Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01019535001 Vitis vinifera HOM05D004051 ORTHO05D004480 1.6e-39 165.6 85 100.0
TAR629G1304 Trochodendron aralioides HOM05D004051 ORTHO05D004480 8.7e-25 116.7 85 69.4
Dinv29295 Davidia involucrata HOM05D004051 ORTHO05D004480 2.1e-23 112.1 82 70.7
Nn1g01872 Nelumbo nucifera HOM05D004051 ORTHO05D004480 3.7e-23 111.3 85 64.7
Dinv37531 Davidia involucrata HOM05D004051 ORTHO05D004480 1.1e-22 109.8 85 70.6
Dinv38829 Davidia involucrata HOM05D004051 ORTHO05D004480 4.0e-22 107.8 85 69.4
CSS0023187 Camellia sinensis var. sinensis HOM05D004051 ORTHO05D004480 7.6e-21 103.6 85 64.7
CSS0008906 Camellia sinensis var. sinensis HOM05D004051 ORTHO05D004480 1.0e-20 103.2 85 65.9
Nn3g19011 Nelumbo nucifera HOM05D004051 ORTHO05D004480 3.8e-20 101.3 80 65.0
Manes.02G009700 Manihot esculenta HOM05D004051 ORTHO05D004480 8.4e-20 100.1 85 68.2
Gohir.D12G237933 Gossypium hirsutum HOM05D004051 ORTHO05D004480 1.4e-19 99.4 85 63.5
Gorai.008G254600 Gossypium raimondii HOM05D004051 ORTHO05D004480 1.4e-19 99.4 85 63.5
Thecc.03G298400 Theobroma cacao HOM05D004051 ORTHO05D004480 1.9e-19 99.0 85 63.5
Actinidia22162 Actinidia chinensis HOM05D004051 ORTHO05D004480 2.5e-19 98.6 85 64.7
Duzib205G1876 Durio zibethinus HOM05D004051 ORTHO05D004480 2.5e-19 98.6 85 63.5
Gorai.004G111400 Gossypium raimondii HOM05D004051 ORTHO05D004480 2.5e-19 98.6 91 62.6
HanXRQChr03g0083481 Helianthus annuus HOM05D004051 ORTHO05D004480 2.5e-19 98.6 85 62.4
Migut.A00641 Erythranthe guttata HOM05D004051 ORTHO05D004480 4.2e-19 97.8 86 60.5
Actinidia04200 Actinidia chinensis HOM05D004051 ORTHO05D004480 5.5e-19 97.4 85 64.7
Gohir.D08G104000 Gossypium hirsutum HOM05D004051 ORTHO05D004480 5.5e-19 97.4 91 61.5
CDE09G0659 Ceratophyllum demersum HOM05D004051 ORTHO05D004480 7.1e-19 97.1 85 60.0
arahy.Tifrunner.gnm1.ann1.T1KBZJ Arachis hypogaea HOM05D004051 ORTHO05D004480 1.6e-18 95.9 84 64.3
CiPaw.11G121000 Carya illinoinensis HOM05D004051 ORTHO05D004480 1.6e-18 95.9 85 63.5
Gohir.A12G236600 Gossypium hirsutum HOM05D004051 ORTHO05D004480 1.6e-18 95.9 85 62.4
CiPaw.05G255100 Carya illinoinensis HOM05D004051 ORTHO05D004480 2.7e-18 95.1 84 60.7
Gohir.A08G096024 Gossypium hirsutum HOM05D004051 ORTHO05D004480 2.7e-18 95.1 91 61.5
Manes.06G159300 Manihot esculenta HOM05D004051 ORTHO05D004480 2.7e-18 95.1 87 63.2
Prupe.5G120400 Prunus persica HOM05D004051 ORTHO05D004480 2.7e-18 95.1 85 63.5
