Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01019608001 Vitis vinifera HOM05D003895 ORTHO05D004723 0.0e+00 1481.1 725 100.0
Thecc.03G303200 Theobroma cacao HOM05D003895 ORTHO05D004723 0.0e+00 1301.2 734 85.6
PGR042G2513 Punica granatum HOM05D003895 ORTHO05D004723 0.0e+00 1298.9 735 84.8
Actinidia04389 Actinidia chinensis HOM05D003895 ORTHO05D004723 0.0e+00 1298.1 725 86.8
Oeu009988.1 Olea europaea HOM05D003895 ORTHO05D004723 0.0e+00 1297.7 730 84.9
Ciclev10024991m.g Citrus clementina HOM05D003895 ORTHO05D004723 0.0e+00 1297.3 733 84.9
Potri.003G143700 Populus trichocarpa HOM05D003895 ORTHO05D004723 0.0e+00 1297.0 732 85.9
Gorai.004G131300 Gossypium raimondii HOM05D003895 ORTHO05D004723 0.0e+00 1296.2 732 85.2
Potri.001G087400 Populus trichocarpa HOM05D003895 ORTHO05D004723 0.0e+00 1295.4 732 85.5
Gohir.D08G124600 Gossypium hirsutum HOM05D003895 ORTHO05D004723 0.0e+00 1291.9 732 85.1
TAR629G1064 Trochodendron aralioides HOM05D003895 ORTHO05D004723 0.0e+00 1290.8 738 84.8
Migut.E00651 Erythranthe guttata HOM05D003895 ORTHO05D004723 0.0e+00 1289.2 732 84.4
Cpa.g.sc15.11 Carica papaya HOM05D003895 ORTHO05D004723 0.0e+00 1288.5 742 84.4
Cc05_g02370 Coffea canephora HOM05D003895 ORTHO05D004723 0.0e+00 1288.1 733 84.7
CSS0003453 Camellia sinensis var. sinensis HOM05D003895 ORTHO05D004723 0.0e+00 1287.7 733 85.0
Manes.02G005900 Manihot esculenta HOM05D003895 ORTHO05D004723 0.0e+00 1287.3 732 84.4
Aqoxy2G01051 Aquilegia oxysepala HOM05D003895 ORTHO05D004723 0.0e+00 1286.6 734 84.1
Duzib068G0704 Durio zibethinus HOM05D003895 ORTHO05D004723 0.0e+00 1284.2 734 84.7
Rhsim07G0079800 Rhododendron simsii HOM05D003895 ORTHO05D004723 0.0e+00 1284.2 733 84.7
COL.COLO4_10753 Corchorus olitorius HOM05D003895 ORTHO05D004723 0.0e+00 1283.9 728 85.6
Ciclev10019024m.g Citrus clementina HOM05D003895 ORTHO05D004723 0.0e+00 1283.5 733 83.8
MSTRG.13762 Avicennia marina HOM05D003895 ORTHO05D004723 0.0e+00 1283.1 733 84.3
Eucgr.E01025 Eucalyptus grandis HOM05D003895 ORTHO05D004723 0.0e+00 1283.1 729 82.9
Nn3g20296 Nelumbo nucifera HOM05D003895 ORTHO05D004723 0.0e+00 1282.7 725 84.8
HanXRQChr03g0083671 Helianthus annuus HOM05D003895 ORTHO05D004723 0.0e+00 1279.6 726 85.0
SalBow2G2362 Salvia bowleyana HOM05D003895 ORTHO05D004723 0.0e+00 1278.8 729 84.6
Cc08_g16460 Coffea canephora HOM05D003895 ORTHO05D004723 0.0e+00 1277.7 727 84.2
DCAR_006502 Daucus carota HOM05D003895 ORTHO05D004723 0.0e+00 1277.7 733 83.5
Solyc08g082830.3 Solanum lycopersicum HOM05D003895 ORTHO05D004723 0.0e+00 1277.7 733 83.5
