Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01020074001 Vitis vinifera HOM05D004054 ORTHO05D004945 0.0e+00 1624.8 833 100.0
GSVIVG01036940001 Vitis vinifera HOM05D004054 ORTHO05D004945 0.0e+00 1311.2 867 78.8
TAR362G0462 Trochodendron aralioides HOM05D004054 ORTHO05D004945 0.0e+00 1111.3 878 68.6
QL03p065666 Quercus lobata HOM05D004054 ORTHO05D004945 0.0e+00 1082.8 873 66.6
Cfa009037 Carpinus fangiana HOM05D004054 ORTHO05D004945 3.3e-310 1068.1 873 66.8
Actinidia05393 Actinidia chinensis HOM05D004054 ORTHO05D004945 5.8e-307 1057.4 875 64.8
Rhsim01G0215700 Rhododendron simsii HOM05D004054 ORTHO05D004945 6.4e-306 1053.9 880 64.3
Thecc.02G355300 Theobroma cacao HOM05D004054 ORTHO05D004945 4.8e-301 1037.7 878 64.4
Duzib268G1532 Durio zibethinus HOM05D004054 ORTHO05D004945 2.6e-299 1031.9 872 63.8
Haze_12066 Corylus avellana HOM05D004054 ORTHO05D004945 6.7e-295 1017.3 976 59.4
Ciclev10030693m.g Citrus clementina HOM05D004054 ORTHO05D004945 4.8e-293 1011.1 874 63.0
Prupe.1G267800 Prunus persica HOM05D004054 ORTHO05D004945 1.1e-292 1010.0 866 64.3
MD13G1079000 Malus domestica HOM05D004054 ORTHO05D004945 2.4e-292 1008.8 859 64.1
Gorai.013G077900 Gossypium raimondii HOM05D004054 ORTHO05D004945 1.4e-289 999.6 870 62.9
Gohir.A13G052300 Gossypium hirsutum HOM05D004054 ORTHO05D004945 5.1e-287 991.1 870 62.3
Gohir.D13G068400 Gossypium hirsutum HOM05D004054 ORTHO05D004945 5.7e-286 987.6 870 62.4
RcHm_v2.0_Chr4g0440641 Rosa chinensis HOM05D004054 ORTHO05D004945 2.2e-285 985.7 854 63.1
MBI11_g00106_MAGBIO Magnolia biondii HOM05D004054 ORTHO05D004945 1.4e-284 983.0 885 61.8
RcHm_v2.0_Chr1g0353921 Rosa chinensis HOM05D004054 ORTHO05D004945 4.1e-284 981.5 864 62.7
COL.COLO4_07923 Corchorus olitorius HOM05D004054 ORTHO05D004945 9.0e-284 980.3 880 62.4
MBI17_g39912_MAGBIO Magnolia biondii HOM05D004054 ORTHO05D004945 7.7e-283 977.2 862 63.0
TWI36G0714 Tripterygium wilfordii HOM05D004054 ORTHO05D004945 5.0e-282 974.5 874 61.3
FAN12G3951 Fragaria x ananassa HOM05D004054 ORTHO05D004945 6.5e-282 974.2 851 63.0
Duzib248G1634 Durio zibethinus HOM05D004054 ORTHO05D004945 1.6e-280 969.5 877 61.3
RcHm_v2.0_Chr1g0331881 Rosa chinensis HOM05D004054 ORTHO05D004945 2.7e-280 968.8 864 62.0
FvH4_4g31960 Fragaria vesca HOM05D004054 ORTHO05D004945 6.1e-280 967.6 851 62.5
MD16G1078700 Malus domestica HOM05D004054 ORTHO05D004945 1.4e-279 966.5 769 67.1
Atru.chr11.1851 Acer truncatum HOM05D004054 ORTHO05D004945 7.4e-278 960.7 879 61.3
FAN22G1878 Fragaria x ananassa HOM05D004054 ORTHO05D004945 2.2e-277 959.1 862 61.8
CsaV3_5G032370 Cucumis sativus L. HOM05D004054 ORTHO05D004945 4.8e-277 958.0 875 60.8
ClCG05G024580 Citrullus lanatus HOM05D004054 ORTHO05D004945 8.2e-277 957.2 895 59.8
FAN07G1439 Fragaria x ananassa HOM05D004054 ORTHO05D004945 8.2e-277 957.2 862 62.1
FAN17G1509 Fragaria x ananassa HOM05D004054 ORTHO05D004945 4.5e-275 951.4 867 61.4
CSS0048330 Camellia sinensis var. sinensis HOM05D004054 ORTHO05D004945 1.3e-274 949.9 857 61.4
