Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01019593001 Vitis vinifera HOM05D005092 ORTHO05D006073 1.9e-50 202.2 102 100.0
Dinv38813 Davidia involucrata HOM05D005092 ORTHO05D006073 2.3e-48 195.3 102 95.1
Cpa.g.sc15.7 Carica papaya HOM05D005092 ORTHO05D006073 5.2e-48 194.1 102 95.1
CSS0040137 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 8.8e-48 193.4 102 95.1
Peaxi162Scf00117g00912 Petunia axillaris HOM05D005092 ORTHO05D006073 8.8e-48 193.4 102 94.1
Cc08_g16360 Coffea canephora HOM05D005092 ORTHO05D006073 2.6e-47 191.8 102 92.2
Nitab4.5_0004515g0010 Nicotiana tabacum HOM05D005092 ORTHO05D006073 3.3e-47 191.4 102 93.1
Potri.001G088300 Populus trichocarpa HOM05D005092 ORTHO05D006073 3.3e-47 191.4 102 92.2
Dinv37500 Davidia involucrata HOM05D005092 ORTHO05D006073 4.4e-47 191.0 100 96.0
DCAR_006514 Daucus carota HOM05D005092 ORTHO05D006073 5.7e-47 190.7 102 92.2
HanXRQChr17g0535041 Helianthus annuus HOM05D005092 ORTHO05D006073 5.7e-47 190.7 102 92.2
Manes.01G045210 Manihot esculenta HOM05D005092 ORTHO05D006073 5.7e-47 190.7 102 91.2
Nitab4.5_0002367g0080 Nicotiana tabacum HOM05D005092 ORTHO05D006073 5.7e-47 190.7 102 92.2
Nitab4.5_0006302g0010 Nicotiana tabacum HOM05D005092 ORTHO05D006073 5.7e-47 190.7 102 92.2
Gohir.D12G239300 Gossypium hirsutum HOM05D005092 ORTHO05D006073 9.7e-47 189.9 101 92.1
Gorai.008G256400 Gossypium raimondii HOM05D005092 ORTHO05D006073 9.7e-47 189.9 101 92.1
MBI07_g24777_MAGBIO Magnolia biondii HOM05D005092 ORTHO05D006073 9.7e-47 189.9 102 93.1
Sabra01G0064600 Salix brachista HOM05D005092 ORTHO05D006073 9.7e-47 189.9 102 90.2
Lsat_1_v5_gn_6_9541 Lactuca sativa HOM05D005092 ORTHO05D006073 1.3e-46 189.5 102 91.2
HanXRQChr17g0534641 Helianthus annuus HOM05D005092 ORTHO05D006073 2.2e-46 188.7 102 91.2
Thhalv10023690m.g Eutrema salsugineum HOM05D005092 ORTHO05D006073 2.8e-46 188.3 101 91.1
Solyc08g082690.2 Solanum lycopersicum HOM05D005092 ORTHO05D006073 2.8e-46 188.3 102 91.2
Sopen08g030910 Solanum pennellii HOM05D005092 ORTHO05D006073 2.8e-46 188.3 102 91.2
Ah.12g052820 Amaranthus hybridus HOM05D005092 ORTHO05D006073 3.7e-46 188.0 102 91.2
MD06G1111400 Malus domestica HOM05D005092 ORTHO05D006073 3.7e-46 188.0 102 91.2
Prupe.5G124200 Prunus persica HOM05D005092 ORTHO05D006073 3.7e-46 188.0 102 91.2
THA.LOC104809322 Tarenaya hassleriana HOM05D005092 ORTHO05D006073 3.7e-46 188.0 102 92.2
BcaB07g31470 Brassica carinata HOM05D005092 ORTHO05D006073 4.8e-46 187.6 101 91.1
BcaB07g31497 Brassica carinata HOM05D005092 ORTHO05D006073 4.8e-46 187.6 101 91.1
BcaC04g22575 Brassica carinata HOM05D005092 ORTHO05D006073 4.8e-46 187.6 101 91.1
A09p14390 Brassica napus HOM05D005092 ORTHO05D006073 4.8e-46 187.6 101 91.1
C09p17310 Brassica napus HOM05D005092 ORTHO05D006073 4.8e-46 187.6 101 91.1
C09p17730 Brassica napus HOM05D005092 ORTHO05D006073 4.8e-46 187.6 101 91.1
BolC9t54633H Brassica oleracea HOM05D005092 ORTHO05D006073 4.8e-46 187.6 101 91.1
BolC9t54667H Brassica oleracea HOM05D005092 ORTHO05D006073 4.8e-46 187.6 101 91.1