arahy.Tifrunner.gnm1.ann1.E0UY0G Arachis hypogaea HOM05D004051 ORTHO05D004480 3.5e-18 94.7 84 65.5
CiPaw.05G252200 Carya illinoinensis HOM05D004051 ORTHO05D004480 4.6e-18 94.4 84 60.7
CDE02G2345 Ceratophyllum demersum HOM05D004051 ORTHO05D004480 7.9e-18 93.6 79 62.0
Lalb_Chr05g0224141 Lupinus albus HOM05D004051 ORTHO05D004480 7.9e-18 93.6 85 64.7
MBI06_g08462_MAGBIO Magnolia biondii HOM05D004051 ORTHO05D004480 7.9e-18 93.6 86 60.5
Psat7g025560 Pisum sativum HOM05D004051 ORTHO05D004480 7.9e-18 93.6 85 60.0
Thecc.03G195700 Theobroma cacao HOM05D004051 ORTHO05D004480 7.9e-18 93.6 89 62.9
Sc13g0009750 Simmondsia chinensis HOM05D004051 ORTHO05D004480 1.0e-17 93.2 78 64.1
Glyma.11G017600 Glycine max HOM05D004051 ORTHO05D004480 1.8e-17 92.4 85 67.1
CiPaw.05G255500 Carya illinoinensis HOM05D004051 ORTHO05D004480 2.3e-17 92.0 84 59.5
Potri.003G140300 Populus trichocarpa HOM05D004051 ORTHO05D004480 2.3e-17 92.0 86 60.5
TWI81G0780 Tripterygium wilfordii HOM05D004051 ORTHO05D004480 3.0e-17 91.7 85 63.5
QL02p030350 Quercus lobata HOM05D004051 ORTHO05D004480 3.9e-17 91.3 85 61.2
Atru.chr1.148 Acer truncatum HOM05D004051 ORTHO05D004480 5.1e-17 90.9 81 64.2
TWI15G0384 Tripterygium wilfordii HOM05D004051 ORTHO05D004480 5.1e-17 90.9 85 60.0
THA.LOC104815090 Tarenaya hassleriana HOM05D004051 ORTHO05D004480 6.7e-17 90.5 90 60.0
Glyma.01G225400 Glycine max HOM05D004051 ORTHO05D004480 8.7e-17 90.1 86 61.6
Oeu054023.1 Olea europaea HOM05D004051 ORTHO05D004480 8.7e-17 90.1 80 66.2
Oeu063517.1 Olea europaea HOM05D004051 ORTHO05D004480 8.7e-17 90.1 87 59.8
Rhsim09G0205000 Rhododendron simsii HOM05D004051 ORTHO05D004480 8.7e-17 90.1 85 58.8
LjContig00312_ERROPOS870357g0027890 Lotus japonicus HOM05D004051 ORTHO05D004480 1.1e-16 89.7 85 60.0
Actinidia03163 Actinidia chinensis HOM05D004051 ORTHO05D004480 1.9e-16 89.0 83 59.0
Phvul.002G164300 Phaseolus vulgaris HOM05D004051 ORTHO05D004480 1.9e-16 89.0 85 60.0
Ciclev10023430m.g Citrus clementina HOM05D004051 ORTHO05D004480 2.5e-16 88.6 85 60.0
PGR042G3499 Punica granatum HOM05D004051 ORTHO05D004480 2.5e-16 88.6 87 54.0
AUR62019374 Chenopodium quinoa HOM05D004051 ORTHO05D004480 4.3e-16 87.8 81 56.8
Hma1.2p1_1461F.1_g285050 Hydrangea macrophylla HOM05D004051 ORTHO05D004480 4.3e-16 87.8 81 63.0
Hma1.2p1_2808F.1_g328863 Hydrangea macrophylla HOM05D004051 ORTHO05D004480 4.3e-16 87.8 81 63.0