PGR102G2139 Punica granatum HOM05D004054 ORTHO05D004945 2.5e-273 945.7 876 59.5
Eucgr.B03410 Eucalyptus grandis HOM05D004054 ORTHO05D004945 3.2e-273 945.3 873 59.6
Potri.010G033900 Populus trichocarpa HOM05D004054 ORTHO05D004945 9.4e-273 943.7 867 62.9
Gorai.008G182900 Gossypium raimondii HOM05D004054 ORTHO05D004945 7.9e-272 940.6 867 58.8
vmacro07429 Vaccinium macrocarpon HOM05D004054 ORTHO05D004945 7.9e-272 940.6 954 56.7
Hma1.2p1_1545F.1_g289900 Hydrangea macrophylla HOM05D004054 ORTHO05D004945 1.0e-271 940.3 758 67.5
Aqoxy5G00175 Aquilegia oxysepala HOM05D004054 ORTHO05D004945 8.8e-271 937.2 878 59.9
PSO832G3945 Papaver somniferum HOM05D004054 ORTHO05D004945 1.1e-268 930.2 880 59.5
Ca_22853_v3 Cicer arietinum L. HOM05D004054 ORTHO05D004945 1.4e-268 929.9 878 58.0
Sed0026408 Sechium edule HOM05D004054 ORTHO05D004945 5.3e-268 927.9 875 58.4
Gohir.D12G170300 Gossypium hirsutum HOM05D004054 ORTHO05D004945 4.5e-267 924.9 842 59.1
Glyma.08G296300 Glycine max HOM05D004054 ORTHO05D004945 8.5e-266 920.6 876 58.6
Glyma.18G126000 Glycine max HOM05D004054 ORTHO05D004945 9.4e-265 917.1 882 57.7
arahy.Tifrunner.gnm1.ann1.K6PP8H Arachis hypogaea HOM05D004054 ORTHO05D004945 6.1e-264 914.4 869 58.1
Dinv24955 Davidia involucrata HOM05D004054 ORTHO05D004945 8.8e-263 910.6 725 68.1
Sabra10G0030700 Salix brachista HOM05D004054 ORTHO05D004945 1.4e-260 903.3 933 57.7
PSO764G0096 Papaver somniferum HOM05D004054 ORTHO05D004945 1.8e-260 902.9 880 58.3
MELO3C012068.2 Cucumis melo HOM05D004054 ORTHO05D004945 3.1e-260 902.1 862 58.6
Sc11g0001680 Simmondsia chinensis HOM05D004054 ORTHO05D004945 4.1e-260 901.7 872 57.9
Peaxi162Scf00209g00326 Petunia axillaris HOM05D004054 ORTHO05D004945 3.5e-259 898.7 905 56.5
Phvul.003G069800 Phaseolus vulgaris HOM05D004054 ORTHO05D004945 3.5e-259 898.7 880 57.6
Medtr8g469270 Medicago truncatula HOM05D004054 ORTHO05D004945 1.9e-257 892.9 883 56.9
VMungo0251G1664 Vigna mungo HOM05D004054 ORTHO05D004945 1.9e-257 892.9 877 57.1
Lalb_Chr16g0392581 Lupinus albus HOM05D004054 ORTHO05D004945 2.1e-256 889.4 892 56.4
Lj4g0012636 Lotus japonicus HOM05D004054 ORTHO05D004945 2.7e-256 889.0 878 57.1
DCAR_027382 Daucus carota HOM05D004054 ORTHO05D004945 4.7e-256 888.3 874 57.1
Lsat_1_v5_gn_8_54080 Lactuca sativa HOM05D004054 ORTHO05D004945 5.2e-255 884.8 849 57.4
Thhalv10020058m.g Eutrema salsugineum HOM05D004054 ORTHO05D004945 1.7e-253 879.8 882 56.5
Sopen05g002990 Solanum pennellii HOM05D004054 ORTHO05D004945 3.7e-253 878.6 874 56.8
THA.LOC104820344 Tarenaya hassleriana HOM05D004054 ORTHO05D004945 3.7e-253 878.6 872 56.1
Nitab4.5_0009649g0020 Nicotiana tabacum HOM05D004054 ORTHO05D004945 1.8e-252 876.3 854 58.4
AT3G17900 Arabidopsis thaliana HOM05D004054 ORTHO05D004945 5.4e-252 874.8 877 56.0
TPR.G33257 Trifolium pratense HOM05D004054 ORTHO05D004945 5.4e-252 874.8 877 56.1
Carub.0003s1763 Capsella rubella HOM05D004054 ORTHO05D004945 4.5e-251 871.7 880 55.9