Carub.0002s0024 Capsella rubella HOM05D005092 ORTHO05D006073 6.3e-46 187.2 101 90.1
RcHm_v2.0_Chr7g0186131 Rosa chinensis HOM05D005092 ORTHO05D006073 6.3e-46 187.2 102 91.2
Sc07g0010130 Simmondsia chinensis HOM05D005092 ORTHO05D006073 6.3e-46 187.2 102 91.2
TAR425G0003 Trochodendron aralioides HOM05D005092 ORTHO05D006073 6.3e-46 187.2 102 91.2
Aa31LG2G1490 Aethionema arabicum HOM05D005092 ORTHO05D006073 8.2e-46 186.8 101 90.1
AL2G10290 Arabidopsis lyrata HOM05D005092 ORTHO05D006073 8.2e-46 186.8 101 90.1
CARHR046440 Cardamine hirsuta HOM05D005092 ORTHO05D006073 8.2e-46 186.8 101 90.1
FvH4_5g11660 Fragaria vesca HOM05D005092 ORTHO05D006073 8.2e-46 186.8 102 91.2
FAN04G2351 Fragaria x ananassa HOM05D005092 ORTHO05D006073 8.2e-46 186.8 102 91.2
FAN08G0879 Fragaria x ananassa HOM05D005092 ORTHO05D006073 8.2e-46 186.8 102 91.2
FAN13G0604 Fragaria x ananassa HOM05D005092 ORTHO05D006073 8.2e-46 186.8 102 91.2
FAN18G1279 Fragaria x ananassa HOM05D005092 ORTHO05D006073 8.2e-46 186.8 102 91.2
FAN18G3046 Fragaria x ananassa HOM05D005092 ORTHO05D006073 8.2e-46 186.8 102 91.2
MD14G1132700 Malus domestica HOM05D005092 ORTHO05D006073 8.2e-46 186.8 102 90.2
AT1G64510 Arabidopsis thaliana HOM05D005092 ORTHO05D006073 1.1e-45 186.4 101 90.1
Gohir.A12G238200 Gossypium hirsutum HOM05D005092 ORTHO05D006073 1.1e-45 186.4 101 90.1
AUR62007009 Chenopodium quinoa HOM05D005092 ORTHO05D006073 1.4e-45 186.0 102 90.2
AUR62019873 Chenopodium quinoa HOM05D005092 ORTHO05D006073 1.4e-45 186.0 102 90.2
Lalb_Chr09g0332211 Lupinus albus HOM05D005092 ORTHO05D006073 1.4e-45 186.0 102 90.2
PGSC0003DMG400012136 Solanum tuberosum HOM05D005092 ORTHO05D006073 1.4e-45 186.0 102 90.2
Cfa011974 Carpinus fangiana HOM05D005092 ORTHO05D006073 1.8e-45 185.7 102 89.2
Haze_09102 Corylus avellana HOM05D005092 ORTHO05D006073 1.8e-45 185.7 102 89.2
Hma1.2p1_0440F.1_g153550 Hydrangea macrophylla HOM05D005092 ORTHO05D006073 1.8e-45 185.7 102 90.2
Lj4g0014821 Lotus japonicus HOM05D005092 ORTHO05D006073 1.8e-45 185.7 102 89.2
Nn3g18958 Nelumbo nucifera HOM05D005092 ORTHO05D006073 1.8e-45 185.7 102 91.2
PSO135G0789 Papaver somniferum HOM05D005092 ORTHO05D006073 1.8e-45 185.7 102 90.2
PSO384G1727 Papaver somniferum HOM05D005092 ORTHO05D006073 1.8e-45 185.7 102 90.2
A09p14650 Brassica napus HOM05D005092 ORTHO05D006073 2.4e-45 185.3 101 90.1
BraA09t37086Z Brassica rapa HOM05D005092 ORTHO05D006073 2.4e-45 185.3 101 90.1
BraA09t37111Z Brassica rapa HOM05D005092 ORTHO05D006073 2.4e-45 185.3 101 90.1
HanXRQChr07g0190751 Helianthus annuus HOM05D005092 ORTHO05D006073 2.4e-45 185.3 102 89.2
Sp2g00240 Schrenkiella parvula HOM05D005092 ORTHO05D006073 2.4e-45 185.3 101 89.1
Actinidia04188 Actinidia chinensis HOM05D005092 ORTHO05D006073 4.1e-45 184.5 102 89.2
arahy.Tifrunner.gnm1.ann1.CJJ4VI Arachis hypogaea HOM05D005092 ORTHO05D006073 4.1e-45 184.5 102 89.2
Ciclev10022161m.g Citrus clementina HOM05D005092 ORTHO05D006073 4.1e-45 184.5 100 90.0
Sed0021119 Sechium edule HOM05D005092 ORTHO05D006073 4.1e-45 184.5 102 89.2
