05D005230 ORTHO05D006506 2.8e-157 559.3 389 73.8
Ah.06g194900 Amaranthus hybridus HOM05D005230 ORTHO05D006506 4.0e-156 555.4 463 71.1
Sp6g24920 Schrenkiella parvula HOM05D005230 ORTHO05D006506 1.2e-155 553.9 387 73.1
AL6G30990 Arabidopsis lyrata HOM05D005230 ORTHO05D006506 8.3e-154 547.7 389 72.8
AT5G19485 Arabidopsis thaliana HOM05D005230 ORTHO05D006506 5.4e-153 545.0 388 73.2
Carub.0006s1783 Capsella rubella HOM05D005230 ORTHO05D006506 7.0e-153 544.7 460 70.4
Os06g0338900 Oryza sativa ssp. japonica HOM05D005230 ORTHO05D006506 3.0e-151 539.3 459 68.2
HPP92_016891 Vanilla planifolia HOM05D005230 ORTHO05D006506 1.2e-149 533.9 459 69.1
vmacro04223 Vaccinium macrocarpon HOM05D005230 ORTHO05D006506 1.0e-143 514.2 496 65.7
SEGI_36393 Sequoiadendron giganteum HOM05D005230 ORTHO05D006506 1.3e-143 513.8 463 66.1
Nitab4.5_0002567g0160 Nicotiana tabacum HOM05D005230 ORTHO05D006506 1.1e-142 510.8 462 62.6
Sc16g0010870 Simmondsia chinensis HOM05D005230 ORTHO05D006506 1.2e-139 500.7 384 77.6
PGR102G1412 Punica granatum HOM05D005230 ORTHO05D006506 2.7e-136 489.6 462 67.3
unitig_0.g309 Utricularia gibba HOM05D005230 ORTHO05D006506 8.6e-135 484.6 462 63.4
Zm00001eb051600 Zea mays HOM05D005230 ORTHO05D006506 1.9e-121 440.3 364 65.1
Pp3c16_600 Physcomitrium patens HOM05D005230 ORTHO05D006506 1.3e-117 427.6 464 57.8
Mapoly0070s0045 Marchantia polymorpha HOM05D005230 ORTHO05D006506 1.6e-112 410.6 469 53.1
TAR628G1140 Trochodendron aralioides HOM05D005230 ORTHO05D006506 4.5e-107 392.5 300 68.7
Dinv24610 Davidia involucrata HOM05D005230 ORTHO05D006506 7.4e-102 375.2 318 66.4
SMO117G0151 Selaginella moellendorffii HOM05D005230 ORTHO05D006506 4.8e-101 372.5 462 49.6
C09p56810 Brassica napus HOM05D005230 ORTHO05D006506 2.7e-80 303.5 290 67.9
CBR_g54067 Chara braunii HOM05D005230 ORTHO05D006506 2.2e-66 257.3 390 39.2
Mapoly0050s0011 Marchantia polymorpha HOM05D005230 ORTHO05D006506 1.4e-63 248.1 395 39.7
BolC9t58535H Brassica oleracea HOM05D005230 ORTHO05D006506 2.4e-60 237.3 189 71.4
Mapoly0050s0012 Marchantia polymorpha HOM05D005230 ORTHO05D006506 2.9e-58 230.3 242 53.7
Cre03.g207825 Chlamydomonas reinhardtii HOM05D005230 ORTHO05D006506 6.8e-55 219.2 505 39.6
MCO03G336 Micromonas commoda HOM05D005230 ORTHO05D006506 5.2e-47 193.0 398 31.7
PRCOL_00006600 Prasinoderma coloniale HOM05D005230 ORTHO05D006506 3.4e-46 190.3 503 35.8
Duzib150G0729 Durio zibethinus HOM05D005230 ORTHO05D006506 1.3e-45 188.3 161 65.2
CSS0018745 Camellia sinensis var. sinensis HOM05D005230 ORTHO05D006506 1.7e-45 188.0 150 68.0
Gohir.A05G264150 Gossypium hirsutum HOM05D005230 ORTHO05D006506 1.2e-43 181.8 123 74.8
VMungo0720G0475 Vigna mungo HOM05D005230 ORTHO05D051605 1.6e-40 171.4 134 63.4
FvH4_4g06340 Fragaria vesca HOM05D005230 ORTHO05D006506 4.1e-36 156.8 121 71.1
Mapoly0070s0046 Marchantia polymorpha HOM05D005230 ORTHO05D006506 5.2e-31 139.8 156 53.2
VMungo0251G1518 Vigna mungo HOM05D005230 ORTHO05D051605 5.6e-25 119.8 220 38.6
Psat2g003760 Pisum sativum HOM05D005230 ORTHO05D006506 1.8e-23 114.8 94 62.8
BcaC04g24210 Brassica carinata HOM05D005230 ORTHO05D006506 2.2e-21 107.8 68 83.8
Nn7g36957 Nelumbo nucifera HOM05D005230 ORTHO05D006506 1.0e-18 99.0 55 94.5
Sed0001059 Sechium edule HOM05D005230 ORTHO05D006506 1.3e-18 98.6 101 83.2
VMungo1309G2461 Vigna mungo HOM05D002467 ORTHO05D013374 2.5e-17 94.4 75 69.3
VMungo1383G0996 Vigna mungo HOM05D002467 ORTHO05D013374 1.9e-12 78.2 59 71.2
Dinv24611 Davidia involucrata HOM05D005230 ORTHO05D006506 2.1e-11 74.7 50 86.0
TAR623G0477 Trochodendron aralioides HOM05D005230 ORTHO05D006506 6.0e-11 73.2 97 49.5
Psat0s3158g0040 Pisum sativum HOM05D005230 ORTHO05D320643 1.9e-09 68.2 60 60.0
Psat5g186320 Pisum sativum HOM05D000280 ORTHO05D004446 2.5e-09 67.8 104 41.3
Psat2g028360 Pisum sativum HOM05D005230 ORTHO05D006506 5.6e-09 66.6 57 63.2
Psat0s472g0120 Pisum sativum HOM05D005230 ORTHO05D023087 9.6e-09 65.9 62 58.1
MELO3C033360.2 Cucumis melo HOM05D005230 ORTHO05D013374 1.4e-07 62.0 109 42.2
Psat4g142680 Pisum sativum HOM05D000493 ORTHO05D001638 1.4e-07 62.0 61 55.7
Peaxi162Scf00225g00424 Petunia axillaris HOM05D004145 ORTHO05D004879 3.1e-07 60.8 247 25.1
Psat4g142760 Pisum sativum HOM05D000493 ORTHO05D004446 3.1e-07 60.8 67 49.3
Solyc01g098180.3 Solanum lycopersicum HOM05D004145 ORTHO05D004879 4.5e-06 57.0 249 24.5
Sopen01g041760 Solanum pennellii HOM05D004145 ORTHO05D004879 4.5e-06 57.0 249 24.5
PRCOL_00001177 Prasinoderma coloniale HOM05D004145 ORTHO05D004879 5.8e-06 56.6 247 23.5
Nitab4.5_0000245g0100 Nicotiana tabacum HOM05D004145 ORTHO05D004879 7.6e-06 56.2 247 24.7
GSVIVG01026774001 Vitis vinifera HOM05D004145 ORTHO05D004879 7.6e-06 56.2 247 23.9
Cre12.g502200 Chlamydomonas reinhardtii HOM05D004145 ORTHO05D004879 9.9e-06 55.8 409 20.0


User provided reference genes

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