BcaB07g29898 Brassica carinata HOM05D004051 ORTHO05D004480 5.7e-16 87.4 82 57.3
Duzib084G0187 Durio zibethinus HOM05D000749 ORTHO05D005685 7.4e-16 87.0 80 62.5
Gohir.D12G237800 Gossypium hirsutum HOM05D004051 ORTHO05D004480 9.7e-16 86.7 80 60.0
Phvul.002G298100 Phaseolus vulgaris HOM05D004051 ORTHO05D004480 9.7e-16 86.7 87 58.6
Potri.012G011600 Populus trichocarpa HOM05D004051 ORTHO05D004480 9.7e-16 86.7 85 55.3
Sp2g23150 Schrenkiella parvula HOM05D004051 ORTHO05D004480 9.7e-16 86.7 81 55.6
PSO063G6907 Papaver somniferum HOM05D004051 ORTHO05D004480 1.3e-15 86.3 85 56.5
QL09p009613 Quercus lobata HOM05D004051 ORTHO05D004480 1.6e-15 85.9 84 58.3
COL.COLO4_10706 Corchorus olitorius HOM05D004051 ORTHO05D004480 2.2e-15 85.5 81 61.7
ECA240G0536 Erigeron canadensis HOM05D004051 ORTHO05D004480 2.2e-15 85.5 87 55.2
AL6G35560 Arabidopsis lyrata HOM05D004051 ORTHO05D004480 2.8e-15 85.1 79 58.2
Ciclev10006352m.g Citrus clementina HOM05D004051 ORTHO05D004480 2.8e-15 85.1 75 62.7
Hund04853 Selenicereus undatus HOM05D004051 ORTHO05D004480 2.8e-15 85.1 82 62.2
vmacro11468 Vaccinium macrocarpon HOM05D004051 ORTHO05D004480 2.8e-15 85.1 80 60.0
DCAR_010606 Daucus carota HOM05D004051 ORTHO05D004480 3.7e-15 84.7 84 56.0
RcHm_v2.0_Chr7g0194731 Rosa chinensis HOM05D004051 ORTHO05D004480 4.8e-15 84.3 85 58.8
FAN08G0063 Fragaria x ananassa HOM05D004051 ORTHO05D004480 6.3e-15 84.0 85 58.8
BcaNung01214 Brassica carinata HOM05D004051 ORTHO05D004480 8.2e-15 83.6 79 57.0
BcaNung01808 Brassica carinata HOM05D004051 ORTHO05D004480 8.2e-15 83.6 82 53.7
AT5G24165 Arabidopsis thaliana HOM05D004051 ORTHO05D004480 1.1e-14 83.2 79 57.0
Carub.0006s2191 Capsella rubella HOM05D004051 ORTHO05D004480 1.1e-14 83.2 79 57.0
Lj4g0013283 Lotus japonicus HOM05D004051 ORTHO05D004480 1.1e-14 83.2 80 57.5
Cc08_g16090 Coffea canephora HOM05D004051 ORTHO05D004480 1.4e-14 82.8 82 57.3
arahy.Tifrunner.gnm1.ann1.ZDLG37 Arachis hypogaea HOM05D004051 ORTHO05D004480 1.8e-14 82.4 82 57.3
CARHR189350 Cardamine hirsuta HOM05D004051 ORTHO05D004480 1.8e-14 82.4 79 57.0
HanXRQChr13g0415281 Helianthus annuus HOM05D004051 ORTHO05D004480 1.8e-14 82.4 84 59.5
Thhalv10005218m.g Eutrema salsugineum HOM05D004051 ORTHO05D004480 2.4e-14 82.0 82 54.9
Sed0004965 Sechium edule HOM05D004051 ORTHO05D004480 2.4e-14 82.0 85 55.3
CANSAT21G2574 Cannabis sativa HOM05D004051 ORTHO05D004480 3.1e-14 81.6 84 54.8
