Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01019293001 Vitis vinifera HOM05D000462 ORTHO05D005846 3.8e-114 414.8 211 100.0
Dinv43525 Davidia involucrata HOM05D000462 ORTHO05D005846 1.6e-40 170.2 162 51.9
Haze_03590 Corylus avellana HOM05D000462 ORTHO05D005846 2.7e-35 152.9 134 54.5
Hma1.2p1_0353F.1_g133250 Hydrangea macrophylla HOM05D000462 ORTHO05D005846 2.7e-35 152.9 132 52.3
TAR374G1078 Trochodendron aralioides HOM05D000462 ORTHO05D005846 4.6e-35 152.1 155 51.0
Cfa010675 Carpinus fangiana HOM05D000462 ORTHO05D005846 6.1e-35 151.8 134 53.0
Actinidia21593 Actinidia chinensis HOM05D000462 ORTHO05D005846 2.3e-34 149.8 170 47.6
Aqoxy3G02219 Aquilegia oxysepala HOM05D000462 ORTHO05D005846 2.3e-34 149.8 145 54.5
FAN03G2319 Fragaria x ananassa HOM05D000462 ORTHO05D005846 5.1e-34 148.7 150 49.3
FvH4_7g07720 Fragaria vesca HOM05D000462 ORTHO05D005846 1.1e-33 147.5 140 50.7
FAN10G1386 Fragaria x ananassa HOM05D000462 ORTHO05D005846 2.0e-33 146.7 140 50.7
MD07G1080300 Malus domestica HOM05D000462 ORTHO05D005846 2.0e-33 146.7 145 49.7
FvH4_6g35582 Fragaria vesca HOM05D000462 ORTHO05D005846 3.3e-33 146.0 140 51.4
FAN06G2574 Fragaria x ananassa HOM05D000462 ORTHO05D005846 3.3e-33 146.0 140 50.0
CSS0030224 Camellia sinensis var. sinensis HOM05D000462 ORTHO05D005846 4.3e-33 145.6 150 53.3
CSS0047566 Camellia sinensis var. sinensis HOM05D000462 ORTHO05D005846 9.7e-33 144.4 150 53.3
FAN14G2914 Fragaria x ananassa HOM05D000462 ORTHO05D005846 1.3e-32 144.1 140 50.7
Atru.chr2.1657 Acer truncatum HOM05D000462 ORTHO05D005846 2.8e-32 142.9 161 46.0
Hund26858 Selenicereus undatus HOM05D000462 ORTHO05D005846 8.2e-32 141.4 142 50.7
MD02G1233300 Malus domestica HOM05D000462 ORTHO05D005846 4.1e-31 139.0 141 49.6
CSS0023532 Camellia sinensis var. sinensis HOM05D000462 ORTHO05D005846 1.5e-30 137.1 149 49.0
RcHm_v2.0_Chr2g0147401 Rosa chinensis HOM05D000462 ORTHO05D005846 1.5e-30 137.1 146 44.5
RcHm_v2.0_Chr2g0147411 Rosa chinensis HOM05D000462 ORTHO05D005846 4.5e-30 135.6 133 52.6
FvH4_6g35581 Fragaria vesca HOM05D000462 ORTHO05D005846 1.0e-29 134.4 139 44.6
RcHm_v2.0_Chr1g0342371 Rosa chinensis HOM05D000462 ORTHO05D005846 1.0e-29 134.4 128 50.0
Sc02g0004850 Simmondsia chinensis HOM05D000462 ORTHO05D005846 1.3e-29 134.0 107 58.9
MELO3C006216.2 Cucumis melo HOM05D000462 ORTHO05D005846 1.7e-29 133.7 144 48.6
ClCG05G002510 Citrullus lanatus HOM05D000462 ORTHO05D005846 2.9e-29 132.9 152 47.4
Prupe.2G100300 Prunus persica HOM05D000462 ORTHO05D005846 5.0e-29 132.1 138 47.1
Prupe.2G104700 Prunus persica HOM05D000462 ORTHO05D005846 5.0e-29 132.1 141 47.5
Rhsim07G0047200 Rhododendron simsii HOM05D000462 ORTHO05D005846 2.5e-28 129.8 162 43.8
Rhsim07G0047100 Rhododendron simsii HOM05D000462 ORTHO05D005846 3.2e-28 129.4 152 45.4
Sed0002685 Sechium edule HOM05D000462 ORTHO05D005846 3.2e-28 129.4 145 50.3
