Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01019681001 Vitis vinifera HOM05D008304 ORTHO05D004056 3.9e-38 161.0 82 100.0
QL02p027330 Quercus lobata HOM05D008304 ORTHO05D004056 1.6e-20 102.4 82 70.7
Cpa.g.sc37.98 Carica papaya HOM05D008304 ORTHO05D004056 1.0e-17 93.2 82 65.9
Haze_09200 Corylus avellana HOM05D008304 ORTHO05D004056 3.8e-17 91.3 84 64.3
Actinidia22217 Actinidia chinensis HOM05D008304 ORTHO05D004056 1.9e-16 89.0 88 65.9
Cfa011898 Carpinus fangiana HOM05D008304 ORTHO05D004056 3.2e-16 88.2 84 63.1
CiPaw.11G110100 Carya illinoinensis HOM05D008304 ORTHO05D004056 4.2e-16 87.8 87 65.5
CSS0003921 Camellia sinensis var. sinensis HOM05D008304 ORTHO05D004056 9.3e-16 86.7 89 61.8
Manes.01G055200 Manihot esculenta HOM05D008304 ORTHO05D004056 2.1e-15 85.5 82 62.2
vmacro11488 Vaccinium macrocarpon HOM05D008304 ORTHO05D004056 4.6e-15 84.3 88 61.4
TAR629G3464 Trochodendron aralioides HOM05D008304 ORTHO05D004056 1.0e-14 83.2 82 64.6
Thecc.03G217700 Theobroma cacao HOM05D008304 ORTHO05D004056 3.0e-14 81.6 82 63.4
Oeu042857.1 Olea europaea HOM05D008304 ORTHO05D004056 5.1e-14 80.9 82 61.0
Dinv18759 Davidia involucrata HOM05D008304 ORTHO05D004056 6.7e-14 80.5 94 57.4
Dinv12896 Davidia involucrata HOM05D008304 ORTHO05D004056 8.7e-14 80.1 86 60.5
ClCG01G001410 Citrullus lanatus HOM05D008304 ORTHO05D004056 1.1e-13 79.7 85 57.6
Sed0018210 Sechium edule HOM05D008304 ORTHO05D004056 1.5e-13 79.3 83 61.4
COL.COLO4_10829 Corchorus olitorius HOM05D008304 ORTHO05D004056 4.3e-13 77.8 82 59.8
MD14G1138600 Malus domestica HOM05D008304 ORTHO05D004056 4.3e-13 77.8 82 64.6
Oeu015753.1 Olea europaea HOM05D008304 ORTHO05D004056 5.7e-13 77.4 82 56.1
Gorai.008G260200 Gossypium raimondii HOM05D008304 ORTHO05D004056 7.4e-13 77.0 82 56.1
Gohir.A12G241800 Gossypium hirsutum HOM05D008304 ORTHO05D004056 9.6e-13 76.6 82 56.1
Gohir.D12G243000 Gossypium hirsutum HOM05D008304 ORTHO05D004056 1.3e-12 76.3 82 56.1
Nitab4.5_0002520g0050 Nicotiana tabacum HOM05D008304 ORTHO05D004056 1.3e-12 76.3 91 54.9
MD06G1122200 Malus domestica HOM05D008304 ORTHO05D004056 1.6e-12 75.9 82 59.8
Sabra16G0303400 Salix brachista HOM05D008304 ORTHO05D004056 8.2e-12 73.6 82 53.7
Prupe.5G132900 Prunus persica HOM05D008304 ORTHO05D004056 1.4e-11 72.8 82 57.3
Duzib205G1739 Durio zibethinus HOM05D008304 ORTHO05D004056 3.1e-11 71.6 82 58.5
Potri.001G449633 Populus trichocarpa HOM05D008304 ORTHO05D004056 5.3e-11 70.9 85 52.9
