Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01019628001 Vitis vinifera HOM05D002505 ORTHO05D007115 3.0e-232 808.1 410 100.0
Cfa011943 Carpinus fangiana HOM05D002505 ORTHO05D007115 1.7e-179 632.9 411 77.4
Haze_09143 Corylus avellana HOM05D002505 ORTHO05D007115 3.0e-179 632.1 412 77.4
QL02p027659 Quercus lobata HOM05D002505 ORTHO05D007115 6.9e-176 620.9 410 75.6
Prupe.5G127300 Prunus persica HOM05D002505 ORTHO05D007115 7.6e-175 617.5 413 73.8
FAN17G1638 Fragaria x ananassa HOM05D002505 ORTHO05D007115 5.4e-173 611.3 413 73.4
FAN07G1120 Fragaria x ananassa HOM05D002505 ORTHO05D007115 2.7e-172 609.0 413 73.1
Dinv11454 Davidia involucrata HOM05D002505 ORTHO05D007115 1.7e-171 606.3 409 75.1
TAR375G0040 Trochodendron aralioides HOM05D002505 ORTHO05D007115 8.7e-171 604.0 413 73.4
CiPaw.11G114300 Carya illinoinensis HOM05D002505 ORTHO05D007115 3.3e-170 602.1 409 73.8
FAN22G1998 Fragaria x ananassa HOM05D002505 ORTHO05D007115 5.6e-170 601.3 413 72.2
Dinv37391 Davidia involucrata HOM05D002505 ORTHO05D007115 7.3e-170 600.9 380 78.4
FvH4_4g16080 Fragaria vesca HOM05D002505 ORTHO05D007115 1.6e-169 599.7 413 71.9
FAN12G2820 Fragaria x ananassa HOM05D002505 ORTHO05D007115 1.6e-169 599.7 413 71.9
Thecc.03G223700 Theobroma cacao HOM05D002505 ORTHO05D007115 6.2e-169 597.8 410 72.9
TWI60G0007 Tripterygium wilfordii HOM05D002505 ORTHO05D007115 1.8e-168 596.3 418 70.3
CSS0047752 Camellia sinensis var. sinensis HOM05D002505 ORTHO05D007115 6.4e-166 587.8 411 72.5
Lj2A158G82 Lonicera japonica HOM05D002505 ORTHO05D007115 1.4e-165 586.6 439 68.1
CANSAT21G2418 Cannabis sativa HOM05D002505 ORTHO05D007115 1.2e-164 583.6 410 70.2
MD06G1114600 Malus domestica HOM05D002505 ORTHO05D007115 2.1e-164 582.8 415 68.9
TPR.G36929 Trifolium pratense HOM05D002505 ORTHO05D007115 1.3e-163 580.1 413 70.5
Ca_12555_v3 Cicer arietinum L. HOM05D002505 ORTHO05D007115 5.1e-163 578.2 414 70.5
vmacro11517 Vaccinium macrocarpon HOM05D002505 ORTHO05D007115 1.1e-162 577.0 479 62.2
Duzib205G1766 Durio zibethinus HOM05D002505 ORTHO05D007115 2.5e-162 575.9 410 69.5
RcHm_v2.0_Chr7g0186571 Rosa chinensis HOM05D002505 ORTHO05D007115 4.3e-162 575.1 412 68.7
Medtr1g032200 Medicago truncatula HOM05D002505 ORTHO05D007115 3.1e-160 568.9 413 70.5
Manes.02G004600 Manihot esculenta HOM05D002505 ORTHO05D007115 4.0e-160 568.5 410 69.8
Sopen08g031180 Solanum pennellii HOM05D002505 ORTHO05D007115 5.3e-160 568.2 410 69.5
Lalb_Chr17g0338531 Lupinus albus HOM05D002505 ORTHO05D007115 1.5e-159 566.6 413 70.0
Eucgr.D01694 Eucalyptus grandis HOM05D002505 ORTHO05D007115 2.6e-159 565.8 413 68.8
Glyma.06G132900 Glycine max HOM05D002505 ORTHO05D007115 3.4e-159 565.5 408 69.4
Nitab4.5_0002728g0050 Nicotiana tabacum HOM05D002505 ORTHO05D007115 7.6e-159 564.3 410 68.5
Psat6g045400 Pisum sativum HOM05D002505 ORTHO05D007115 1.0e-158 563.9 413 69.7
Solyc08g082960.3 Solanum lycopersicum HOM05D002505 ORTHO05D007115 1.7e-158 563.1 410 68.8
LjContig00141g0018407 Lotus japonicus HOM05D002505 ORTHO05D007115 1.4e-157 560.1 413 67.8