Sed0009318 Sechium edule HOM05D000462 ORTHO05D005846 4.2e-28 129.0 143 49.7
CsaV3_3G009950 Cucumis sativus L. HOM05D000462 ORTHO05D005846 7.2e-28 128.3 144 47.2
CiPaw.13G054400 Carya illinoinensis HOM05D000462 ORTHO05D005846 1.2e-27 127.5 143 47.6
AUR62031622 Chenopodium quinoa HOM05D000462 ORTHO05D005846 2.7e-27 126.3 131 44.3
AUR62020515 Chenopodium quinoa HOM05D000462 ORTHO05D005846 3.6e-27 125.9 131 44.3
PGR042G2077 Punica granatum HOM05D000462 ORTHO05D005846 4.7e-27 125.6 142 44.4
Eucgr.E01753 Eucalyptus grandis HOM05D000462 ORTHO05D005846 6.1e-27 125.2 129 46.5
PSO782G4146 Papaver somniferum HOM05D000462 ORTHO05D005846 2.3e-26 123.2 150 45.3
RcHm_v2.0_Chr1g0342401 Rosa chinensis HOM05D000462 ORTHO05D005846 2.3e-26 123.2 144 43.1
Prupe.2G104300 Prunus persica HOM05D000462 ORTHO05D005846 3.0e-26 122.9 148 43.2
Aqoxy7G00268 Aquilegia oxysepala HOM05D000462 ORTHO05D005846 5.1e-26 122.1 172 40.1
EL10Ac4g07923 Beta vulgaris HOM05D000462 ORTHO05D005846 8.8e-26 121.3 131 42.7
Aqoxy3G00515 Aquilegia oxysepala HOM05D000462 ORTHO05D005846 1.5e-25 120.6 174 40.2
DCAR_029565 Daucus carota HOM05D000462 ORTHO05D005846 3.3e-25 119.4 130 48.5
Nn3g19417 Nelumbo nucifera HOM05D000462 ORTHO05D005846 3.3e-25 119.4 159 40.3
PSO017G2480 Papaver somniferum HOM05D000462 ORTHO05D005846 3.3e-25 119.4 149 42.3
ClCG05G011530 Citrullus lanatus HOM05D000462 ORTHO05D005846 4.4e-25 119.0 129 46.5
Migut.N01674 Erythranthe guttata HOM05D000462 ORTHO05D005846 4.4e-25 119.0 151 45.0
Zm00001eb421100 Zea mays HOM05D000462 ORTHO05D005846 4.4e-25 119.0 123 47.2
PSO063G2746 Papaver somniferum HOM05D000462 ORTHO05D005846 5.7e-25 118.6 150 44.0
RcHm_v2.0_Chr1g0342491 Rosa chinensis HOM05D000462 ORTHO05D005846 5.7e-25 118.6 144 41.0
PGSC0003DMG400042622 Solanum tuberosum HOM05D000462 ORTHO05D005846 7.4e-25 118.2 134 44.8
Nn3g19412 Nelumbo nucifera HOM05D000462 ORTHO05D005846 2.2e-24 116.7 182 37.9
MSTRG.17069 Avicennia marina HOM05D000462 ORTHO05D005846 3.7e-24 115.9 154 41.6
EL10Ac4g07924 Beta vulgaris HOM05D000462 ORTHO05D005846 4.8e-24 115.5 142 41.5
Ciclev10033936m.g Citrus clementina HOM05D000462 ORTHO05D005846 4.8e-24 115.5 102 53.9
Cc08_g05580 Coffea canephora HOM05D000462 ORTHO05D005846 8.2e-24 114.8 166 39.8
Nn1g09754 Nelumbo nucifera HOM05D000462 ORTHO05D005846 8.2e-24 114.8 123 47.2
PSO478G1321 Papaver somniferum HOM05D000462 ORTHO05D005846 1.1e-23 114.4 149 41.6
Cc00_g12640 Coffea canephora HOM05D000462 ORTHO05D005846 3.1e-23 112.8 128 44.5
ECA240G2690 Erigeron canadensis HOM05D000462 ORTHO05D005846 3.1e-23 112.8 139 41.7
Migut.N01672 Erythranthe guttata HOM05D000462 ORTHO05D005846 3.1e-23 112.8 165 40.6
Nitab4.5_0003123g0040 Nicotiana tabacum HOM05D000462 ORTHO05D011162 3.1e-23 112.8 127 44.1