Cc11_g13490 Coffea canephora HOM05D004054 ORTHO05D004945 8.5e-250 867.5 876 56.3
AL3G31070 Arabidopsis lyrata HOM05D004054 ORTHO05D004945 1.1e-249 867.1 878 55.6
Psat4g132120 Pisum sativum HOM05D004054 ORTHO05D004945 5.5e-249 864.8 882 56.1
Sp3g16020 Schrenkiella parvula HOM05D004054 ORTHO05D004945 9.5e-249 864.0 878 55.5
Hund25271 Selenicereus undatus HOM05D004054 ORTHO05D004945 4.4e-246 855.1 844 57.8
CARHR093230 Cardamine hirsuta HOM05D004054 ORTHO05D004945 1.4e-244 850.1 872 54.9
Migut.L01344 Erythranthe guttata HOM05D004054 ORTHO05D004945 3.1e-244 849.0 875 56.6
Nitab4.5_0008717g0030 Nicotiana tabacum HOM05D004054 ORTHO05D004945 3.1e-244 849.0 851 57.3
MSTRG.671 Avicennia marina HOM05D004054 ORTHO05D004945 1.2e-243 847.0 873 56.0
SalBow2G0733 Salvia bowleyana HOM05D004054 ORTHO05D004945 1.2e-243 847.0 960 52.6
Manes.05G096500 Manihot esculenta HOM05D004054 ORTHO05D004945 6.6e-242 841.3 746 62.7
Oeu011693.1 Olea europaea HOM05D004054 ORTHO05D004945 1.5e-241 840.1 785 59.1
Oeu028539.1 Olea europaea HOM05D004054 ORTHO05D004945 3.3e-241 839.0 910 53.1
Nn3g19739 Nelumbo nucifera HOM05D004054 ORTHO05D004945 7.3e-241 837.8 729 62.8
Aa31LG8G4770 Aethionema arabicum HOM05D004054 ORTHO05D004945 1.8e-239 833.2 927 52.0
SGA_v2.0_scaffold302G47866 Striga asiatica HOM05D004054 ORTHO05D004945 4.4e-238 828.6 880 54.8
ECA247G4086 Erigeron canadensis HOM05D004054 ORTHO05D004945 1.6e-235 820.1 879 54.7
C03p49280 Brassica napus HOM05D004054 ORTHO05D004945 5.9e-235 818.1 876 54.6
BcaB04g20809 Brassica carinata HOM05D004054 ORTHO05D004945 1.0e-234 817.4 877 54.4
BraA03t13202Z Brassica rapa HOM05D004054 ORTHO05D004945 8.6e-234 814.3 879 53.8
Psat2g124400 Pisum sativum HOM05D004054 ORTHO05D004945 3.3e-233 812.4 871 53.0
AUR62026447 Chenopodium quinoa HOM05D004054 ORTHO05D004945 9.5e-233 810.8 859 55.1
SalBow2G2854 Salvia bowleyana HOM05D004054 ORTHO05D004945 2.1e-232 809.7 1040 48.3
BolC3t17216H Brassica oleracea HOM05D004054 ORTHO05D004945 2.0e-230 803.1 875 53.8
A01p36490 Brassica napus HOM05D004054 ORTHO05D004945 3.4e-230 802.4 873 53.4
Glyma.02G021900 Glycine max HOM05D004054 ORTHO05D004945 3.4e-230 802.4 872 53.4
HanXRQChr12g0369801 Helianthus annuus HOM05D004054 ORTHO05D004945 8.3e-229 797.7 882 53.9
BraA01t03713Z Brassica rapa HOM05D004054 ORTHO05D004945 2.7e-227 792.7 874 53.5
BcaC09g48754 Brassica carinata HOM05D004054 ORTHO05D004945 6.0e-227 791.6 876 53.1
BolC1t04586H Brassica oleracea HOM05D004054 ORTHO05D004945 6.0e-227 791.6 878 52.8
C01p46250 Brassica napus HOM05D004054 ORTHO05D004945 1.0e-226 790.8 878 53.0
AUR62026254 Chenopodium quinoa HOM05D004054 ORTHO05D004945 2.3e-226 789.6 864 54.6
ATR0564G248 Amborella trichopoda HOM05D004054 ORTHO05D004945 7.3e-225 784.6 874 53.0
Ca_04741_v3 Cicer arietinum L. HOM05D004054 ORTHO05D004945 7.5e-222 774.6 855 52.6
Lalb_Chr09g0335271 Lupinus albus HOM05D004054 ORTHO05D004945 2.2e-221 773.1 808 55.3