CSS0024936 Camellia sinensis var. sinensis HOM05D003895 ORTHO05D004723 0.0e+00 1277.3 733 84.4
QL02p029300 Quercus lobata HOM05D003895 ORTHO05D004723 0.0e+00 1277.3 732 84.3
PGSC0003DMG400012128 Solanum tuberosum HOM05D003895 ORTHO05D004723 0.0e+00 1277.3 733 83.5
CiPaw.11G115900 Carya illinoinensis HOM05D003895 ORTHO05D004723 0.0e+00 1276.9 734 84.3
Nitab4.5_0002439g0120 Nicotiana tabacum HOM05D003895 ORTHO05D004723 0.0e+00 1276.2 733 83.9
MD14G1134200 Malus domestica HOM05D003895 ORTHO05D004723 0.0e+00 1275.8 735 83.3
Prupe.5G126000 Prunus persica HOM05D003895 ORTHO05D004723 0.0e+00 1275.4 735 83.5
MELO3C005756.2 Cucumis melo HOM05D003895 ORTHO05D004723 0.0e+00 1275.0 725 84.4
Sabra01G0063700 Salix brachista HOM05D003895 ORTHO05D004723 0.0e+00 1274.6 729 84.6
RcHm_v2.0_Chr7g0186311 Rosa chinensis HOM05D003895 ORTHO05D004723 0.0e+00 1274.2 731 82.8
TWI60G1173 Tripterygium wilfordii HOM05D003895 ORTHO05D004723 0.0e+00 1274.2 732 84.4
CAN.G567.61 Capsicum annuum HOM05D003895 ORTHO05D004723 0.0e+00 1272.7 733 82.9
FAN04G2440 Fragaria x ananassa HOM05D003895 ORTHO05D004723 0.0e+00 1272.7 731 82.8
FAN08G0955 Fragaria x ananassa HOM05D003895 ORTHO05D004723 0.0e+00 1271.9 731 82.5
FvH4_5g11490 Fragaria vesca HOM05D003895 ORTHO05D004723 0.0e+00 1271.1 729 82.7
HanXRQChr06g0166321 Helianthus annuus HOM05D003895 ORTHO05D004723 0.0e+00 1271.1 725 84.3
FAN18G2619 Fragaria x ananassa HOM05D003895 ORTHO05D004723 0.0e+00 1270.0 729 82.6
FAN18G3428 Fragaria x ananassa HOM05D003895 ORTHO05D004723 0.0e+00 1270.0 729 82.6
Sabra03G0104100 Salix brachista HOM05D003895 ORTHO05D004723 0.0e+00 1270.0 774 80.6
Aa31LG2G1550 Aethionema arabicum HOM05D003895 ORTHO05D004723 0.0e+00 1268.8 726 83.9
Cfa011961 Carpinus fangiana HOM05D003895 ORTHO05D004723 0.0e+00 1267.3 735 83.0
ECA240G1010 Erigeron canadensis HOM05D003895 ORTHO05D004723 0.0e+00 1266.9 726 83.7
Nitab4.5_0002367g0210 Nicotiana tabacum HOM05D003895 ORTHO05D004723 0.0e+00 1266.9 725 84.3
MD06G1113100 Malus domestica HOM05D003895 ORTHO05D004723 0.0e+00 1266.1 735 82.4
PSO170G0459 Papaver somniferum HOM05D003895 ORTHO05D004723 0.0e+00 1262.7 736 81.9
THA.LOC104823616 Tarenaya hassleriana HOM05D003895 ORTHO05D004723 0.0e+00 1261.5 725 83.4
arahy.Tifrunner.gnm1.ann1.68E5M7 Arachis hypogaea HOM05D003895 ORTHO05D004723 0.0e+00 1258.0 732 82.9
Sopen08g031060 Solanum pennellii HOM05D003895 ORTHO05D004723 0.0e+00 1255.7 702 85.0
Medtr8g099885 Medicago truncatula HOM05D003895 ORTHO05D004723 0.0e+00 1255.0 733 82.3
Carub.0001s4358 Capsella rubella HOM05D003895 ORTHO05D004723 0.0e+00 1253.8 727 82.1
