Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01019707001 Vitis vinifera HOM05D000087 ORTHO05D005735 0.0e+00 2289.2 1177 100.0
Dinv11465 Davidia involucrata HOM05D000087 ORTHO05D005735 0.0e+00 1511.9 1200 67.3
TAR629G0355 Trochodendron aralioides HOM05D000087 ORTHO05D005735 0.0e+00 1505.3 1214 67.3
RcHm_v2.0_Chr7g0188131 Rosa chinensis HOM05D000087 ORTHO05D005735 0.0e+00 1444.1 1194 64.6
Duzib068G0232 Durio zibethinus HOM05D000087 ORTHO05D005735 0.0e+00 1431.8 1203 64.0
Manes.17G015000 Manihot esculenta HOM05D000087 ORTHO05D005735 0.0e+00 1430.6 1186 64.7
Prupe.5G137300 Prunus persica HOM05D000087 ORTHO05D005735 0.0e+00 1420.6 1204 63.9
Thecc.03G213700 Theobroma cacao HOM05D000087 ORTHO05D005735 0.0e+00 1417.1 1191 63.5
Lj2C147G10 Lonicera japonica HOM05D000087 ORTHO05D005735 0.0e+00 1416.4 1208 64.6
TWI81G0850 Tripterygium wilfordii HOM05D000087 ORTHO05D005735 0.0e+00 1412.1 1196 63.7
MD06G1127500 Malus domestica HOM05D000087 ORTHO05D005735 0.0e+00 1406.3 1211 63.5
Ciclev10018581m.g Citrus clementina HOM05D000087 ORTHO05D005735 0.0e+00 1400.6 1179 64.0
FvH4_5g10170 Fragaria vesca HOM05D000087 ORTHO05D005735 0.0e+00 1398.6 1187 63.2
FAN04G3195 Fragaria x ananassa HOM05D000087 ORTHO05D005735 0.0e+00 1383.6 1189 62.7
QL02p026653 Quercus lobata HOM05D000087 ORTHO05D005735 0.0e+00 1383.6 1140 65.4
FAN08G3226 Fragaria x ananassa HOM05D000087 ORTHO05D005735 0.0e+00 1381.3 1189 62.5
Actinidia22240 Actinidia chinensis HOM05D000087 ORTHO05D005735 0.0e+00 1377.1 1209 63.0
Gorai.004G127300 Gossypium raimondii HOM05D000087 ORTHO05D005735 0.0e+00 1371.3 1204 62.0
Gohir.A08G107500 Gossypium hirsutum HOM05D000087 ORTHO05D005735 0.0e+00 1362.1 1207 61.5
FAN18G4270 Fragaria x ananassa HOM05D000087 ORTHO05D005735 0.0e+00 1347.0 1187 61.5
Cfa011874 Carpinus fangiana HOM05D000087 ORTHO05D005735 0.0e+00 1346.3 1141 64.1
Gohir.D08G120500 Gossypium hirsutum HOM05D000087 ORTHO05D005735 0.0e+00 1342.8 1182 61.7
Sabra16G0307100 Salix brachista HOM05D000087 ORTHO05D005735 0.0e+00 1335.5 1174 62.4
PSO063G0654 Papaver somniferum HOM05D000087 ORTHO05D005735 0.0e+00 1315.4 1218 59.3
Eucgr.D02539 Eucalyptus grandis HOM05D000087 ORTHO05D005735 0.0e+00 1306.6 1188 60.1
Nn3g18737 Nelumbo nucifera HOM05D000087 ORTHO05D005735 0.0e+00 1293.9 1217 58.9
PSO782G2195 Papaver somniferum HOM05D000087 ORTHO05D005735 0.0e+00 1283.1 1218 58.4
Haze_09232 Corylus avellana HOM05D000087 ORTHO05D005735 0.0e+00 1273.8 1149 61.6
CANSAT64G2851 Cannabis sativa HOM05D000087 ORTHO05D005735 0.0e+00 1260.7 1184 58.9
CsaV3_5G001350 Cucumis sativus L. HOM05D000087 ORTHO05D005735 0.0e+00 1245.7 1204 57.5
