Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01020010001 Vitis vinifera HOM05D004366 ORTHO05D005058 8.8e-114 413.7 217 100.0
Atru.chr11.1817 Acer truncatum HOM05D004366 ORTHO05D005058 1.3e-69 266.9 168 81.5
Actinidia31203 Actinidia chinensis HOM05D004366 ORTHO05D005058 2.5e-68 262.7 168 81.0
Ciclev10032771m.g Citrus clementina HOM05D004366 ORTHO05D005058 4.3e-68 261.9 187 73.8
Sc11g0001840 Simmondsia chinensis HOM05D004366 ORTHO05D005058 4.3e-68 261.9 189 74.1
Lj3C1038T15 Lonicera japonica HOM05D004366 ORTHO05D005058 7.3e-68 261.2 168 78.6
Eucgr.B03429 Eucalyptus grandis HOM05D004366 ORTHO05D005058 3.6e-67 258.8 187 74.3
Peaxi162Scf00026g03112 Petunia axillaris HOM05D004366 ORTHO05D005058 2.3e-66 256.1 168 78.6
CSS0021388 Camellia sinensis var. sinensis HOM05D004366 ORTHO05D005058 3.1e-66 255.8 168 79.8
Prupe.1G272700 Prunus persica HOM05D004366 ORTHO05D005058 4.0e-66 255.4 167 78.4
Rhsim12G0062000 Rhododendron simsii HOM05D004366 ORTHO05D005058 4.0e-66 255.4 168 79.2
TWI12G0004 Tripterygium wilfordii HOM05D004366 ORTHO05D005058 4.0e-66 255.4 189 72.5
Manes.01G186800 Manihot esculenta HOM05D004366 ORTHO05D005058 6.8e-66 254.6 168 76.8
CiPaw.06G083500 Carya illinoinensis HOM05D004366 ORTHO05D005058 8.9e-66 254.2 189 70.9
Thecc.02G350500 Theobroma cacao HOM05D004366 ORTHO05D005058 8.9e-66 254.2 165 79.4
CSS0003416 Camellia sinensis var. sinensis HOM05D004366 ORTHO05D005058 1.2e-65 253.8 168 79.2
SalBow2G0488 Salvia bowleyana HOM05D004366 ORTHO05D005058 1.5e-65 253.4 188 71.8
Nitab4.5_0000141g0240 Nicotiana tabacum HOM05D004366 ORTHO05D005058 7.6e-65 251.1 189 69.8
AUR62005764 Chenopodium quinoa HOM05D004366 ORTHO05D005058 9.9e-65 250.8 167 77.8
Sed0027317 Sechium edule HOM05D004366 ORTHO05D005058 9.9e-65 250.8 166 76.5
Nitab4.5_0005950g0010 Nicotiana tabacum HOM05D004366 ORTHO05D005058 1.3e-64 250.4 164 78.0
QL03p064520 Quercus lobata HOM05D004366 ORTHO05D005058 1.3e-64 250.4 189 70.4
EL10Ac6g13190 Beta vulgaris HOM05D004366 ORTHO05D005058 2.2e-64 249.6 167 76.0
Cpa.g.sc128.8 Carica papaya HOM05D004366 ORTHO05D005058 2.2e-64 249.6 167 77.8
Hund05888 Selenicereus undatus HOM05D004366 ORTHO05D005058 2.2e-64 249.6 165 78.8
AUR62028793 Chenopodium quinoa HOM05D004366 ORTHO05D005058 6.4e-64 248.1 163 78.5
Gohir.D13G074000 Gossypium hirsutum HOM05D004366 ORTHO05D005058 6.4e-64 248.1 165 75.2
FvH4_4g31510 Fragaria vesca HOM05D004366 ORTHO05D005058 8.4e-64 247.7 167 76.6
FAN12G0862 Fragaria x ananassa HOM05D004366 ORTHO05D005058 8.4e-64 247.7 167 76.6
arahy.Tifrunner.gnm1.ann1.QXP3RB Arachis hypogaea HOM05D004366 ORTHO05D005058 1.1e-63 247.3 168 75.6
Haze_12025 Corylus avellana HOM05D004366 ORTHO05D005058 1.1e-63 247.3 164 78.7
Gorai.013G084600 Gossypium raimondii HOM05D004366 ORTHO05D005058 1.1e-63 247.3 165 75.2