CANSAT54G0301 Cannabis sativa HOM05D003895 ORTHO05D004723 0.0e+00 1253.0 734 81.3
vmacro13870 Vaccinium macrocarpon HOM05D003895 ORTHO05D004723 0.0e+00 1252.7 775 78.8
AT1G55090 Arabidopsis thaliana HOM05D003895 ORTHO05D004723 0.0e+00 1252.3 727 81.8
Ca_17453_v3 Cicer arietinum L. HOM05D003895 ORTHO05D004723 0.0e+00 1252.3 734 82.0
Lj4g0018300 Lotus japonicus HOM05D003895 ORTHO05D004723 0.0e+00 1251.5 734 81.5
AL1G63080 Arabidopsis lyrata HOM05D003895 ORTHO05D004723 0.0e+00 1250.7 727 81.6
arahy.Tifrunner.gnm1.ann1.M62N24 Arachis hypogaea HOM05D003895 ORTHO05D004723 0.0e+00 1249.6 727 82.8
Hund14202 Selenicereus undatus HOM05D003895 ORTHO05D004723 0.0e+00 1249.2 734 81.7
BcaB07g33238 Brassica carinata HOM05D003895 ORTHO05D004723 0.0e+00 1248.8 728 81.7
Lalb_Chr16g0390761 Lupinus albus HOM05D003895 ORTHO05D004723 0.0e+00 1248.4 733 81.7
Thhalv10011266m.g Eutrema salsugineum HOM05D003895 ORTHO05D004723 0.0e+00 1247.6 727 81.3
CARHR044680 Cardamine hirsuta HOM05D003895 ORTHO05D004723 0.0e+00 1246.9 728 81.7
Psat7g023560 Pisum sativum HOM05D003895 ORTHO05D004723 0.0e+00 1246.9 733 81.0
Oeu059576.4 Olea europaea HOM05D003895 ORTHO05D004723 0.0e+00 1244.6 785 78.0
Sp1g40750 Schrenkiella parvula HOM05D003895 ORTHO05D004723 0.0e+00 1244.2 727 81.4
Haze_09120 Corylus avellana HOM05D003895 ORTHO05D004723 0.0e+00 1243.8 750 80.9
TPR.G3395 Trifolium pratense HOM05D003895 ORTHO05D004723 0.0e+00 1242.6 733 81.0
vmacro10679 Vaccinium macrocarpon HOM05D003895 ORTHO05D004723 0.0e+00 1241.9 780 77.8
vmacro22441 Vaccinium macrocarpon HOM05D003895 ORTHO05D004723 0.0e+00 1241.9 780 77.8
Lj4g0016220 Lotus japonicus HOM05D003895 ORTHO05D004723 0.0e+00 1240.7 734 80.8
Phvul.002G328900 Phaseolus vulgaris HOM05D003895 ORTHO05D004723 0.0e+00 1240.7 733 81.0
TPR.G18245 Trifolium pratense HOM05D003895 ORTHO05D004723 0.0e+00 1239.2 733 81.2
Glyma.05G219500 Glycine max HOM05D003895 ORTHO05D004723 0.0e+00 1237.6 733 81.2
BolC6t36080H Brassica oleracea HOM05D003895 ORTHO05D004723 0.0e+00 1234.6 729 80.5
BcaB04g17002 Brassica carinata HOM05D003895 ORTHO05D004723 0.0e+00 1233.4 727 80.9
BraA06t23255Z Brassica rapa HOM05D003895 ORTHO05D004723 0.0e+00 1233.0 730 80.3
BcaC01g01456 Brassica carinata HOM05D003895 ORTHO05D004723 0.0e+00 1231.5 727 80.9
A06p00400 Brassica napus HOM05D003895 ORTHO05D004723 0.0e+00 1231.5 730 80.1
A08p01020 Brassica napus HOM05D003895 ORTHO05D004723 0.0e+00 1230.3 727 80.6
C06p10070 Brassica napus HOM05D003895 ORTHO05D004723 0.0e+00 1229.9 729 80.4
BcaC08g43605 Brassica carinata HOM05D003895 ORTHO05D004723 0.0e+00 1229.2 729 80.5