Solyc01g081400.3 Solanum lycopersicum HOM05D000462 ORTHO05D005846 5.3e-23 112.1 136 47.1
Sopen01g032970 Solanum pennellii HOM05D000462 ORTHO05D005846 5.3e-23 112.1 136 47.1
arahy.Tifrunner.gnm1.ann1.AX2FME Arachis hypogaea HOM05D000462 ORTHO05D005846 7.0e-23 111.7 156 43.6
Peaxi162Scf00907g00221 Petunia axillaris HOM05D000462 ORTHO05D005846 7.0e-23 111.7 122 47.5
Peaxi162Scf00245g00411 Petunia axillaris HOM05D000462 ORTHO05D005846 1.5e-22 110.5 148 41.9
arahy.Tifrunner.gnm1.ann1.L6NMZX Arachis hypogaea HOM05D000462 ORTHO05D005846 2.0e-22 110.2 136 45.6
FAN14G3081 Fragaria x ananassa HOM05D000462 ORTHO05D005846 2.0e-22 110.2 104 48.1
Medtr4g083390 Medicago truncatula HOM05D000462 ORTHO05D005846 2.6e-22 109.8 126 43.7
Migut.N01673 Erythranthe guttata HOM05D000462 ORTHO05D005846 4.5e-22 109.0 152 42.8
SalBow4G0191 Salvia bowleyana HOM05D009568 ORTHO05D011026 4.5e-22 109.0 131 42.0
CANSAT78G2521 Cannabis sativa HOM05D000462 ORTHO05D005846 1.0e-21 107.8 90 52.2
SalBow4G1864 Salvia bowleyana HOM05D000462 ORTHO05D005846 1.0e-21 107.8 161 42.2
SalBow4G3150 Salvia bowleyana HOM05D000462 ORTHO05D005846 1.0e-21 107.8 161 42.2
Lsat_1_v5_gn_5_59060 Lactuca sativa HOM05D000462 ORTHO05D005846 1.7e-21 107.1 128 44.5
SalBow4G0706 Salvia bowleyana HOM05D009568 ORTHO05D011026 1.7e-21 107.1 121 43.0
Cc08_g05560 Coffea canephora HOM05D000462 ORTHO05D005846 2.2e-21 106.7 167 38.9
vmacro13593 Vaccinium macrocarpon HOM05D000462 ORTHO05D005846 2.2e-21 106.7 138 44.9
PGSC0003DMG400001798 Solanum tuberosum HOM05D000462 ORTHO05D005846 5.0e-21 105.5 163 42.9
PGSC0003DMG400020979 Solanum tuberosum HOM05D000462 ORTHO05D005846 5.0e-21 105.5 163 42.9
DCAR_029566 Daucus carota HOM05D000462 ORTHO05D005846 6.5e-21 105.1 132 44.7
Sopen01g026530 Solanum pennellii HOM05D000462 ORTHO05D005846 8.5e-21 104.8 125 44.0
arahy.Tifrunner.gnm1.ann1.ES60GW Arachis hypogaea HOM05D000462 ORTHO05D005846 1.1e-20 104.4 116 43.1
arahy.Tifrunner.gnm1.ann1.XCU387 Arachis hypogaea HOM05D000462 ORTHO05D005846 1.5e-20 104.0 129 41.1
Os04g0386900 Oryza sativa ssp. japonica HOM05D000462 ORTHO05D005846 1.9e-20 103.6 126 43.7
SalBow4G2124 Salvia bowleyana HOM05D000462 ORTHO05D005846 2.5e-20 103.2 163 39.3
arahy.Tifrunner.gnm1.ann1.62DZ2D Arachis hypogaea HOM05D000462 ORTHO05D005846 3.2e-20 102.8 121 46.3
Nitab4.5_0000792g0060 Nicotiana tabacum HOM05D000462 ORTHO05D005846 4.2e-20 102.4 113 47.8
Lsat_1_v5_gn_7_33120 Lactuca sativa HOM05D000462 ORTHO05D005846 1.2e-19 100.9 134 43.3
SalBow4G2827 Salvia bowleyana HOM05D000462 ORTHO05D005846 1.2e-19 100.9 163 38.7
AUR62020518 Chenopodium quinoa HOM05D000462 ORTHO05D005846 1.6e-19 100.5 125 41.6
Psat7g132920 Pisum sativum HOM05D000462 ORTHO05D005846 2.7e-19 99.8 121 46.3
RcHm_v2.0_Chr1g0342511 Rosa chinensis HOM05D000462 ORTHO05D005846 2.7e-19 99.8 114 44.7
AUR62015684 Chenopodium quinoa HOM05D000462 ORTHO05D005846 4.7e-19 99.0 125 41.6