Rhsim02G0255700 Rhododendron simsii HOM05D000087 ORTHO05D005735 0.0e+00 1238.8 1232 57.3
EL10Ac2g03880 Beta vulgaris HOM05D000087 ORTHO05D005735 0.0e+00 1235.3 1190 56.6
AUR62039113 Chenopodium quinoa HOM05D000087 ORTHO05D005735 0.0e+00 1233.0 1185 57.5
HanXRQChr01g0016041 Helianthus annuus HOM05D000087 ORTHO05D005735 0.0e+00 1227.6 1198 57.9
Psat5g111000 Pisum sativum HOM05D000087 ORTHO05D005735 0.0e+00 1214.5 1177 55.6
Sed0004639 Sechium edule HOM05D000087 ORTHO05D005735 0.0e+00 1214.5 1203 56.4
AUR62009145 Chenopodium quinoa HOM05D000087 ORTHO05D005735 0.0e+00 1210.7 1192 56.5
Lj6g0001276 Lotus japonicus HOM05D000087 ORTHO05D005735 0.0e+00 1201.4 1195 55.4
ECA246G1365 Erigeron canadensis HOM05D000087 ORTHO05D005735 0.0e+00 1195.3 1168 57.1
PGR031G2531 Punica granatum HOM05D000087 ORTHO05D005735 0.0e+00 1185.6 1178 56.3
ClCG01G001230 Citrullus lanatus HOM05D000087 ORTHO05D005735 0.0e+00 1182.9 1334 51.9
Lalb_Chr14g0362591 Lupinus albus HOM05D000087 ORTHO05D005735 0.0e+00 1170.6 1184 54.9
MSTRG.22476 Avicennia marina HOM05D000087 ORTHO05D005735 0.0e+00 1161.0 1181 53.9
THA.LOC104806594 Tarenaya hassleriana HOM05D000087 ORTHO05D005735 0.0e+00 1149.8 1146 55.7
Migut.H02249 Erythranthe guttata HOM05D000087 ORTHO05D005735 0.0e+00 1146.0 1192 52.9
MELO3C005812.2 Cucumis melo HOM05D000087 ORTHO05D005735 0.0e+00 1137.5 1337 50.6
SGA_v2.0_scaffold123G33449 Striga asiatica HOM05D000087 ORTHO05D005735 0.0e+00 1135.2 1325 50.2
Sc01g0010950 Simmondsia chinensis HOM05D000087 ORTHO05D005735 0.0e+00 1132.9 1140 56.1
Lsat_1_v5_gn_3_13301 Lactuca sativa HOM05D000087 ORTHO05D005735 0.0e+00 1129.8 1161 54.3
Hund03336 Selenicereus undatus HOM05D000087 ORTHO05D005735 0.0e+00 1128.2 1195 53.2
Carub.0007s0001 Capsella rubella HOM05D000087 ORTHO05D005735 0.0e+00 1123.2 1177 53.2
C01p21480 Brassica napus HOM05D000087 ORTHO05D005735 0.0e+00 1120.1 1180 52.9
BolC1t02068H Brassica oleracea HOM05D000087 ORTHO05D005735 0.0e+00 1120.1 1180 52.9
Sp7g37630 Schrenkiella parvula HOM05D000087 ORTHO05D005735 0.0e+00 1118.6 1184 53.4
AT4G38120 Arabidopsis thaliana HOM05D000087 ORTHO05D005735 0.0e+00 1118.2 1183 53.3
AL7G10010 Arabidopsis lyrata HOM05D000087 ORTHO05D005735 0.0e+00 1113.6 1185 53.2
Cc08_g17160 Coffea canephora HOM05D000087 ORTHO05D005735 0.0e+00 1109.7 1210 53.1
Medtr3g080640 Medicago truncatula HOM05D000087 ORTHO05D005735 0.0e+00 1106.3 1086 55.0
MBI04_g04806_MAGBIO Magnolia biondii HOM05D000087 ORTHO05D005735 0.0e+00 1102.0 1136 55.6
A01p17150 Brassica napus HOM05D000087 ORTHO05D005735 0.0e+00 1097.4 1173 53.2
BraA01t01671Z Brassica rapa HOM05D000087 ORTHO05D005735 0.0e+00 1089.7 1176 52.6