Medtr5g025880 Medicago truncatula HOM05D002505 ORTHO05D007115 1.4e-157 560.1 404 69.6
Potri.003G145100 Populus trichocarpa HOM05D002505 ORTHO05D007115 1.9e-157 559.7 418 67.0
Glyma.04G232000 Glycine max HOM05D002505 ORTHO05D007115 1.2e-156 557.0 407 68.6
Ca_12566_v3 Cicer arietinum L. HOM05D002505 ORTHO05D007115 3.5e-156 555.4 387 71.3
Gohir.A12G238900 Gossypium hirsutum HOM05D002505 ORTHO05D007115 1.0e-155 553.9 411 67.9
Oeu010746.1 Olea europaea HOM05D002505 ORTHO05D007115 5.1e-155 551.6 408 67.4
VMungo1309G3079 Vigna mungo HOM05D002505 ORTHO05D007115 5.1e-155 551.6 408 68.4
Gohir.D12G240000 Gossypium hirsutum HOM05D002505 ORTHO05D007115 1.5e-154 550.1 411 67.9
arahy.Tifrunner.gnm1.ann1.31YZJ9 Arachis hypogaea HOM05D002505 ORTHO05D007115 2.5e-154 549.3 411 67.6
arahy.Tifrunner.gnm1.ann1.Y3P1ER Arachis hypogaea HOM05D002505 ORTHO05D007115 1.6e-153 546.6 411 67.2
Gorai.008G257100 Gossypium raimondii HOM05D002505 ORTHO05D007115 3.7e-153 545.4 411 67.4
Aqoxy5G02423 Aquilegia oxysepala HOM05D002505 ORTHO05D007115 6.2e-153 544.7 410 65.9
Phvul.009G039500 Phaseolus vulgaris HOM05D002505 ORTHO05D007115 1.1e-152 543.9 408 67.4
Nitab4.5_0005042g0030 Nicotiana tabacum HOM05D002505 ORTHO05D007115 1.8e-152 543.1 392 67.9
HanXRQChr02g0047181 Helianthus annuus HOM05D002505 ORTHO05D007115 5.3e-152 541.6 414 64.7
Ciclev10020379m.g Citrus clementina HOM05D002505 ORTHO05D007115 9.0e-152 540.8 413 66.3
Lalb_Chr10g0095811 Lupinus albus HOM05D002505 ORTHO05D007115 9.0e-152 540.8 413 67.6
MBI04_g06931_MAGBIO Magnolia biondii HOM05D002505 ORTHO05D007115 1.5e-151 540.0 410 67.8
Cpa.g.sc175.6 Carica papaya HOM05D002505 ORTHO05D007115 3.4e-151 538.9 383 68.9
AUR62007033 Chenopodium quinoa HOM05D002505 ORTHO05D007115 3.4e-151 538.9 413 65.1
Aqoxy5G01632 Aquilegia oxysepala HOM05D002505 ORTHO05D007115 5.0e-150 535.0 410 65.4
MSTRG.2011 Avicennia marina HOM05D002505 ORTHO05D007115 6.5e-150 534.6 415 65.3
Peaxi162Scf00074g00358 Petunia axillaris HOM05D002505 ORTHO05D007115 1.2e-148 530.4 382 67.3
CsaV3_5G036540 Cucumis sativus L. HOM05D002505 ORTHO05D007115 4.6e-148 528.5 397 68.3
AUR62019897 Chenopodium quinoa HOM05D002505 ORTHO05D007115 1.0e-147 527.3 410 63.4
Migut.J00879 Erythranthe guttata HOM05D002505 ORTHO05D007115 1.3e-147 526.9 413 63.7
SalBow6G5481 Salvia bowleyana HOM05D002505 ORTHO05D007115 1.3e-147 526.9 412 64.3
Cc00_g23270 Coffea canephora HOM05D002505 ORTHO05D007115 2.3e-147 526.2 418 65.8
Sed0001422 Sechium edule HOM05D002505 ORTHO05D007115 3.9e-147 525.4 404 66.6
Actinidia22196 Actinidia chinensis HOM05D002505 ORTHO05D007115 6.7e-147 524.6 416 68.0
ClCG05G020760 Citrullus lanatus HOM05D002505 ORTHO05D007115 1.3e-145 520.4 399 66.7
PSO339G4385 Papaver somniferum HOM05D002505 ORTHO05D007115 3.4e-143 512.3 420 61.0
Sabra01G0062100 Salix brachista HOM05D002505 ORTHO05D007115 7.7e-143 511.1 415 63.9
Dinv25607 Davidia involucrata HOM05D002505 ORTHO05D007115 2.9e-142 509.2 349 74.5