Atru.chr9.1978 Acer truncatum HOM05D004051 ORTHO05D004480 4.1e-14 81.3 80 61.2
Atru.chr9.1993 Acer truncatum HOM05D004051 ORTHO05D004480 4.1e-14 81.3 80 61.2
A02p40750 Brassica napus HOM05D004051 ORTHO05D004480 6.9e-14 80.5 82 54.9
DCAR_006488 Daucus carota HOM05D004051 ORTHO05D004480 6.9e-14 80.5 79 55.7
MD06G1107300 Malus domestica HOM05D004051 ORTHO05D004480 9.0e-14 80.1 82 53.7
Solyc08g008330.3 Solanum lycopersicum HOM05D004051 ORTHO05D004480 9.0e-14 80.1 85 52.9
Sopen08g004210 Solanum pennellii HOM05D004051 ORTHO05D004480 9.0e-14 80.1 85 52.9
Eucgr.E00869 Eucalyptus grandis HOM05D004051 ORTHO05D004480 1.2e-13 79.7 85 56.5
TPR.G25572 Trifolium pratense HOM05D004051 ORTHO05D004480 1.2e-13 79.7 81 54.3
FvH4_5g04640 Fragaria vesca HOM05D004051 ORTHO05D004480 1.5e-13 79.3 85 56.5
FAN01G1391 Fragaria x ananassa HOM05D004051 ORTHO05D004480 1.5e-13 79.3 84 53.6
FAN18G0508 Fragaria x ananassa HOM05D004051 ORTHO05D004480 1.5e-13 79.3 85 56.5
Sp7g21840 Schrenkiella parvula HOM05D004051 ORTHO05D004480 1.5e-13 79.3 85 52.9
CARHR231280 Cardamine hirsuta HOM05D004051 ORTHO05D004480 2.0e-13 79.0 85 54.1
FvH4_7g31780 Fragaria vesca HOM05D004051 ORTHO05D004480 2.0e-13 79.0 84 53.6
Sed0007169 Sechium edule HOM05D004051 ORTHO05D004480 3.4e-13 78.2 82 53.7
SGA_v2.0_scaffold96G29014 Striga asiatica HOM05D004051 ORTHO05D004480 3.4e-13 78.2 80 55.0
HPP92_020160 Vanilla planifolia HOM05D004051 ORTHO05D004480 3.4e-13 78.2 101 49.5
Aa31LG6G7140 Aethionema arabicum HOM05D004051 ORTHO05D004480 5.9e-13 77.4 85 55.3
FAN13G0943 Fragaria x ananassa HOM05D004051 ORTHO05D004480 5.9e-13 77.4 84 56.0
BcaNung01095 Brassica carinata HOM05D004051 ORTHO05D004480 7.7e-13 77.0 85 51.8
BcaNung04241 Brassica carinata HOM05D004051 ORTHO05D004480 7.7e-13 77.0 81 54.3
PGR042G1109 Punica granatum HOM05D004051 ORTHO05D004480 7.7e-13 77.0 85 54.1
Carub.0007s1723 Capsella rubella HOM05D004051 ORTHO05D004480 1.0e-12 76.6 85 51.8
Thhalv10026982m.g Eutrema salsugineum HOM05D004051 ORTHO05D004480 1.0e-12 76.6 85 50.6
BcaC09g50935 Brassica carinata HOM05D004051 ORTHO05D004480 1.3e-12 76.3 85 50.6
FAN10G0142 Fragaria x ananassa HOM05D004051 ORTHO05D004480 1.3e-12 76.3 84 52.4
Medtr8g099465 Medicago truncatula HOM05D004051 ORTHO05D004480 1.3e-12 76.3 74 55.4
unitig_88.g27640 Utricularia gibba HOM05D004051 ORTHO05D004480 1.3e-12 76.3 80 53.8
AT4G23885 Arabidopsis thaliana HOM05D004051 ORTHO05D004480 2.2e-12 75.5 85 50.6