Solyc07g008450.3 Solanum lycopersicum HOM05D000087 ORTHO05D005735 0.0e+00 1089.3 1088 54.9
Sopen07g004380 Solanum pennellii HOM05D000087 ORTHO05D005735 0.0e+00 1086.6 1089 54.5
CiPaw.11G106200 Carya illinoinensis HOM05D000087 ORTHO05D005735 0.0e+00 1079.7 866 67.7
CAN.G1548.2 Capsicum annuum HOM05D000087 ORTHO05D005735 4.0e-311 1071.6 1088 54.1
ATR0579G142 Amborella trichopoda HOM05D000087 ORTHO05D005735 1.2e-310 1070.1 1217 49.5
Phvul.011G167550 Phaseolus vulgaris HOM05D000087 ORTHO05D005735 1.3e-307 1060.1 1017 56.2
Peaxi162Scf00046g00228 Petunia axillaris HOM05D000087 ORTHO05D005735 3.5e-305 1052.0 1086 53.8
Nitab4.5_0007502g0010 Nicotiana tabacum HOM05D000087 ORTHO05D005735 6.3e-299 1031.2 1092 53.1
Nitab4.5_0000491g0190 Nicotiana tabacum HOM05D000087 ORTHO05D005735 5.5e-287 991.5 1095 52.1
arahy.Tifrunner.gnm1.ann1.0XGN9Z Arachis hypogaea HOM05D000087 ORTHO05D005735 7.5e-284 981.1 1210 49.0
Aa31LG6G16960 Aethionema arabicum HOM05D000087 ORTHO05D005735 6.3e-283 978.0 1143 50.5
Thhalv10024269m.g Eutrema salsugineum HOM05D000087 ORTHO05D005735 4.7e-278 961.8 1177 48.3
Potri.001G454200 Populus trichocarpa HOM05D000087 ORTHO05D005735 6.1e-278 961.4 850 61.9
Zm00001eb416210 Zea mays HOM05D000087 ORTHO05D005735 4.7e-270 935.3 1202 46.3
vmacro08519 Vaccinium macrocarpon HOM05D000087 ORTHO05D005735 2.5e-263 912.9 897 59.0
FAN18G0494 Fragaria x ananassa HOM05D000087 ORTHO05D005735 1.1e-250 870.9 983 51.7
Aqoxy5G04397 Aquilegia oxysepala HOM05D000087 ORTHO05D005735 2.1e-249 866.7 876 55.7
arahy.Tifrunner.gnm1.ann1.DH86LW Arachis hypogaea HOM05D000087 ORTHO05D005735 1.3e-243 847.4 1236 43.9
DCAR_010123 Daucus carota HOM05D000087 ORTHO05D005735 6.9e-229 798.5 848 53.5
CDE02G0276 Ceratophyllum demersum HOM05D000087 ORTHO05D005735 3.1e-221 773.1 942 49.0
Hma1.2p1_0198F.1_g085370 Hydrangea macrophylla HOM05D000087 ORTHO05D005735 1.1e-210 738.0 592 65.7
Glyma.06G180700 Glycine max HOM05D000087 ORTHO05D005735 4.1e-205 719.5 653 59.0
Mapoly0043s0141 Marchantia polymorpha HOM05D000087 ORTHO05D005735 2.0e-196 690.6 1021 41.1
Atru.chr9.2610 Acer truncatum HOM05D000087 ORTHO05D005735 1.6e-188 664.5 494 71.1
Pp3c3_37190 Physcomitrium patens HOM05D000087 ORTHO05D005735 3.0e-184 650.2 1131 37.0
SMO367G1062 Selaginella moellendorffii HOM05D000087 ORTHO05D005735 2.6e-183 647.1 1168 38.3
MD14G1143100 Malus domestica HOM05D000087 ORTHO05D005735 1.7e-174 617.8 575 60.3
HPP92_028198 Vanilla planifolia HOM05D000087 ORTHO05D005735 3.1e-173 613.6 758 46.7
VMungo1127G0184 Vigna mungo HOM05D000087 ORTHO05D005735 3.6e-169 600.1 556 58.3