COL.COLO4_10772 Corchorus olitorius HOM05D002505 ORTHO05D007115 5.5e-141 505.0 351 72.4
Lsat_1_v5_gn_6_9040 Lactuca sativa HOM05D002505 ORTHO05D007115 7.9e-140 501.1 412 62.1
DCAR_009648 Daucus carota HOM05D002505 ORTHO05D007115 2.3e-139 499.6 395 61.5
PSO017G1033 Papaver somniferum HOM05D002505 ORTHO05D007115 1.1e-138 497.3 386 64.2
PSO384G5034 Papaver somniferum HOM05D002505 ORTHO05D007115 5.7e-138 495.0 421 59.6
Nn4g26685 Nelumbo nucifera HOM05D002505 ORTHO05D007115 3.7e-137 492.3 343 73.5
SGA_v2.0_scaffold104G30125 Striga asiatica HOM05D002505 ORTHO05D007115 1.4e-136 490.3 412 60.7
unitig_22.g5105 Utricularia gibba HOM05D002505 ORTHO05D007115 2.0e-135 486.5 403 60.3
CDE11G0043 Ceratophyllum demersum HOM05D002505 ORTHO05D007115 2.6e-135 486.1 417 61.2
PGR031G3103 Punica granatum HOM05D002505 ORTHO05D007115 1.4e-133 480.3 361 65.9
THA.LOC104823623 Tarenaya hassleriana HOM05D002505 ORTHO05D007115 9.4e-133 477.6 414 58.9
Os10g0520700 Oryza sativa ssp. japonica HOM05D002505 ORTHO05D007115 9.7e-130 467.6 389 58.9
MELO3C012450.2 Cucumis melo HOM05D002505 ORTHO05D007115 1.4e-128 463.8 368 65.8
Zm00001eb021220 Zea mays HOM05D002505 ORTHO05D007115 1.8e-128 463.4 405 57.0
PGSC0003DMG400012246 Solanum tuberosum HOM05D002505 ORTHO05D007115 5.3e-128 461.8 344 66.3
Aa31LG1G18070 Aethionema arabicum HOM05D002505 ORTHO05D007115 5.9e-127 458.4 423 56.5
Glyma.13G121900 Glycine max HOM05D002505 ORTHO05D007115 1.3e-126 457.2 347 66.3
EL10Ac5g12461 Beta vulgaris HOM05D002505 ORTHO05D007115 3.8e-126 455.7 358 61.5
CAN.G567.73 Capsicum annuum HOM05D002505 ORTHO05D007115 5.5e-125 451.8 349 64.2
Sp2g26890 Schrenkiella parvula HOM05D002505 ORTHO05D007115 4.7e-124 448.7 418 58.6
CARHR277730 Cardamine hirsuta HOM05D002505 ORTHO05D007115 3.0e-123 446.0 419 58.0
ATR0757G152 Amborella trichopoda HOM05D002505 ORTHO05D007115 2.2e-121 439.9 395 59.2
A06p30440 Brassica napus HOM05D002505 ORTHO05D007115 1.8e-120 436.8 418 56.7
C03p62620 Brassica napus HOM05D002505 ORTHO05D007115 2.4e-120 436.4 417 57.1
BolC3t18519H Brassica oleracea HOM05D002505 ORTHO05D007115 5.3e-120 435.3 417 56.8
BraA06t25993Z Brassica rapa HOM05D002505 ORTHO05D007115 7.0e-120 434.9 418 56.5
AT5G63830 Arabidopsis thaliana HOM05D002505 ORTHO05D007115 2.6e-119 433.0 417 56.6
BcaC01g02620 Brassica carinata HOM05D002505 ORTHO05D007115 1.3e-118 430.6 388 59.5
SEGI_04382 Sequoiadendron giganteum HOM05D002505 ORTHO05D007115 1.1e-117 427.6 430 51.9
FAN08G0319 Fragaria x ananassa HOM05D002505 ORTHO05D007115 5.5e-117 425.2 299 70.9
Thhalv10004334m.g Eutrema salsugineum HOM05D002505 ORTHO05D007115 4.4e-114 415.6 419 56.1
Carub.0008s2460 Capsella rubella HOM05D002505 ORTHO05D007115 3.7e-113 412.5 417 55.2
ECA240G2126 Erigeron canadensis HOM05D002505 ORTHO05D007115 2.4e-112 409.8 355 59.2
AL8G41060 Arabidopsis lyrata HOM05D002505 ORTHO05D007115 1.0e-110 404.4 417 54.4
HPP92_022335 Vanilla planifolia HOM05D002505 ORTHO05D007115 6.5e-110 401.7 448 47.5
HPP92_022360 Vanilla planifolia HOM05D002505 ORTHO05D007115 3.2e-109 399.4 461 46.6