Gohir.D09G182600 Gossypium hirsutum HOM05D008304 ORTHO05D004056 6.9e-11 70.5 82 53.7
Gorai.006G204900 Gossypium raimondii HOM05D008304 ORTHO05D004056 6.9e-11 70.5 82 53.7
CDE04G3503 Ceratophyllum demersum HOM05D008304 ORTHO05D004056 9.0e-11 70.1 82 57.3
Migut.E00724 Erythranthe guttata HOM05D008304 ORTHO05D004056 9.0e-11 70.1 83 51.8
CANSAT21G0162 Cannabis sativa HOM05D008304 ORTHO05D004056 1.5e-10 69.3 82 53.7
Gohir.A09G187800 Gossypium hirsutum HOM05D008304 ORTHO05D004056 2.6e-10 68.6 82 52.4
Atru.chr9.1863 Acer truncatum HOM05D008304 ORTHO05D004056 4.5e-10 67.8 83 57.8
FvH4_5g10570 Fragaria vesca HOM05D008304 ORTHO05D004056 1.0e-09 66.6 82 53.7
FAN04G0709 Fragaria x ananassa HOM05D008304 ORTHO05D012179 1.0e-09 66.6 82 53.7
FAN13G2184 Fragaria x ananassa HOM05D008304 ORTHO05D012179 1.0e-09 66.6 82 53.7
FAN18G4101 Fragaria x ananassa HOM05D008304 ORTHO05D012179 1.0e-09 66.6 82 53.7
Peaxi162Scf00074g00131 Petunia axillaris HOM05D008304 ORTHO05D004056 1.0e-09 66.6 86 52.3
Cc08_g16980 Coffea canephora HOM05D008304 ORTHO05D004056 1.3e-09 66.2 89 53.9
Eucgr.D01660 Eucalyptus grandis HOM05D008304 ORTHO05D004056 1.7e-09 65.9 77 49.4
Sabra11G0136700 Salix brachista HOM05D008304 ORTHO05D004056 2.2e-09 65.5 82 51.2
Sabra11G0148600 Salix brachista HOM05D008304 ORTHO05D004056 2.2e-09 65.5 82 51.2
Ciclev10023139m.g Citrus clementina HOM05D008304 ORTHO05D004056 2.9e-09 65.1 83 56.6
PGR042G2542 Punica granatum HOM05D008304 ORTHO05D004056 6.5e-09 63.9 86 47.7
Potri.011G151900 Populus trichocarpa HOM05D008304 ORTHO05D004056 8.4e-09 63.5 82 51.2
MBI04_g22063_MAGBIO Magnolia biondii HOM05D008304 ORTHO05D004056 1.9e-08 62.4 82 57.3
CsaV3_5G001550 Cucumis sativus L. HOM05D008304 ORTHO05D004056 2.5e-08 62.0 81 50.6
MBI06_g06482_MAGBIO Magnolia biondii HOM05D005953 ORTHO05D004056 3.2e-08 61.6 82 50.0
Nn1g06570 Nelumbo nucifera HOM05D005953 ORTHO05D004056 4.2e-08 61.2 82 46.3
MBI12_g20132_MAGBIO Magnolia biondii HOM05D008304 ORTHO05D004056 7.1e-08 60.5 82 48.8
MBI07_g12792_MAGBIO Magnolia biondii HOM05D005953 ORTHO05D004056 9.3e-08 60.1 82 46.3
Thecc.02G179300 Theobroma cacao HOM05D005953 ORTHO05D004056 1.6e-07 59.3 82 50.0
Gohir.D04G143500 Gossypium hirsutum HOM05D005953 ORTHO05D004056 2.1e-07 58.9 75 52.0
Gorai.012G128900 Gossypium raimondii HOM05D005953 ORTHO05D004056 2.1e-07 58.9 75 52.0
Atru.chr6.2998 Acer truncatum HOM05D005953 ORTHO05D004056 3.5e-07 58.2 83 50.6
Nn1g00437 Nelumbo nucifera HOM05D008304 ORTHO05D004056 3.5e-07 58.2 82 50.0