Cpa.g.sc37.117 Carica papaya HOM05D000087 ORTHO05D005735 2.0e-167 594.3 613 56.3
HPP92_008913 Vanilla planifolia HOM05D000087 ORTHO05D005735 9.5e-162 575.5 674 48.5
COL.COLO4_10863 Corchorus olitorius HOM05D000087 ORTHO05D005735 9.2e-157 558.9 1157 36.0
Ca_16291_v3 Cicer arietinum L. HOM05D000087 ORTHO05D005735 2.4e-149 534.3 586 51.0
CARHR143600 Cardamine hirsuta HOM05D000087 ORTHO05D005735 1.7e-147 528.1 490 58.2
Oeu019648.1 Olea europaea HOM05D000087 ORTHO05D005735 3.9e-139 500.4 502 56.8
Glyma.06G181000 Glycine max HOM05D000087 ORTHO05D005735 8.9e-136 489.2 544 49.8
Os08g0152900 Oryza sativa ssp. japonica HOM05D000087 ORTHO05D005735 2.9e-134 484.2 571 47.5
vmacro08520 Vaccinium macrocarpon HOM05D000087 ORTHO05D005735 1.9e-106 391.7 416 52.9
CBR_g3175 Chara braunii HOM05D000087 ORTHO05D005735 2.9e-102 377.9 844 34.0
Duzib084G1107 Durio zibethinus HOM05D000087 ORTHO05D005735 7.9e-100 369.8 451 48.8
SEGI_15816 Sequoiadendron giganteum HOM05D000087 ORTHO05D005735 2.2e-89 335.1 349 54.2
MD14G1142900 Malus domestica HOM05D000087 ORTHO05D005735 5.0e-86 323.9 258 69.4
MCO07G377 Micromonas commoda HOM05D000087 ORTHO05D005735 9.7e-74 283.1 1155 26.1
CSS0029196 Camellia sinensis var. sinensis HOM05D000087 ORTHO05D005735 2.1e-68 265.4 175 79.4
SalBow4G1355 Salvia bowleyana HOM05D000087 ORTHO05D005735 2.0e-66 258.8 348 41.7
AL8G10020 Arabidopsis lyrata HOM05D000087 ORTHO05D005735 7.7e-63 246.9 253 53.0
CiPaw.11G106300 Carya illinoinensis HOM05D000087 ORTHO05D005735 8.0e-60 236.9 253 50.2
Cpa.g.sc363.3 Carica papaya HOM05D000087 ORTHO05D005735 9.8e-58 229.9 169 71.0
Duzib084G0823 Durio zibethinus HOM05D000087 ORTHO05D005735 9.8e-58 229.9 168 70.8
SEGI_26992 Sequoiadendron giganteum HOM05D000087 ORTHO05D005735 1.3e-57 229.6 220 53.2
MD14G1142800 Malus domestica HOM05D000087 ORTHO05D005735 2.4e-56 225.3 244 50.0
AUR62009162 Chenopodium quinoa HOM05D000087 ORTHO05D005735 7.7e-55 220.3 577 34.1
CSS0034403 Camellia sinensis var. sinensis HOM05D000087 ORTHO05D005735 6.8e-51 207.2 231 52.4
CSS0007327 Camellia sinensis var. sinensis HOM05D000087 ORTHO05D005735 2.9e-49 201.8 241 49.0
FAN13G3301 Fragaria x ananassa HOM05D000087 ORTHO05D005735 6.2e-44 184.1 134 68.7
HPP92_028197 Vanilla planifolia HOM05D000087 ORTHO05D005735 8.6e-38 163.7 170 54.7
CARHR293880 Cardamine hirsuta HOM05D000087 ORTHO05D005735 2.1e-36 159.1 123 65.0
Cre03.g166600 Chlamydomonas reinhardtii HOM05D000087 ORTHO05D005735 7.5e-34 150.6 1144 21.6
SEGI_26806 Sequoiadendron giganteum HOM05D000087 ORTHO05D005735 8.6e-30 137.1 334 30.2
CARHR293870 Cardamine hirsuta HOM05D000087 ORTHO05D005735 4.7e-28 131.3 130 54.6