CANSAT21G1519 Cannabis sativa HOM05D005092 ORTHO05D006073 5.3e-45 184.1 102 88.2
CDE02G0126 Ceratophyllum demersum HOM05D005092 ORTHO05D006073 5.3e-45 184.1 102 89.2
Ah.07g197620 Amaranthus hybridus HOM05D005092 ORTHO05D006073 7.0e-45 183.7 102 88.2
Ca_17461_v3 Cicer arietinum L. HOM05D005092 ORTHO05D006073 7.0e-45 183.7 102 88.2
Thecc.03G302300 Theobroma cacao HOM05D005092 ORTHO05D006073 7.0e-45 183.7 102 88.2
arahy.Tifrunner.gnm1.ann1.99ISIC Arachis hypogaea HOM05D005092 ORTHO05D006073 9.1e-45 183.3 102 88.2
MSTRG.14949 Avicennia marina HOM05D005092 ORTHO05D006073 1.2e-44 183.0 102 88.2
QL02p029645 Quercus lobata HOM05D005092 ORTHO05D006073 1.6e-44 182.6 101 89.1
Duzib068G1375 Durio zibethinus HOM05D005092 ORTHO05D006073 2.0e-44 182.2 102 89.2
EL10Ac5g12949 Beta vulgaris HOM05D005092 ORTHO05D006073 2.6e-44 181.8 102 88.2
Duzib068G1058 Durio zibethinus HOM05D005092 ORTHO05D006073 2.6e-44 181.8 102 88.2
Psat7g023960 Pisum sativum HOM05D005092 ORTHO05D006073 3.5e-44 181.4 102 86.3
CiPaw.11G117500 Carya illinoinensis HOM05D005092 ORTHO05D006073 4.5e-44 181.0 100 89.0
ATR0602G266 Amborella trichopoda HOM05D005092 ORTHO05D006073 5.9e-44 180.6 102 86.3
Aqoxy7G00063 Aquilegia oxysepala HOM05D005092 ORTHO05D006073 5.9e-44 180.6 102 85.3
Migut.M00752 Erythranthe guttata HOM05D005092 ORTHO05D006073 5.9e-44 180.6 100 89.0
CDE02G4008 Ceratophyllum demersum HOM05D005092 ORTHO05D006073 7.7e-44 180.3 102 87.3
MELO3C005759.2 Cucumis melo HOM05D005092 ORTHO05D006073 1.0e-43 179.9 102 86.3
TWI81G0988 Tripterygium wilfordii HOM05D005092 ORTHO05D006073 1.3e-43 179.5 102 84.3
Duzib068G0950 Durio zibethinus HOM05D005092 ORTHO05D006073 1.7e-43 179.1 102 87.3
SalBow8G0392 Salvia bowleyana HOM05D005092 ORTHO05D006073 2.2e-43 178.7 100 87.0
Glyma.05G218800 Glycine max HOM05D005092 ORTHO05D006073 2.9e-43 178.3 102 87.3
Glyma.08G024900 Glycine max HOM05D005092 ORTHO05D006073 2.9e-43 178.3 102 87.3
Lj8A204G63 Lonicera japonica HOM05D005092 ORTHO05D006073 2.9e-43 178.3 102 83.3
unitig_62.g23053 Utricularia gibba HOM05D005092 ORTHO05D006073 2.9e-43 178.3 100 87.0
COL.COLO4_10743 Corchorus olitorius HOM05D005092 ORTHO05D006073 5.0e-43 177.6 101 82.2
Phvul.002G300600 Phaseolus vulgaris HOM05D005092 ORTHO05D006073 5.0e-43 177.6 102 84.3
CDE08G0689 Ceratophyllum demersum HOM05D005092 ORTHO05D006073 6.5e-43 177.2 102 84.3
Atru.chr9.1939 Acer truncatum HOM05D005092 ORTHO05D006073 1.5e-42 176.0 100 84.0
Medtr8g099720 Medicago truncatula HOM05D005092 ORTHO05D006073 1.5e-42 176.0 100 86.0
Actinidia22183 Actinidia chinensis HOM05D005092 ORTHO05D006073 1.9e-42 175.6 102 85.3
TPR.G3401 Trifolium pratense HOM05D005092 ORTHO05D006073 1.9e-42 175.6 100 86.0
Rhsim02G0248400 Rhododendron simsii HOM05D005092 ORTHO05D006073 4.2e-42 174.5 102 84.3
Lalb_Chr14g0362701 Lupinus albus HOM05D005092 ORTHO05D006073 6.1e-41 170.6 102 81.4
CSS0022378 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 1.4e-40 169.5 91 92.3
CSS0038140 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 1.4e-40 169.5 91 92.3
CSS0048233 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 1.4e-40 169.5 91 92.3