VMungo0251G3777 Vigna mungo HOM05D003895 ORTHO05D004723 0.0e+00 1227.2 730 80.7
ClCG01G001820 Citrullus lanatus HOM05D003895 ORTHO05D004723 0.0e+00 1223.0 823 74.2
Lj2C160T5 Lonicera japonica HOM05D003895 ORTHO05D004723 0.0e+00 1211.1 733 80.6
EL10Ac5g12963 Beta vulgaris HOM05D003895 ORTHO05D004723 0.0e+00 1203.0 702 81.2
Peaxi162Scf00074g00431 Petunia axillaris HOM05D003895 ORTHO05D004723 0.0e+00 1200.7 733 80.2
Lsat_1_v5_gn_6_83601 Lactuca sativa HOM05D003895 ORTHO05D004723 0.0e+00 1193.7 725 80.4
AUR62029097 Chenopodium quinoa HOM05D003895 ORTHO05D004723 0.0e+00 1191.4 736 78.0
BraA08t32154Z Brassica rapa HOM05D003895 ORTHO05D004723 0.0e+00 1191.0 738 78.2
Psat7g023520 Pisum sativum HOM05D003895 ORTHO05D004723 0.0e+00 1191.0 726 78.2
BolC3t21537H Brassica oleracea HOM05D003895 ORTHO05D004723 0.0e+00 1190.3 739 78.2
C03p92220 Brassica napus HOM05D003895 ORTHO05D004723 0.0e+00 1189.1 739 78.1
AUR62015016 Chenopodium quinoa HOM05D003895 ORTHO05D004723 0.0e+00 1187.2 751 76.8
PSO339G2482 Papaver somniferum HOM05D003895 ORTHO05D004723 0.0e+00 1184.1 734 77.4
Sc01g0010470 Simmondsia chinensis HOM05D003895 ORTHO05D004723 0.0e+00 1183.7 664 84.9
Zm00001eb094700 Zea mays HOM05D003895 ORTHO05D004723 0.0e+00 1173.3 734 76.4
unitig_21.g20891 Utricularia gibba HOM05D003895 ORTHO05D004723 0.0e+00 1169.5 736 77.3
SGA_v2.0_scaffold295G47513 Striga asiatica HOM05D003895 ORTHO05D004723 0.0e+00 1167.9 728 79.0
PSO017G1958 Papaver somniferum HOM05D003895 ORTHO05D004723 0.0e+00 1158.3 736 76.8
HPP92_025338 Vanilla planifolia HOM05D003895 ORTHO05D004723 0.0e+00 1155.2 695 78.3
CsaV3_5G001970 Cucumis sativus L. HOM05D003895 ORTHO05D004723 0.0e+00 1154.0 660 83.8
TPR.G3413 Trifolium pratense HOM05D003895 ORTHO05D004723 0.0e+00 1152.9 725 75.7
Glyma.08G025800 Glycine max HOM05D003895 ORTHO05D004723 0.0e+00 1149.8 660 83.0
MBI02_g10555_MAGBIO Magnolia biondii HOM05D003895 ORTHO05D004723 0.0e+00 1138.6 742 73.9
ATR1098G082 Amborella trichopoda HOM05D003895 ORTHO05D004723 0.0e+00 1121.7 735 73.5
EL10Ac5g12472 Beta vulgaris HOM05D003895 ORTHO05D004723 0.0e+00 1109.0 697 75.8
Hma1.2p1_1835F.1_g304665 Hydrangea macrophylla HOM05D003895 ORTHO05D004723 0.0e+00 1102.4 617 85.7
Sed0021355 Sechium edule HOM05D003895 ORTHO05D004723 0.0e+00 1099.7 617 85.6
SEGI_31460 Sequoiadendron giganteum HOM05D003895 ORTHO05D004723 0.0e+00 1079.3 734 70.6
Dinv34692 Davidia involucrata HOM05D003895 ORTHO05D004723 1.3e-310 1069.3 586 87.4
Manes.02G005800 Manihot esculenta HOM05D003895 ORTHO05D004723 6.2e-305 1050.4 702 72.4