MELO3C012087.2 Cucumis melo HOM05D004366 ORTHO05D005058 1.4e-63 246.9 167 76.6
MD13G1073400 Malus domestica HOM05D004366 ORTHO05D005058 1.9e-63 246.5 167 75.4
RcHm_v2.0_Chr4g0440001 Rosa chinensis HOM05D004366 ORTHO05D005058 1.9e-63 246.5 188 69.1
CSS0022805 Camellia sinensis var. sinensis HOM05D004366 ORTHO05D005058 2.4e-63 246.1 168 78.0
CsaV3_5G032600 Cucumis sativus L. HOM05D004366 ORTHO05D005058 2.4e-63 246.1 167 76.6
Sopen01g006640 Solanum pennellii HOM05D004366 ORTHO05D005058 2.4e-63 246.1 168 74.4
Solyc01g010810.4 Solanum lycopersicum HOM05D004366 ORTHO05D005058 4.1e-63 245.4 168 74.4
AUR62034912 Chenopodium quinoa HOM05D004366 ORTHO05D005058 5.4e-63 245.0 167 76.0
Gohir.A13G073900 Gossypium hirsutum HOM05D004366 ORTHO05D005058 5.4e-63 245.0 165 73.3
ClCG05G024360 Citrullus lanatus HOM05D004366 ORTHO05D005058 7.1e-63 244.6 166 76.5
SGA_v2.0_scaffold20G09275 Striga asiatica HOM05D004366 ORTHO05D005058 7.1e-63 244.6 168 75.6
PGSC0003DMG400006558 Solanum tuberosum HOM05D004366 ORTHO05D005058 9.2e-63 244.2 189 67.7
Aqoxy3G03355 Aquilegia oxysepala HOM05D004366 ORTHO05D005058 1.6e-62 243.4 166 75.3
MD16G1074700 Malus domestica HOM05D004366 ORTHO05D005058 2.7e-62 242.7 167 75.4
Nn4g23131 Nelumbo nucifera HOM05D004366 ORTHO05D005058 2.7e-62 242.7 167 76.6
Migut.L01306 Erythranthe guttata HOM05D004366 ORTHO05D005058 4.6e-62 241.9 168 73.8
COL.COLO4_22987 Corchorus olitorius HOM05D004366 ORTHO05D005058 6.0e-62 241.5 165 74.5
Oeu028302.2 Olea europaea HOM05D004366 ORTHO05D005058 7.8e-62 241.1 194 68.6
FAN17G2550 Fragaria x ananassa HOM05D004366 ORTHO05D005058 1.0e-61 240.7 167 74.9
Medtr5g039690 Medicago truncatula HOM05D004366 ORTHO05D005058 1.7e-61 240.0 168 74.4
Glyma.02G106000 Glycine max HOM05D004366 ORTHO05D005058 3.0e-61 239.2 165 74.5
AUR62026617 Chenopodium quinoa HOM05D004366 ORTHO05D005058 3.9e-61 238.8 167 76.0
Cc11_g13140 Coffea canephora HOM05D004366 ORTHO05D005058 3.9e-61 238.8 189 67.2
THA.LOC104822115 Tarenaya hassleriana HOM05D004366 ORTHO05D005058 5.1e-61 238.4 189 66.7
MBI02_g23682_MAGBIO Magnolia biondii HOM05D004366 ORTHO05D005058 8.6e-61 237.7 167 73.7
Ca_04775_v3 Cicer arietinum L. HOM05D004366 ORTHO05D005058 1.1e-60 237.3 165 75.2
FAN15G0746 Fragaria x ananassa HOM05D004366 ORTHO05D005058 1.1e-60 237.3 167 74.3
Sabra13G0046200 Salix brachista HOM05D004366 ORTHO05D005058 1.1e-60 237.3 187 66.3
FAN27G2895 Fragaria x ananassa HOM05D004366 ORTHO05D005058 1.5e-60 236.9 168 73.8
Thhalv10019150m.g Eutrema salsugineum HOM05D004366 ORTHO05D005058 1.9e-60 236.5 168 72.0
Lj2g0005379 Lotus japonicus HOM05D004366 ORTHO05D005058 1.9e-60 236.5 187 68.4
Glyma.01G045700 Glycine max HOM05D004366 ORTHO05D005058 2.5e-60 236.1 165 73.9
TWI53G1314 Tripterygium wilfordii HOM05D004366 ORTHO05D005058 2.5e-60 236.1 168 74.4