CsaV3_5G001930 Cucumis sativus L. HOM05D005092 ORTHO05D006073 1.4e-40 169.5 95 87.4
Lj2A163T69 Lonicera japonica HOM05D005092 ORTHO05D006073 1.4e-40 169.5 102 81.4
SGA_v2.0_scaffold34G13767 Striga asiatica HOM05D005092 ORTHO05D006073 1.5e-39 166.0 100 79.0
Atru.chr10.1577 Acer truncatum HOM05D005092 ORTHO05D006073 4.4e-39 164.5 93 83.9
BcaC04g22614 Brassica carinata HOM05D005092 ORTHO05D006073 5.7e-39 164.1 89 88.8
HPP92_003891 Vanilla planifolia HOM05D005092 ORTHO05D006073 7.5e-39 163.7 101 78.2
Migut.M00753 Erythranthe guttata HOM05D005092 ORTHO05D006073 9.7e-39 163.3 100 80.0
HPP92_003874 Vanilla planifolia HOM05D003037 ORTHO05D003659 9.7e-39 163.3 101 78.2
vmacro11536 Vaccinium macrocarpon HOM05D005092 ORTHO05D006073 1.7e-38 162.5 101 81.2
Nitab4.5_0015800g0020 Nicotiana tabacum HOM05D005092 ORTHO05D006073 2.8e-38 161.8 102 82.4
PGR031G0045 Punica granatum HOM05D005092 ORTHO05D006073 4.1e-37 157.9 155 57.4
Os03g0843400 Oryza sativa ssp. japonica HOM05D005092 ORTHO05D006073 1.6e-36 156.0 101 76.2
SalBow7G2047 Salvia bowleyana HOM05D005092 ORTHO05D006073 2.7e-36 155.2 102 72.5
SalBow7G3059 Salvia bowleyana HOM05D005092 ORTHO05D006073 2.7e-36 155.2 102 72.5
Zm00001eb064130 Zea mays HOM05D005092 ORTHO05D006073 4.5e-36 154.5 101 75.2
Eucgr.D01771 Eucalyptus grandis HOM05D005092 ORTHO05D006073 5.9e-36 154.1 81 93.8
Peaxi162Scf00074g00540 Petunia axillaris HOM05D005092 ORTHO05D006073 6.5e-35 150.6 80 91.2
CSS0033480 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 8.5e-35 150.2 111 73.9
CAN.G567.28 Capsicum annuum HOM05D005092 ORTHO05D006073 2.5e-34 148.7 100 76.0
Hund11375 Selenicereus undatus HOM05D005092 ORTHO05D006073 4.2e-34 147.9 102 70.6
Mapoly0115s0060 Marchantia polymorpha HOM05D005092 ORTHO05D006073 1.2e-31 139.8 97 66.0
Pp3c15_17560 Physcomitrium patens HOM05D005092 ORTHO05D006073 5.7e-31 137.5 97 63.9
Pp3c9_9180 Physcomitrium patens HOM05D005092 ORTHO05D006073 2.2e-30 135.6 97 62.9
SMO141G0012 Selaginella moellendorffii HOM05D005092 ORTHO05D006073 6.3e-30 134.0 97 60.8
AagrBONN_evm.TU.Sc2ySwM_117.1171 Anthoceros agrestis HOM05D005092 ORTHO05D006073 1.4e-29 132.9 97 62.9
CBR_g45689 Chara braunii HOM05D005092 ORTHO05D006073 1.8e-29 132.5 97 61.9
CSS0046261 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 5.0e-27 124.4 67 89.6
CSS0048158 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 5.0e-27 124.4 67 89.6
vmacro22558 Vaccinium macrocarpon HOM05D005092 ORTHO05D006073 6.5e-27 124.0 80 78.8
SEGI_34901 Sequoiadendron giganteum HOM05D005092 ORTHO05D006073 2.3e-24 115.5 80 68.8
ECA233G5643 Erigeron canadensis HOM05D005092 ORTHO05D006073 2.8e-22 108.6 61 86.9
Sabra03G0103200 Salix brachista HOM05D005092 ORTHO05D006073 3.5e-20 101.7 111 56.8
A01p35480 Brassica napus HOM05D005092 ORTHO05D006073 3.7e-14 81.6 50 76.0
A04p11060 Brassica napus HOM05D023372 ORTHO05D024533 4.4e-07 58.2 38 73.7
ClCG01G001790 Citrullus lanatus HOM05D005092 ORTHO05D006073 3.7e-06 55.1 31 80.6


User provided reference genes

Program Settings