Oeu053260.1 Olea europaea HOM05D000087 ORTHO05D010194 4.4e-26 124.8 114 61.4
CSS0025060 Camellia sinensis var. sinensis HOM05D000087 ORTHO05D005735 1.7e-25 122.9 121 56.2
CSS0050207 Camellia sinensis var. sinensis HOM05D000087 ORTHO05D005735 4.1e-24 118.2 92 68.5
MBI04_g04804_MAGBIO Magnolia biondii HOM05D000087 ORTHO05D005735 7.1e-24 117.5 99 60.6
Hma1.2p1_0198F.1_g085360 Hydrangea macrophylla HOM05D000087 ORTHO05D005735 9.2e-24 117.1 92 65.2
VMungo1127G1440 Vigna mungo HOM05D000087 ORTHO05D005735 6.0e-23 114.4 145 42.1
Rhsim02G0255800 Rhododendron simsii HOM05D000087 ORTHO05D005735 7.8e-23 114.0 102 60.8
RcHm_v2.0_Chr7g0188121 Rosa chinensis HOM05D000087 ORTHO05D005735 1.0e-22 113.6 71 84.5
CARHR291390 Cardamine hirsuta HOM05D000087 ORTHO05D005735 5.1e-22 111.3 64 81.2
MBI17_g33112_MAGBIO Magnolia biondii HOM05D000087 ORTHO05D005735 3.6e-20 105.1 68 69.1
Duzib084G0615 Durio zibethinus HOM05D000087 ORTHO05D005735 6.2e-20 104.4 94 61.7
MBI04_g07085_MAGBIO Magnolia biondii HOM05D000087 ORTHO05D005735 2.0e-18 99.4 93 52.7
Medtr3g080660 Medicago truncatula HOM05D000087 ORTHO05D005735 3.4e-18 98.6 102 53.9
MBI04_g39794_MAGBIO Magnolia biondii HOM05D000087 ORTHO05D005735 5.8e-18 97.8 93 52.7
VMungo1080G1218 Vigna mungo HOM05D000087 ORTHO05D005735 2.9e-17 95.5 97 49.5
SEGI_26704 Sequoiadendron giganteum HOM05D000087 ORTHO05D005735 3.8e-17 95.1 180 34.4
VMungo0145G0001 Vigna mungo HOM05D000087 ORTHO05D005735 3.8e-17 95.1 97 49.5
CSS0033050 Camellia sinensis var. sinensis HOM05D000087 ORTHO05D005735 2.3e-14 85.9 75 58.7
CARHR046160 Cardamine hirsuta HOM05D000087 ORTHO05D005735 5.1e-14 84.7 61 68.9
MBI04_g04802_MAGBIO Magnolia biondii HOM05D000087 ORTHO05D005735 5.6e-13 81.3 64 70.3
RcHm_v2.0_Chr7g0188101 Rosa chinensis HOM05D000087 ORTHO05D005735 5.6e-13 81.3 95 44.2
Ah.10g034360 Amaranthus hybridus HOM05D000087 ORTHO05D005735 1.8e-11 76.3 84 47.6
CSS0034676 Camellia sinensis var. sinensis HOM05D000087 ORTHO05D005735 5.3e-11 74.7 91 48.4
CARHR293850 Cardamine hirsuta HOM05D000087 ORTHO05D005735 9.0e-11 73.9 83 48.2
SalBow1G5284 Salvia bowleyana HOM05D000087 ORTHO05D005735 2.6e-10 72.4 73 56.2
CSS0049190 Camellia sinensis var. sinensis HOM05D000087 ORTHO05D005735 1.9e-08 66.2 69 55.1
CARHR291380 Cardamine hirsuta HOM05D000087 ORTHO05D005735 4.2e-08 65.1 64 53.1
MBI04_g04803_MAGBIO Magnolia biondii HOM05D000087 ORTHO05D005735 6.0e-07 61.2 106 40.6
Nitab4.5_0000949g0050 Nicotiana tabacum HOM05D005235 ORTHO05D006938 5.1e-06 58.2 86 43.0
EL10Ac2g04007 Beta vulgaris HOM05D000087 ORTHO05D088565 6.7e-06 57.8 91 39.6


User provided reference genes

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