Phvul.002G100800 Phaseolus vulgaris HOM05D000462 ORTHO05D005846 4.7e-19 99.0 120 40.8
Peaxi162Scf00907g00226 Petunia axillaris HOM05D000462 ORTHO05D005846 6.1e-19 98.6 115 44.3
Cc08_g05570 Coffea canephora HOM05D000462 ORTHO05D005846 8.0e-19 98.2 119 44.5
Lalb_Chr09g0328911 Lupinus albus HOM05D000462 ORTHO05D005846 1.0e-18 97.8 151 37.1
Solyc01g150140.1 Solanum lycopersicum HOM05D000462 ORTHO05D005846 1.0e-18 97.8 123 41.5
CAN.G992.17 Capsicum annuum HOM05D000462 ORTHO05D005846 1.4e-18 97.4 113 46.0
AUR62031619 Chenopodium quinoa HOM05D000462 ORTHO05D005846 1.4e-18 97.4 125 40.8
Aqoxy2G03796 Aquilegia oxysepala HOM05D000462 ORTHO05D005846 1.8e-18 97.1 106 44.3
VMungo0251G1006 Vigna mungo HOM05D000462 ORTHO05D005846 3.0e-18 96.3 119 40.3
DCAR_029563 Daucus carota HOM05D000462 ORTHO05D005846 4.0e-18 95.9 127 41.7
ECA236G1772 Erigeron canadensis HOM05D000462 ORTHO05D005846 4.0e-18 95.9 152 38.8
HanXRQChr13g0411631 Helianthus annuus HOM05D000462 ORTHO05D005846 6.7e-18 95.1 151 38.4
Nitab4.5_0000050g0130 Nicotiana tabacum HOM05D000462 ORTHO05D005846 6.7e-18 95.1 123 39.0
TPR.G34026 Trifolium pratense HOM05D000462 ORTHO05D005846 6.7e-18 95.1 114 47.4
HPP92_014959 Vanilla planifolia HOM05D000462 ORTHO05D005846 6.7e-18 95.1 118 41.5
FAN06G0093 Fragaria x ananassa HOM05D000462 ORTHO05D005846 4.4e-17 92.4 108 42.6
Cpa.g.sc73.65 Carica papaya HOM05D000462 ORTHO05D005846 3.7e-16 89.4 96 41.7
CAN.G206.135 Capsicum annuum HOM05D000462 ORTHO05D005846 6.3e-16 88.6 143 37.1
Oeu039097.1 Olea europaea HOM05D000462 ORTHO05D005846 2.4e-15 86.7 122 39.3
unitig_26.g8840 Utricularia gibba HOM05D000462 ORTHO05D005846 4.1e-15 85.9 156 34.0
Nitab4.5_0006461g0020 Nicotiana tabacum HOM05D000462 ORTHO05D005846 7.0e-15 85.1 82 50.0
Oeu013594.1 Olea europaea HOM05D000462 ORTHO05D005846 7.0e-15 85.1 116 39.7
Solyc07g017470.3 Solanum lycopersicum HOM05D000462 ORTHO05D005846 9.1e-15 84.7 95 41.1
AUR62015689 Chenopodium quinoa HOM05D000462 ORTHO05D005846 1.2e-14 84.3 105 37.1
HanXRQChr01g0021801 Helianthus annuus HOM05D000462 ORTHO05D005846 2.6e-14 83.2 100 41.0
CAN.G992.16 Capsicum annuum HOM05D000462 ORTHO05D005846 7.7e-14 81.6 96 44.8
FAN10G1699 Fragaria x ananassa HOM05D000462 ORTHO05D005846 7.7e-14 81.6 72 50.0
unitig_749.g14241 Utricularia gibba HOM05D000462 ORTHO05D005846 2.2e-13 80.1 175 33.1
Ca_18787_v3 Cicer arietinum L. HOM05D000462 ORTHO05D005846 3.8e-13 79.3 93 50.5
Os06g0112300 Oryza sativa ssp. japonica HOM05D000462 ORTHO05D005846 3.8e-13 79.3 123 39.8
Glyma.07G224100 Glycine max HOM05D000462 ORTHO05D005846 1.1e-12 77.8 80 45.0
AUR62031621 Chenopodium quinoa HOM05D000462 ORTHO05D005846 2.5e-12 76.6 105 36.2
Aqoxy5G02385 Aquilegia oxysepala HOM05D024176 ORTHO05D005846 2.1e-11 73.6 112 38.4