CAN.G473.145 Capsicum annuum HOM05D004366 ORTHO05D005058 3.3e-60 235.7 201 63.7
FAN24G0452 Fragaria x ananassa HOM05D004366 ORTHO05D005058 3.3e-60 235.7 167 72.5
arahy.Tifrunner.gnm1.ann1.5V6A51 Arachis hypogaea HOM05D004366 ORTHO05D005058 4.3e-60 235.3 177 71.8
Medtr8g463620 Medicago truncatula HOM05D004366 ORTHO05D005058 4.3e-60 235.3 168 72.6
A07p31430 Brassica napus HOM05D004366 ORTHO05D005058 9.6e-60 234.2 168 70.8
BraA07t30778Z Brassica rapa HOM05D004366 ORTHO05D005058 9.6e-60 234.2 168 70.8
Phvul.002G086500 Phaseolus vulgaris HOM05D004366 ORTHO05D005058 9.6e-60 234.2 165 73.9
CANSAT25G1390 Cannabis sativa HOM05D004366 ORTHO05D005058 1.6e-59 233.4 165 72.1
Psat0s2341g0040 Pisum sativum HOM05D004366 ORTHO05D005058 2.1e-59 233.0 165 74.5
AT1G69680 Arabidopsis thaliana HOM05D004366 ORTHO05D005058 2.8e-59 232.6 168 68.5
BcaB03g14744 Brassica carinata HOM05D004366 ORTHO05D005058 2.8e-59 232.6 189 64.0
Carub.0002s1634 Capsella rubella HOM05D004366 ORTHO05D005058 2.8e-59 232.6 168 70.2
FvH4_2g13310 Fragaria vesca HOM05D004366 ORTHO05D005058 2.8e-59 232.6 167 71.9
PSO339G1196 Papaver somniferum HOM05D004366 ORTHO05D005058 2.8e-59 232.6 167 70.1
CARHR062670 Cardamine hirsuta HOM05D004366 ORTHO05D005058 3.6e-59 232.3 168 69.0
Aa31LG4G11100 Aethionema arabicum HOM05D004366 ORTHO05D005058 4.7e-59 231.9 165 70.3
C06p36720 Brassica napus HOM05D004366 ORTHO05D005058 4.7e-59 231.9 168 70.2
CANSAT54G1616 Cannabis sativa HOM05D004366 ORTHO05D005058 6.2e-59 231.5 165 70.9
BolC6t38782H Brassica oleracea HOM05D004366 ORTHO05D005058 8.1e-59 231.1 168 69.6
Lalb_Chr04g0256161 Lupinus albus HOM05D004366 ORTHO05D005058 8.1e-59 231.1 186 67.7
BcaC08g46415 Brassica carinata HOM05D004366 ORTHO05D005058 1.1e-58 230.7 168 68.5
A07p36060 Brassica napus HOM05D004366 ORTHO05D005058 1.1e-58 230.7 168 68.5
BolC6t39421H Brassica oleracea HOM05D004366 ORTHO05D005058 1.1e-58 230.7 168 68.5
BraA07t31186Z Brassica rapa HOM05D004366 ORTHO05D005058 1.1e-58 230.7 168 68.5
PSO384G0235 Papaver somniferum HOM05D004366 ORTHO05D005058 1.1e-58 230.7 167 70.1
Sp5g24810 Schrenkiella parvula HOM05D004366 ORTHO05D005058 1.1e-58 230.7 168 69.6
AL2G28850 Arabidopsis lyrata HOM05D004366 ORTHO05D005058 1.8e-58 229.9 168 69.0
C06p43460 Brassica napus HOM05D004366 ORTHO05D005058 4.0e-58 228.8 168 67.9
Lsat_1_v5_gn_8_52741 Lactuca sativa HOM05D004366 ORTHO05D005058 8.9e-58 227.6 167 70.7
HanXRQChr08g0210471 Helianthus annuus HOM05D004366 ORTHO05D005058 1.5e-57 226.9 168 69.0
Aa31sc15G10 Aethionema arabicum HOM05D004366 ORTHO05D005058 2.6e-57 226.1 168 68.5
ATR0564G205 Amborella trichopoda HOM05D004366 ORTHO05D005058 9.9e-57 224.2 186 64.5
PGR102G1003 Punica granatum HOM05D004366 ORTHO05D005058 2.2e-56 223.0 165 69.7