FAN13G0619 Fragaria x ananassa HOM05D003895 ORTHO05D004723 2.2e-302 1042.0 731 70.6
Ah.12g052950 Amaranthus hybridus HOM05D003895 ORTHO05D004723 7.3e-298 1026.9 753 70.8
CBR_g19728 Chara braunii HOM05D003895 ORTHO05D004723 1.5e-287 992.6 730 65.8
SMO174G0028 Selaginella moellendorffii HOM05D003895 ORTHO05D004723 4.5e-287 991.1 733 65.5
Mapoly0035s0052 Marchantia polymorpha HOM05D003895 ORTHO05D004723 7.1e-285 983.8 734 64.9
AUR62019884 Chenopodium quinoa HOM05D003895 ORTHO05D004723 5.6e-282 974.2 701 68.8
MCO17G006 Micromonas commoda HOM05D003895 ORTHO05D004723 4.2e-261 904.8 691 62.7
Os07g0167100 Oryza sativa ssp. japonica HOM05D003895 ORTHO05D004723 1.8e-259 899.4 568 77.3
Pp3c17_21910 Physcomitrium patens HOM05D003895 ORTHO05D004723 2.8e-257 892.1 670 65.4
AagrBONN_evm.TU.Sc2ySwM_228.4970 Anthoceros agrestis HOM05D003895 ORTHO05D004723 8.5e-254 880.6 652 66.0
Gohir.A08G111660 Gossypium hirsutum HOM05D003895 ORTHO05D004723 8.5e-254 880.6 506 85.0
SMO358G0326 Selaginella moellendorffii HOM05D003895 ORTHO05D004723 5.2e-251 871.3 695 60.4
PRCOL_00000896 Prasinoderma coloniale HOM05D003895 ORTHO05D004723 4.5e-239 831.6 715 57.8
Cre10.g435250 Chlamydomonas reinhardtii HOM05D003895 ORTHO05D004723 1.7e-238 829.7 790 54.1
Migut.E01630 Erythranthe guttata HOM05D003895 ORTHO05D004723 1.8e-224 783.1 503 76.3
Cfa024512 Carpinus fangiana HOM05D003895 ORTHO05D004723 5.2e-211 738.4 706 52.7
Hma1.2p1_0077F.1_g039630 Hydrangea macrophylla HOM05D003895 ORTHO05D004723 9.8e-210 734.2 418 84.4
MBI02_g43672_MAGBIO Magnolia biondii HOM05D003895 ORTHO05D004723 4.8e-180 635.6 423 73.5
PSO210G1536 Papaver somniferum HOM05D003895 ORTHO05D004723 1.2e-154 551.2 378 70.1
Aqoxy456s001 Aquilegia oxysepala HOM05D003895 ORTHO05D004723 1.3e-153 547.7 303 88.1
MBI05_g40947_MAGBIO Magnolia biondii HOM05D003895 ORTHO05D004723 1.1e-144 518.1 357 71.4
AUR62007020 Chenopodium quinoa HOM05D003895 ORTHO05D004723 2.5e-144 516.9 317 78.5
ECA246G1101 Erigeron canadensis HOM05D003895 ORTHO05D004723 7.9e-143 511.9 311 80.1
Haze_09105 Corylus avellana HOM05D003895 ORTHO05D004723 2.6e-133 480.3 350 72.9
MBI15_g06349_MAGBIO Magnolia biondii HOM05D003895 ORTHO05D004723 2.6e-125 453.8 321 68.2
MBI05_g43497_MAGBIO Magnolia biondii HOM05D003895 ORTHO05D004723 3.8e-113 413.3 283 70.0
SalBow2G1745 Salvia bowleyana HOM05D003895 ORTHO05D004723 4.9e-100 369.8 315 61.6
Gohir.A08G111640 Gossypium hirsutum HOM05D003895 ORTHO05D004723 2.7e-90 337.4 183 83.1
MBI05_g40946_MAGBIO Magnolia biondii HOM05D003895 ORTHO05D004723 2.7e-90 337.4 209 75.6
Psat7g023400 Pisum sativum HOM05D003895 ORTHO05D004723 3.9e-81 307.0 401 47.1