Sabra13G0111400 Salix brachista HOM05D005953 ORTHO05D004056 3.5e-07 58.2 79 54.4
GSVIVG01020541001 Vitis vinifera HOM05D005953 ORTHO05D004056 3.5e-07 58.2 86 46.5
Manes.12G089522 Manihot esculenta HOM05D005953 ORTHO05D004056 4.6e-07 57.8 71 47.9
SalBow1G2785 Salvia bowleyana HOM05D005953 ORTHO05D004056 6.1e-07 57.4 84 50.0
Aqoxy1G02469 Aquilegia oxysepala HOM05D005953 ORTHO05D004056 7.9e-07 57.0 85 45.9
Medtr2g090340 Medicago truncatula HOM05D005953 ORTHO05D004056 7.9e-07 57.0 82 50.0
Gohir.A04G103800 Gossypium hirsutum HOM05D005953 ORTHO05D004056 1.0e-06 56.6 75 50.7
Ca_01501_v3 Cicer arietinum L. HOM05D005953 ORTHO05D004056 1.3e-06 56.2 82 48.8
Ciclev10017361m.g Citrus clementina HOM05D005953 ORTHO05D004056 1.3e-06 56.2 85 45.9
CDE08G1618 Ceratophyllum demersum HOM05D005953 ORTHO05D004056 1.8e-06 55.8 84 50.0
Glyma.12G112600 Glycine max HOM05D005953 ORTHO05D004056 1.8e-06 55.8 87 46.0
ECA233G3589 Erigeron canadensis HOM05D000020 ORTHO05D000543 2.3e-06 55.5 77 48.1
Psat2g130600 Pisum sativum HOM05D008304 ORTHO05D004056 2.3e-06 55.5 82 45.1
QL02p049480 Quercus lobata HOM05D005953 ORTHO05D004056 3.0e-06 55.1 81 49.4
QL08p038675 Quercus lobata HOM05D005953 ORTHO05D004056 3.0e-06 55.1 81 49.4
RcHm_v2.0_Chr7g0187581 Rosa chinensis HOM05D008304 ORTHO05D004056 3.0e-06 55.1 44 70.5
Phvul.011G114200 Phaseolus vulgaris HOM05D005953 ORTHO05D004056 3.9e-06 54.7 84 46.4
PGR042G2028 Punica granatum HOM05D005953 ORTHO05D004056 3.9e-06 54.7 87 40.2
Sp7g26250 Schrenkiella parvula HOM05D005953 ORTHO05D004056 3.9e-06 54.7 82 45.1
arahy.Tifrunner.gnm1.ann1.RLZ54R Arachis hypogaea HOM05D005953 ORTHO05D004056 5.1e-06 54.3 84 48.8
HanXRQChr07g0192251 Helianthus annuus HOM05D010428 ORTHO05D012179 5.1e-06 54.3 79 45.6
CAN.G567.106 Capsicum annuum HOM05D008304 ORTHO05D004056 6.7e-06 53.9 76 43.4
Lalb_Chr03g0029431 Lupinus albus HOM05D005953 ORTHO05D004056 6.7e-06 53.9 85 47.1
TAR626G0584 Trochodendron aralioides HOM05D005953 ORTHO05D004056 6.7e-06 53.9 82 46.3
arahy.Tifrunner.gnm1.ann1.XD6XV6 Arachis hypogaea HOM05D005953 ORTHO05D004056 8.7e-06 53.5 84 47.6
Carub.0007s3322 Capsella rubella HOM05D010428 ORTHO05D012179 8.7e-06 53.5 82 47.6
MELO3C013618.2 Cucumis melo HOM05D005953 ORTHO05D004056 8.7e-06 53.5 82 48.8
Glyma.06G293200 Glycine max HOM05D005953 ORTHO05D004056 8.7e-06 53.5 31 80.6
Lalb_Chr14g0366901 Lupinus albus HOM05D005953 ORTHO05D004056 8.7e-06 53.5 82 46.3


User provided reference genes

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