PSO675G4203 Papaver somniferum HOM05D004366 ORTHO05D005058 3.8e-56 222.2 167 69.5
Hma1.2p1_0598F.1_g186660 Hydrangea macrophylla HOM05D004366 ORTHO05D005058 4.9e-56 221.9 258 53.1
unitig_22.g6909 Utricularia gibba HOM05D004366 ORTHO05D005058 6.4e-56 221.5 168 70.2
Sp3g28750 Schrenkiella parvula HOM05D004366 ORTHO05D005058 8.4e-56 221.1 171 66.1
HanXRQChr12g0362541 Helianthus annuus HOM05D004366 ORTHO05D005058 1.4e-55 220.3 168 67.3
BcaB03g15490 Brassica carinata HOM05D004366 ORTHO05D005058 5.4e-55 218.4 168 67.3
ECA233G4070 Erigeron canadensis HOM05D004366 ORTHO05D005058 3.5e-54 215.7 189 60.3
Os04g0459600 Oryza sativa ssp. japonica HOM05D004366 ORTHO05D005058 3.9e-53 212.2 189 58.7
TPR.G39101 Trifolium pratense HOM05D004366 ORTHO05D005058 6.6e-53 211.5 175 66.3
Oeu013622.3 Olea europaea HOM05D004366 ORTHO05D005058 2.5e-52 209.5 178 64.6
Ah.03g135200 Amaranthus hybridus HOM05D004366 ORTHO05D005058 5.6e-52 208.4 163 67.5
Potri.013G049900 Populus trichocarpa HOM05D004366 ORTHO05D005058 1.6e-51 206.8 184 63.0
BcaC08g45875 Brassica carinata HOM05D004366 ORTHO05D005058 8.1e-51 204.5 168 64.3
Zm00001eb080830 Zea mays HOM05D004366 ORTHO05D005058 8.1e-51 204.5 165 63.6
FAN22G2022 Fragaria x ananassa HOM05D004366 ORTHO05D005058 2.4e-50 203.0 198 59.6
AL7G43580 Arabidopsis lyrata HOM05D004366 ORTHO05D005058 1.2e-49 200.7 147 70.1
VMungo1215G0984 Vigna mungo HOM05D004366 ORTHO05D005058 1.5e-49 200.3 146 72.6
Duzib248G1524 Durio zibethinus HOM05D004366 ORTHO05D005058 7.6e-49 198.0 207 54.6
SEGI_03925 Sequoiadendron giganteum HOM05D004366 ORTHO05D005058 2.9e-48 196.1 167 58.1
SGA_v2.0_scaffold53G19387 Striga asiatica HOM05D004366 ORTHO05D005058 5.4e-47 191.8 207 56.0
HPP92_006020 Vanilla planifolia HOM05D004366 ORTHO05D005058 1.2e-46 190.7 173 59.0
DCAR_027406 Daucus carota HOM05D002775 ORTHO05D005058 1.5e-44 183.7 118 78.8
vmacro01244 Vaccinium macrocarpon HOM05D004366 ORTHO05D005058 1.5e-44 183.7 220 50.5
Aa31LG9G5650 Aethionema arabicum HOM05D004366 ORTHO05D005058 1.3e-43 180.6 209 50.7
vmacro01242 Vaccinium macrocarpon HOM05D004366 ORTHO05D005058 6.2e-43 178.3 218 49.5
arahy.Tifrunner.gnm1.ann1.4LW61L Arachis hypogaea HOM05D004366 ORTHO05D005058 2.4e-42 176.4 118 76.3
Pp3c9_14930 Physcomitrium patens HOM05D004366 ORTHO05D005058 2.9e-40 169.5 168 51.2
AagrBONN_evm.TU.Sc2ySwM_344.5131 Anthoceros agrestis HOM05D004366 ORTHO05D005058 4.2e-39 165.6 165 53.3
SalBow2G3183 Salvia bowleyana HOM05D004366 ORTHO05D005058 9.3e-39 164.5 115 75.7
Cfa008996 Carpinus fangiana HOM05D004366 ORTHO05D005058 3.9e-37 159.1 208 47.1
AagrBONN_evm.TU.Sc2ySwM_362.1786 Anthoceros agrestis HOM05D004366 ORTHO05D005058 3.1e-34 149.4 169 49.1
SMO147G0050 Selaginella moellendorffii HOM05D004366 ORTHO05D005058 8.4e-32 141.4 164 45.7
CBR_g17957 Chara braunii HOM05D004366 ORTHO05D005058 7.4e-28 128.3 168 42.9