arahy.Tifrunner.gnm1.ann1.RT27P1 Arachis hypogaea HOM05D003895 ORTHO05D004723 1.7e-73 281.6 354 49.4
BcaB04g17000 Brassica carinata HOM05D003895 ORTHO05D004723 3.3e-72 277.3 215 65.6
SalBow2G0791 Salvia bowleyana HOM05D003895 ORTHO05D004723 2.8e-71 274.2 168 73.2
BcaB04g16999 Brassica carinata HOM05D003895 ORTHO05D004723 8.4e-68 262.7 264 56.8
SalBow2G2695 Salvia bowleyana HOM05D003895 ORTHO05D004723 6.6e-65 253.1 209 58.9
AagrBONN_evm.TU.Sc2ySwM_228.4951 Anthoceros agrestis HOM05D003895 ORTHO05D004723 2.4e-46 191.4 219 45.2
BcaB04g17001 Brassica carinata HOM05D003895 ORTHO05D004723 5.3e-46 190.3 201 54.7
DCAR_006503 Daucus carota HOM05D001368 ORTHO05D003846 1.2e-45 189.1 202 53.0
BcaB05g22068 Brassica carinata HOM05D003895 ORTHO05D004723 5.8e-45 186.8 131 64.9
BcaB01g00975 Brassica carinata HOM05D003895 ORTHO05D004723 2.5e-43 181.4 104 78.8
BcaB01g02352 Brassica carinata HOM05D003895 ORTHO05D004723 4.3e-32 144.1 80 80.0
BcaC01g01457 Brassica carinata HOM05D003895 ORTHO05D004723 4.1e-30 137.5 133 53.4
Sopen06g027550 Solanum pennellii HOM05D003895 ORTHO05D004723 1.2e-26 125.9 161 47.2
Nitab4.5_0000974g0050 Nicotiana tabacum HOM05D003895 ORTHO05D285369 9.7e-24 116.3 103 60.2
CARHR106400 Cardamine hirsuta HOM05D003895 ORTHO05D004723 1.4e-22 112.5 181 38.7
MBI15_g06350_MAGBIO Magnolia biondii HOM05D000011 ORTHO05D000018 9.1e-22 109.8 63 71.4
CARHR260480 Cardamine hirsuta HOM05D003895 ORTHO05D004723 2.0e-21 108.6 181 38.1
Lj4g0022111 Lotus japonicus HOM05D019175 ORTHO05D018974 5.0e-20 104.0 60 80.0
Solyc06g071240.3 Solanum lycopersicum HOM05D003895 ORTHO05D004723 1.6e-18 99.0 130 47.7
CAN.G628.62 Capsicum annuum HOM05D003895 ORTHO05D004723 1.0e-17 96.3 110 51.8
Nitab4.5_0001308g0060 Nicotiana tabacum HOM05D003895 ORTHO05D282403 1.0e-17 96.3 111 49.5
BcaB04g16998 Brassica carinata HOM05D003895 ORTHO05D004723 4.4e-16 90.9 54 70.4
BcaC01g01459 Brassica carinata HOM05D003895 ORTHO05D004723 1.1e-14 86.3 68 61.8
BcaC01g01463 Brassica carinata HOM05D003895 ORTHO05D004723 1.4e-14 85.9 67 62.7
Nitab4.5_0004376g0060 Nicotiana tabacum HOM05D003895 ORTHO05D286866 1.9e-11 75.5 50 76.0
Atru.chr9.1960 Acer truncatum HOM05D003895 ORTHO05D004723 2.0e-08 65.5 46 78.3
PGSC0003DMG400033059 Solanum tuberosum HOM05D003895 ORTHO05D004723 2.2e-07 62.0 40 67.5
Nitab4.5_0000050g0220 Nicotiana tabacum HOM05D003895 ORTHO05D285100 4.8e-07 60.8 46 71.7
Medtr3g108170 Medicago truncatula HOM05D003895 ORTHO05D260611 5.4e-06 57.4 265 27.2


User provided reference genes

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