C07p43550 Brassica napus HOM05D004051 ORTHO05D004480 3.8e-12 74.7 79 50.6
RcHm_v2.0_Chr1g0381011 Rosa chinensis HOM05D004051 ORTHO05D004480 5.0e-12 74.3 84 51.2
SalBow1G7115 Salvia bowleyana HOM05D004051 ORTHO05D004480 5.0e-12 74.3 82 53.7
Ah.07g197450 Amaranthus hybridus HOM05D004051 ORTHO05D004480 6.5e-12 73.9 84 54.8
GSVIVG01038715001 Vitis vinifera HOM05D004051 ORTHO05D004480 6.5e-12 73.9 75 57.3
AL7G29460 Arabidopsis lyrata HOM05D004051 ORTHO05D004480 8.5e-12 73.6 85 50.6
Sc01g0010310 Simmondsia chinensis HOM05D004051 ORTHO05D004480 8.5e-12 73.6 85 54.1
FAN10G1914 Fragaria x ananassa HOM05D004051 ORTHO05D004480 1.1e-11 73.2 91 50.5
MD06G1107200 Malus domestica HOM05D004051 ORTHO05D004480 1.1e-11 73.2 80 51.2
Sabra03G0101300 Salix brachista HOM05D004051 ORTHO05D004480 1.1e-11 73.2 94 51.1
SalBow1G2120 Salvia bowleyana HOM05D004051 ORTHO05D004480 1.1e-11 73.2 82 53.7
Sopen08g030650 Solanum pennellii HOM05D004051 ORTHO05D004480 1.1e-11 73.2 81 54.3
VMungo0251G1927 Vigna mungo HOM05D000749 ORTHO05D005685 1.1e-11 73.2 81 55.6
Peaxi162Scf00102g01842 Petunia axillaris HOM05D004051 ORTHO05D004480 1.4e-11 72.8 84 51.2
Aa31LG11G3430 Aethionema arabicum HOM05D004051 ORTHO05D004480 1.9e-11 72.4 78 53.8
EL10Ac5g12918 Beta vulgaris HOM05D004051 ORTHO05D004480 1.9e-11 72.4 85 50.6
MD01G1219400 Malus domestica HOM05D004051 ORTHO05D004480 1.9e-11 72.4 86 53.5
BolC7t44882H Brassica oleracea HOM05D004051 ORTHO05D004480 3.2e-11 71.6 77 49.4
ClCG01G000480 Citrullus lanatus HOM05D004051 ORTHO05D004480 3.2e-11 71.6 77 53.2
Solyc08g082390.3 Solanum lycopersicum HOM05D004051 ORTHO05D004480 3.2e-11 71.6 81 53.1
BcaNung04081 Brassica carinata HOM05D004051 ORTHO05D004480 7.2e-11 70.5 85 48.2
Lj2A167G43 Lonicera japonica HOM05D004051 ORTHO05D004480 7.2e-11 70.5 62 61.3
EL10Ac3g05304 Beta vulgaris HOM05D004051 ORTHO05D004480 2.1e-10 68.9 78 50.0
Ca_17505_v3 Cicer arietinum L. HOM05D000749 ORTHO05D005685 2.1e-10 68.9 78 50.0
MELO3C005880.2 Cucumis melo HOM05D004051 ORTHO05D004480 2.1e-10 68.9 77 54.5
PGSC0003DMG400005791 Solanum tuberosum HOM05D004051 ORTHO05D004480 2.1e-10 68.9 82 51.2
Haze_09066 Corylus avellana HOM05D004051 ORTHO05D004480 2.7e-10 68.6 65 61.5
FAN18G2387 Fragaria x ananassa HOM05D004051 ORTHO05D004480 2.7e-10 68.6 79 54.4
A06p35000 Brassica napus HOM05D004051 ORTHO05D004480 3.6e-10 68.2 79 48.1
PGSC0003DMG400012279 Solanum tuberosum HOM05D004051 ORTHO05D004480 3.6e-10 68.2 81 53.1