BcaB04g18970 Brassica carinata HOM05D004054 ORTHO05D004945 8.3e-221 771.2 878 52.1
HPP92_011033 Vanilla planifolia HOM05D004054 ORTHO05D004945 9.2e-220 767.7 874 50.2
Medtr5g038440 Medicago truncatula HOM05D004054 ORTHO05D004945 9.5e-217 757.7 867 51.9
CDE09G0195 Ceratophyllum demersum HOM05D004054 ORTHO05D004945 2.0e-214 750.0 884 48.8
BcaC01g03722 Brassica carinata HOM05D004054 ORTHO05D004945 6.4e-213 745.0 878 51.4
Hund05913 Selenicereus undatus HOM05D004054 ORTHO05D004945 6.6e-210 734.9 819 53.1
arahy.Tifrunner.gnm1.ann1.S53SYG Arachis hypogaea HOM05D004054 ORTHO05D004945 1.6e-208 730.3 836 50.4
TPR.G13762 Trifolium pratense HOM05D004054 ORTHO05D004945 1.4e-207 727.2 799 52.8
Nn1g02896 Nelumbo nucifera HOM05D004054 ORTHO05D004945 3.1e-207 726.1 840 50.5
A03p40440 Brassica napus HOM05D004054 ORTHO05D004945 1.5e-206 723.8 752 55.5
Lj2g0020807 Lotus japonicus HOM05D004054 ORTHO05D004945 3.4e-206 722.6 732 55.6
Lalb_Chr17g0340361 Lupinus albus HOM05D004054 ORTHO05D004945 1.9e-204 716.8 811 51.7
EL10Ac6g13147 Beta vulgaris HOM05D004054 ORTHO05D004945 4.0e-199 699.1 876 48.5
Solyc05g007030.4 Solanum lycopersicum HOM05D004054 ORTHO05D004945 2.4e-196 689.9 605 62.1
Cpa.g.sc5.276 Carica papaya HOM05D004054 ORTHO05D004945 7.1e-196 688.3 561 65.6
arahy.Tifrunner.gnm1.ann1.B2D650 Arachis hypogaea HOM05D004054 ORTHO05D004945 4.6e-195 685.6 836 48.0
Zm00001eb409770 Zea mays HOM05D004054 ORTHO05D004945 3.7e-192 676.0 854 48.1
SEGI_39580 Sequoiadendron giganteum HOM05D004054 ORTHO05D004945 4.3e-185 652.5 914 44.4
Gohir.A12G166800 Gossypium hirsutum HOM05D004054 ORTHO05D004945 2.2e-176 623.6 557 61.2
CDE02G2379 Ceratophyllum demersum HOM05D004054 ORTHO05D004945 1.0e-173 614.8 705 49.5
CiPaw.06G080700 Carya illinoinensis HOM05D004054 ORTHO05D004945 5.5e-172 609.0 456 71.5
VMungo1215G1372 Vigna mungo HOM05D004054 ORTHO05D004945 1.9e-169 600.5 1114 37.5
ECA234G1496 Erigeron canadensis HOM05D004054 ORTHO05D004945 6.1e-163 578.9 819 45.1
unitig_22.g6528 Utricularia gibba HOM05D004054 ORTHO05D004945 5.1e-162 575.9 887 43.5
Lsat_1_v5_gn_4_9281 Lactuca sativa HOM05D004054 ORTHO05D004945 6.5e-157 558.9 826 42.5
HanXRQChr03g0092771 Helianthus annuus HOM05D004054 ORTHO05D004945 4.7e-155 552.7 748 44.4
Ah.03g132020 Amaranthus hybridus HOM05D004054 ORTHO05D004945 1.4e-135 488.0 587 51.8
Phvul.002G066700 Phaseolus vulgaris HOM05D004054 ORTHO05D004945 4.1e-135 486.5 573 50.1
Mapoly0224s0002 Marchantia polymorpha HOM05D004054 ORTHO05D004945 1.2e-134 485.0 851 38.1
Zm00001eb066230 Zea mays HOM05D004054 ORTHO05D004945 7.8e-126 455.7 600 46.8
CiPaw.06G080600 Carya illinoinensis HOM05D004054 ORTHO05D004945 1.6e-110 404.8 364 61.5
Pp3c16_680 Physcomitrium patens HOM05D004054 ORTHO05D004945 2.1e-110 404.4 800 35.1
unitig_8.g3947 Utricularia gibba HOM05D004054 ORTHO05D004945 1.9e-103 381.3 554 42.2
SMO119G0368 Selaginella moellendorffii HOM05D004054 ORTHO05D004945 5.4e-95 353.2 640 35.6