Peaxi162Scf00104g00047 Petunia axillaris HOM05D000462 ORTHO05D005846 4.7e-11 72.4 99 38.4
Peaxi162Scf01016g00003 Petunia axillaris HOM05D000462 ORTHO05D005846 6.1e-11 72.0 105 37.1
unitig_750.g28427 Utricularia gibba HOM05D000462 ORTHO05D005846 8.0e-11 71.6 182 28.0
Cpa.g.c42681 Carica papaya HOM05D000462 ORTHO05D005846 4.0e-10 69.3 65 49.2
CDE03G0429 Ceratophyllum demersum HOM05D000462 ORTHO05D005846 8.8e-10 68.2 124 33.1
FAN28G0564 Fragaria x ananassa HOM05D000395 ORTHO05D000088 2.0e-09 67.0 91 42.9
Aqoxy5G02746 Aquilegia oxysepala HOM05D024176 ORTHO05D005846 2.6e-09 66.6 100 39.0
FAN26G1384 Fragaria x ananassa HOM05D000395 ORTHO05D000088 3.4e-09 66.2 91 41.8
FvH4_1g14670 Fragaria vesca HOM05D000395 ORTHO05D000088 4.4e-09 65.9 91 41.8
FAN19G3035 Fragaria x ananassa HOM05D000395 ORTHO05D000088 4.4e-09 65.9 91 41.8
SGA_v2.0_scaffold98G29378 Striga asiatica HOM05D000462 ORTHO05D005846 7.5e-09 65.1 112 33.9
FvH4_7g07710 Fragaria vesca HOM05D000462 ORTHO05D005846 1.3e-08 64.3 132 31.1
PSO339G0204 Papaver somniferum HOM05D000395 ORTHO05D000088 2.2e-08 63.5 99 33.3
SGA_v2.0_scaffold4G02224 Striga asiatica HOM05D000462 ORTHO05D005846 4.8e-08 62.4 48 58.3
Aqoxy3G01422 Aquilegia oxysepala HOM05D024176 ORTHO05D005846 8.3e-08 61.6 86 39.5
Manes.07G115300 Manihot esculenta HOM05D000395 ORTHO05D000088 8.3e-08 61.6 144 28.5
PSO384G0211 Papaver somniferum HOM05D000395 ORTHO05D000088 1.8e-07 60.5 110 33.6
Lj1g0017480 Lotus japonicus HOM05D000395 ORTHO05D000088 4.1e-07 59.3 57 45.6
Nitab4.5_0003568g0030 Nicotiana tabacum HOM05D008575 ORTHO05D011162 4.1e-07 59.3 95 33.7
Lj2A600T56 Lonicera japonica HOM05D000395 ORTHO05D000088 5.4e-07 58.9 140 32.1
Duzib264G0510 Durio zibethinus HOM05D000395 ORTHO05D000088 7.0e-07 58.5 78 41.0
RcHm_v2.0_Chr2g0103521 Rosa chinensis HOM05D000395 ORTHO05D000088 7.0e-07 58.5 90 37.8
SEGI_02922 Sequoiadendron giganteum HOM05D000823 ORTHO05D005846 7.0e-07 58.5 71 42.3
PSO384G3645 Papaver somniferum HOM05D000395 ORTHO05D000088 1.2e-06 57.8 124 29.0
Nitab4.5_0004193g0050 Nicotiana tabacum HOM05D008575 ORTHO05D011162 2.0e-06 57.0 95 33.7
Cpa.g.sc132.62 Carica papaya HOM05D000395 ORTHO05D000088 2.7e-06 56.6 121 33.9
CiPaw.01G027300 Carya illinoinensis HOM05D000395 ORTHO05D000088 2.7e-06 56.6 97 35.1
Sed0008220 Sechium edule HOM05D000395 ORTHO05D000088 2.7e-06 56.6 142 31.0
FAN26G3456 Fragaria x ananassa HOM05D000395 ORTHO05D000088 3.5e-06 56.2 142 29.6
TPR.G34039 Trifolium pratense HOM05D000462 ORTHO05D005846 3.5e-06 56.2 87 36.8
TWI09G0933 Tripterygium wilfordii HOM05D000395 ORTHO05D000088 3.5e-06 56.2 127 35.4
Phvul.007G019500 Phaseolus vulgaris HOM05D000395 ORTHO05D000088 4.5e-06 55.8 171 28.7
Solyc01g060370.2 Solanum lycopersicum HOM05D000462 ORTHO05D005846 7.7e-06 55.1 55 45.5


User provided reference genes

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