THA.LOC104821369 Tarenaya hassleriana HOM05D004051 ORTHO05D004480 3.6e-10 68.2 88 47.7
HPP92_020177 Vanilla planifolia HOM05D004051 ORTHO05D004480 4.6e-10 67.8 95 47.4
A01p15190 Brassica napus HOM05D004051 ORTHO05D004480 1.0e-09 66.6 82 50.0
C01p19120 Brassica napus HOM05D004051 ORTHO05D004480 1.0e-09 66.6 82 47.6
C07p53180 Brassica napus HOM05D004051 ORTHO05D004480 1.0e-09 66.6 76 51.3
ClCG01G001670 Citrullus lanatus HOM05D004051 ORTHO05D004480 1.0e-09 66.6 88 47.7
BraA06t26423Z Brassica rapa HOM05D004051 ORTHO05D004480 1.4e-09 66.2 77 48.1
BraA01t01457Z Brassica rapa HOM05D004051 ORTHO05D004480 1.8e-09 65.9 82 48.8
FAN03G1224 Fragaria x ananassa HOM05D004051 ORTHO05D004480 2.3e-09 65.5 79 49.4
Hund14219 Selenicereus undatus HOM05D004051 ORTHO05D004480 3.0e-09 65.1 78 53.8
BolC1t01838H Brassica oleracea HOM05D004051 ORTHO05D004480 3.9e-09 64.7 80 46.2
AUR62006115 Chenopodium quinoa HOM05D004051 ORTHO05D004480 3.9e-09 64.7 60 53.3
CsaV3_5G001830 Cucumis sativus L. HOM05D000749 ORTHO05D005685 5.1e-09 64.3 94 44.7
Eucgr.C00183 Eucalyptus grandis HOM05D004051 ORTHO05D004480 5.1e-09 64.3 59 57.6
A03p54820 Brassica napus HOM05D004051 ORTHO05D004480 6.7e-09 63.9 74 54.1
BraA03t14549Z Brassica rapa HOM05D004051 ORTHO05D004480 6.7e-09 63.9 74 54.1
AUR62010843 Chenopodium quinoa HOM05D004051 ORTHO05D004480 6.7e-09 63.9 80 47.5
AagrBONN_evm.TU.Sc2ySwM_369.239 Anthoceros agrestis HOM05D004051 ORTHO05D004480 8.8e-09 63.5 82 43.9
Sed0015186 Sechium edule HOM05D004051 ORTHO05D004480 1.1e-08 63.2 81 51.9
Hund11389 Selenicereus undatus HOM05D004051 ORTHO05D004480 1.1e-08 63.2 79 46.8
COL.COLO4_03427 Corchorus olitorius HOM05D004051 ORTHO05D004480 4.3e-08 61.2 155 33.5
Cfa016383 Carpinus fangiana HOM05D021618 ORTHO05D004480 9.7e-08 60.1 67 50.7
BcaC03g18002 Brassica carinata HOM05D016815 ORTHO05D020093 1.7e-07 59.3 62 51.6
Ah.12g052570 Amaranthus hybridus HOM05D000749 ORTHO05D005685 2.2e-07 58.9 81 51.9
Os06g0530200 Oryza sativa ssp. japonica HOM05D004051 ORTHO05D004480 3.7e-07 58.2 97 44.3
Zm00001eb277870 Zea mays HOM05D004051 ORTHO05D004480 8.2e-07 57.0 94 42.6
Aqoxy7G00101 Aquilegia oxysepala HOM05D002868 ORTHO05D023304 2.4e-06 55.5 60 51.7
Haze_00874 Corylus avellana HOM05D021618 ORTHO05D004480 5.3e-06 54.3 56 48.2
Haze_00184 Corylus avellana HOM05D021618 ORTHO05D004480 6.9e-06 53.9 56 48.2


User provided reference genes

Program Settings