AagrBONN_evm.TU.Sc2ySwM_228.4114 Anthoceros agrestis HOM05D004054 ORTHO05D004945 6.2e-91 339.7 729 34.3
Psat0s2845g0120 Pisum sativum HOM05D004054 ORTHO05D004945 4.0e-90 337.0 445 47.9
Cpa.g.sc5.277 Carica papaya HOM05D004054 ORTHO05D004945 2.1e-86 324.7 312 57.1
Phvul.002G066500 Phaseolus vulgaris HOM05D004054 ORTHO05D004945 1.0e-77 295.8 291 57.7
Potri.008G194566 Populus trichocarpa HOM05D004054 ORTHO05D004945 1.1e-66 259.2 253 58.9
Gohir.A12G166900 Gossypium hirsutum HOM05D004054 ORTHO05D004945 1.2e-62 245.7 245 53.1
Potri.008G194632 Populus trichocarpa HOM05D004054 ORTHO05D004945 1.6e-62 245.4 195 69.2
MSTRG.2359 Avicennia marina HOM05D004054 ORTHO05D004945 3.6e-46 191.0 173 60.7
RcHm_v2.0_Chr1g0331861 Rosa chinensis HOM05D004054 ORTHO05D004945 1.1e-39 169.5 138 63.8
C03p36410 Brassica napus HOM05D004054 ORTHO05D004945 1.4e-21 109.4 178 42.7
BolC3t15954H Brassica oleracea HOM05D004054 ORTHO05D004945 1.4e-21 109.4 178 42.7
CBR_g39858 Chara braunii HOM05D004054 ORTHO05D009492 1.5e-20 105.9 328 26.8
C02p33030 Brassica napus HOM05D004054 ORTHO05D004945 2.6e-20 105.1 165 41.2
unitig_8.g3946 Utricularia gibba HOM05D004054 ORTHO05D004945 8.3e-19 100.1 175 35.4
C08p43480 Brassica napus HOM05D004054 ORTHO05D004945 3.1e-18 98.2 132 44.7
PGSC0003DMG402017622 Solanum tuberosum HOM05D004054 ORTHO05D004945 2.0e-17 95.5 104 49.0
Lalb_Chr17g0340371 Lupinus albus HOM05D004054 ORTHO05D004945 7.7e-17 93.6 60 80.0
A05p04500 Brassica napus HOM05D004054 ORTHO05D004945 1.3e-16 92.8 157 42.0
C03p62480 Brassica napus HOM05D004054 ORTHO05D004945 1.3e-16 92.8 157 42.0
CAN.G793.43 Capsicum annuum HOM05D004054 ORTHO05D004945 2.9e-16 91.7 177 41.8
MBI09_g47007_MAGBIO Magnolia biondii HOM05D003023 ORTHO05D018021 1.8e-13 82.4 96 50.0
A01p41860 Brassica napus HOM05D004054 ORTHO05D004945 4.4e-12 77.8 79 51.9
CBR_g39856 Chara braunii HOM05D000019 ORTHO05D000353 2.8e-11 75.1 219 25.6
Lsat_1_v5_gn_7_73540 Lactuca sativa HOM05D004054 ORTHO05D004945 4.9e-11 74.3 76 50.0
C06p17170 Brassica napus HOM05D004054 ORTHO05D004945 1.1e-10 73.2 146 35.6
Lsat_1_v5_gn_3_52120 Lactuca sativa HOM05D004054 ORTHO05D004945 3.1e-10 71.6 76 47.4
Dinv34201 Davidia involucrata HOM05D004054 ORTHO05D004945 2.0e-09 68.9 60 60.0
Aqoxy4G02344 Aquilegia oxysepala HOM05D004054 ORTHO05D004945 3.5e-09 68.2 71 50.7
C06p10280 Brassica napus HOM05D011797 ORTHO05D012335 3.5e-09 68.2 37 91.9
Oeu011694.1 Olea europaea HOM05D004054 ORTHO05D049449 5.9e-09 67.4 97 46.4
A06p30220 Brassica napus HOM05D003604 ORTHO05D004110 3.9e-08 64.7 78 47.4
CBR_g39853 Chara braunii HOM05D000019 ORTHO05D000002 8.6e-08 63.5 47 61.7
BcaC08g44394 Brassica carinata HOM05D004054 ORTHO05D004945 1.5e-07 62.8 43 65.1
BolC3t18505H Brassica oleracea HOM05D004054 ORTHO05D004945 4.3e-07 61.2 175 32.6
Rhsim03G0069200 Rhododendron simsii HOM05D000046 ORTHO05D001818 7.3e-07 60.5 74 45.9


User provided reference genes

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