Sc22g0004750 Simmondsia chinensis HOM05D002505 ORTHO05D007115 1.4e-91 340.9 265 63.0
SMO348G0019 Selaginella moellendorffii HOM05D002505 ORTHO05D007115 1.3e-89 334.3 372 46.5
Mapoly0049s0078 Marchantia polymorpha HOM05D002505 ORTHO05D007115 8.3e-89 331.6 465 38.9
Hma1.2p1_0456F.1_g156510 Hydrangea macrophylla HOM05D002505 ORTHO05D007115 1.6e-87 327.4 223 72.2
Pp3c16_17440 Physcomitrium patens HOM05D002505 ORTHO05D007115 3.0e-86 323.2 457 39.4
SEGI_16855 Sequoiadendron giganteum HOM05D002505 ORTHO05D007115 2.8e-84 316.6 316 51.9
vmacro04587 Vaccinium macrocarpon HOM05D002505 ORTHO05D007115 1.1e-83 314.7 352 52.8
RcHm_v2.0_Chr7g0184121 Rosa chinensis HOM05D002505 ORTHO05D007115 6.2e-76 288.9 198 71.7
FAN13G3213 Fragaria x ananassa HOM05D002505 ORTHO05D007115 4.4e-74 282.7 193 71.0
RhsimUnG0115700 Rhododendron simsii HOM05D002505 ORTHO05D007115 4.7e-68 262.7 278 51.1
Potri.001G085800 Populus trichocarpa HOM05D002505 ORTHO05D007115 8.1e-68 261.9 181 69.1
Atru.chr5.482 Acer truncatum HOM05D002505 ORTHO05D007115 1.3e-65 254.6 156 80.1
AagrBONN_evm.TU.Sc2ySwM_368.1194 Anthoceros agrestis HOM05D002505 ORTHO05D007115 4.2e-64 249.6 393 40.5
Medtr1g090530 Medicago truncatula HOM05D002505 ORTHO05D007115 3.0e-54 216.9 234 50.0
Rhsim10G0016900 Rhododendron simsii HOM05D000068 ORTHO05D004691 7.6e-50 202.2 133 75.9
Atru.chr5.483 Acer truncatum HOM05D002505 ORTHO05D007115 6.0e-47 192.6 130 73.1
MCO07G240 Micromonas commoda HOM05D002505 ORTHO05D007115 1.9e-45 187.6 408 31.9
FvH4_5g11280 Fragaria vesca HOM05D002505 ORTHO05D007115 2.9e-41 173.7 277 39.4
Zm00001eb044440 Zea mays HOM05D002505 ORTHO05D007115 3.8e-41 173.3 150 59.3
CBR_g20449 Chara braunii HOM05D002505 ORTHO05D007115 5.5e-40 169.5 319 33.2
FAN05G1175 Fragaria x ananassa HOM05D002505 ORTHO05D007115 7.4e-37 159.1 116 67.2
Actinidia04163 Actinidia chinensis HOM05D002436 ORTHO05D002754 1.4e-35 154.8 166 52.4
SMO285G0002 Selaginella moellendorffii HOM05D002505 ORTHO05D007115 2.4e-35 154.1 306 33.7
FAN14G3314 Fragaria x ananassa HOM05D002505 ORTHO05D007115 2.0e-34 151.0 153 52.3
Sc22g0004760 Simmondsia chinensis HOM05D002505 ORTHO05D007115 3.8e-33 146.7 94 72.3
Cre08.g379050 Chlamydomonas reinhardtii HOM05D002505 ORTHO05D007115 8.2e-28 129.0 603 24.5
RcHm_v2.0_Chr7g0184131 Rosa chinensis HOM05D002505 ORTHO05D007115 1.4e-24 118.2 81 70.4
Oeu004999.3 Olea europaea HOM05D002505 ORTHO05D007115 1.1e-16 92.0 95 51.6
CSS0027773 Camellia sinensis var. sinensis HOM05D003159 ORTHO05D003780 1.0e-14 85.5 51 80.4
FvH4_3g32050 Fragaria vesca HOM05D002505 ORTHO05D045879 4.8e-12 76.6 45 73.3
BraA06t26113Z Brassica rapa HOM05D005837 ORTHO05D007594 1.2e-10 72.0 100 44.0
HanXRQChr03g0061211 Helianthus annuus HOM05D002505 ORTHO05D007115 1.0e-09 68.9 81 43.2
SMO348G0061 Selaginella moellendorffii HOM05D002505 ORTHO05D007115 1.5e-08 65.1 156 31.4
MD05G1136200 Malus domestica HOM05D002505 ORTHO05D007115 1.8e-06 58.2 31 80.6


User provided reference genes

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