Dinv16634 Davidia involucrata HOM05D004366 ORTHO05D005058 2.1e-27 126.7 79 82.3
Lj6A789T49 Lonicera japonica HOM05D004366 ORTHO05D005058 1.8e-26 123.6 87 72.4
TAR629G2773 Trochodendron aralioides HOM05D004366 ORTHO05D005058 3.1e-26 122.9 100 65.0
arahy.Tifrunner.gnm1.ann1.D4KK35 Arachis hypogaea HOM05D004366 ORTHO05D005058 3.4e-25 119.4 125 56.0
Pp3c15_14240 Physcomitrium patens HOM05D004366 ORTHO05D005058 3.8e-24 115.9 121 51.2
Rhsim11G0057700 Rhododendron simsii HOM05D004366 ORTHO05D005058 5.5e-23 112.1 73 76.7
PGSC0003DMG400015729 Solanum tuberosum HOM05D004366 ORTHO05D005058 1.8e-21 107.1 99 59.6
FAN07G2952 Fragaria x ananassa HOM05D004366 ORTHO05D005058 2.3e-21 106.7 73 68.5
MD11G1061500 Malus domestica HOM05D004366 ORTHO05D005058 8.7e-21 104.8 79 69.6
arahy.Tifrunner.gnm1.ann1.N9R1JE Arachis hypogaea HOM05D004366 ORTHO05D005058 1.9e-20 103.6 69 75.4
arahy.Tifrunner.gnm1.ann1.8CQ436 Arachis hypogaea HOM05D004366 ORTHO05D005058 2.5e-20 103.2 68 76.5
CAN.G154.11 Capsicum annuum HOM05D004366 ORTHO05D005058 2.2e-19 100.1 130 45.4
Mapoly0113s0045 Marchantia polymorpha HOM05D004366 ORTHO05D005058 6.9e-18 95.1 179 33.0
Potri.019G023800 Populus trichocarpa HOM05D004366 ORTHO05D005058 2.9e-16 89.7 77 58.4
arahy.Tifrunner.gnm1.ann1.MY0RSE Arachis hypogaea HOM05D004366 ORTHO05D005058 3.8e-16 89.4 81 60.5
arahy.Tifrunner.gnm1.ann1.NKT7G2 Arachis hypogaea HOM05D004366 ORTHO05D005058 1.1e-15 87.8 111 47.7
BcaC07g37109 Brassica carinata HOM05D004366 ORTHO05D005058 1.1e-15 87.8 74 60.8
C08p04780 Brassica napus HOM05D004366 ORTHO05D005058 2.5e-15 86.7 70 62.9
MCO13G325 Micromonas commoda HOM05D004366 ORTHO05D005058 1.6e-14 84.0 197 34.0
BolC8t47277H Brassica oleracea HOM05D004366 ORTHO05D005058 4.6e-14 82.4 75 60.0
MSTRG.695 Avicennia marina HOM05D004366 ORTHO05D005058 1.8e-13 80.5 52 75.0
CSS0000370 Camellia sinensis var. sinensis HOM05D004366 ORTHO05D005058 3.0e-13 79.7 48 79.2
CANSAT54G0841 Cannabis sativa HOM05D001400 ORTHO05D001795 7.4e-12 75.1 48 66.7
arahy.Tifrunner.gnm1.ann1.J913Y5 Arachis hypogaea HOM05D004366 ORTHO05D005058 1.3e-11 74.3 51 70.6
CSS0042124 Camellia sinensis var. sinensis HOM05D004366 ORTHO05D005058 1.7e-11 73.9 48 72.9
AUR62028525 Chenopodium quinoa HOM05D004366 ORTHO05D000022 2.4e-10 70.1 44 72.7
Lsat_1_v5_gn_1_103541 Lactuca sativa HOM05D004366 ORTHO05D005058 1.2e-09 67.8 75 48.0
SalBow1G5797 Salvia bowleyana HOM05D004366 ORTHO05D005058 1.1e-07 61.2 39 74.4
PSO339G3282 Papaver somniferum HOM05D000073 ORTHO05D000033 2.5e-07 60.1 53 64.2
Atru.chr9.1643 Acer truncatum HOM05D004366 ORTHO05D005058 6.1e-06 55.5 45 62.2
BraA08t32473Z Brassica rapa HOM05D004366 ORTHO05D005058 6.1e-06 55.5 40 60.0


User provided reference genes

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