Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01019086001 Vitis vinifera HOM05D007881 ORTHO05D009922 2.1e-32 141.7 71 100.0
CiPaw.07G080900 Carya illinoinensis HOM05D007881 ORTHO05D009922 1.4e-15 85.9 68 63.2
Ciclev10033256m.g Citrus clementina HOM05D007881 ORTHO05D009922 2.3e-15 85.1 69 59.4
Manes.12G005400 Manihot esculenta HOM05D007881 ORTHO05D009922 5.2e-15 84.0 71 60.6
Atru.chr6.1889 Acer truncatum HOM05D007881 ORTHO05D009922 1.5e-14 82.4 73 61.6
Sabra15G0148100 Salix brachista HOM05D007881 ORTHO05D009922 4.4e-14 80.9 68 61.8
Gohir.A05G392600 Gossypium hirsutum HOM05D007881 ORTHO05D009922 9.9e-14 79.7 70 64.3
Gohir.D04G024500 Gossypium hirsutum HOM05D007881 ORTHO05D009922 9.9e-14 79.7 70 64.3
Gorai.012G027000 Gossypium raimondii HOM05D007881 ORTHO05D009922 9.9e-14 79.7 70 64.3
Potri.015G136500 Populus trichocarpa HOM05D007881 ORTHO05D009922 4.9e-13 77.4 70 61.4
COL.COLO4_38031 Corchorus olitorius HOM05D007881 ORTHO05D009922 1.1e-12 76.3 71 59.2
Thecc.05G194300 Theobroma cacao HOM05D007881 ORTHO05D009922 1.1e-12 76.3 70 62.9
Prupe.6G361800 Prunus persica HOM05D007881 ORTHO05D009922 1.4e-12 75.9 76 48.7
CARHR005530 Cardamine hirsuta HOM05D007881 ORTHO05D009922 1.9e-12 75.5 75 54.7
QL12p018644 Quercus lobata HOM05D007881 ORTHO05D009922 2.4e-12 75.1 73 54.8
Sp1g04830 Schrenkiella parvula HOM05D007881 ORTHO05D009922 4.1e-12 74.3 68 58.8
MD04G1245200 Malus domestica HOM05D007881 ORTHO05D009922 7.1e-12 73.6 76 47.4
AL1G15960 Arabidopsis lyrata HOM05D007881 ORTHO05D009922 9.2e-12 73.2 71 54.9
TWI36G1222 Tripterygium wilfordii HOM05D007881 ORTHO05D009922 9.2e-12 73.2 66 59.1
Nitab4.5_0000083g0100 Nicotiana tabacum HOM05D007881 ORTHO05D009922 1.2e-11 72.8 73 53.4
Carub.0001s0535 Capsella rubella HOM05D007881 ORTHO05D009922 1.6e-11 72.4 71 53.5
Potri.012G134200 Populus trichocarpa HOM05D007881 ORTHO05D009922 2.1e-11 72.0 79 51.9
AT1G06010 Arabidopsis thaliana HOM05D007881 ORTHO05D009922 2.7e-11 71.6 76 51.3
Cpa.g.sc9.142 Carica papaya HOM05D007881 ORTHO05D009922 3.5e-11 71.2 70 52.9
PGR119G1449 Punica granatum HOM05D007881 ORTHO05D009922 7.8e-11 70.1 63 58.7
THA.LOC109117253 Tarenaya hassleriana HOM05D007881 ORTHO05D009922 1.7e-10 68.9 78 47.4
arahy.Tifrunner.gnm1.ann1.FFCC7D Arachis hypogaea HOM05D007881 ORTHO05D009922 3.9e-10 67.8 69 43.5
arahy.Tifrunner.gnm1.ann1.X7CW9T Arachis hypogaea HOM05D007881 ORTHO05D009922 5.1e-10 67.4 69 43.5
MD12G1086700 Malus domestica HOM05D007881 ORTHO05D009922 5.1e-10 67.4 72 48.6
Solyc04g056425.1 Solanum lycopersicum HOM05D007881 ORTHO05D009922 5.1e-10 67.4 73 50.7
Eucgr.B01417 Eucalyptus grandis HOM05D007881 ORTHO05D009922 6.6e-10 67.0 73 49.3
BraA08t35524Z Brassica rapa HOM05D007881 ORTHO05D009922 8.6e-10 66.6 69 55.1
CAN.G217.11 Capsicum annuum HOM05D007881 ORTHO05D009922 8.6e-10 66.6 57 63.2
MELO3C010052.2 Cucumis melo HOM05D007881 ORTHO05D009922 8.6e-10 66.6 70 48.6
vmacro10404 Vaccinium macrocarpon HOM05D007881 ORTHO05D009922 8.6e-10 66.6 70 50.0
ClCG03G010640 Citrullus lanatus HOM05D007881 ORTHO05D009922 1.1e-09 66.2 68 47.1
Nitab4.5_0001435g0080 Nicotiana tabacum HOM05D007881 ORTHO05D009922 1.1e-09 66.2 73 46.6
Oeu034791.1 Olea europaea HOM05D007881 ORTHO05D009922 1.1e-09 66.2 71 49.3
Peaxi162Scf00048g00055 Petunia axillaris HOM05D007881 ORTHO05D009922 1.9e-09 65.5 70 50.0
TAR362G1041 Trochodendron aralioides HOM05D007881 ORTHO05D009922 1.9e-09 65.5 71 47.9
BcaC07g42091 Brassica carinata HOM05D007881 ORTHO05D009922 2.5e-09 65.1 64 57.8
Thhalv10009243m.g Eutrema salsugineum HOM05D007881 ORTHO05D009922 3.3e-09 64.7 63 54.0
Sopen04g025320 Solanum pennellii HOM05D000039 ORTHO05D000366 4.3e-09 64.3 52 63.5
A08p36200 Brassica napus HOM05D007881 ORTHO05D009922 5.6e-09 63.9 66 54.5
Aqoxy3G03631 Aquilegia oxysepala HOM05D007881 ORTHO05D009922 7.3e-09 63.5 39 74.4
BcaC07g36818 Brassica carinata HOM05D007881 ORTHO05D009922 9.5e-09 63.2 68 50.0
BolC8t47025H Brassica oleracea HOM05D007881 ORTHO05D009922 1.2e-08 62.8 68 50.0
CsaV3_1G044490 Cucumis sativus L. HOM05D007881 ORTHO05D009922 2.1e-08 62.0 46 63.0
Actinidia03288 Actinidia chinensis HOM05D007881 ORTHO05D009922 2.8e-08 61.6 53 58.5
Cc09_g03690 Coffea canephora HOM05D007881 ORTHO05D009922 2.8e-08 61.6 62 54.8
DCAR_007684 Daucus carota HOM05D007881 ORTHO05D009922 2.8e-08 61.6 73 45.2
Lsat_1_v5_gn_1_127981 Lactuca sativa HOM05D007881 ORTHO05D009922 2.8e-08 61.6 69 49.3
CSS0004298 Camellia sinensis var. sinensis HOM05D007881 ORTHO05D009922 3.6e-08 61.2 54 53.7
AUR62000305 Chenopodium quinoa HOM05D007881 ORTHO05D009922 3.6e-08 61.2 74 41.9
FvH4_6g00460 Fragaria vesca HOM05D007881 ORTHO05D009922 4.7e-08 60.8 60 45.0
SalBow1G5699 Salvia bowleyana HOM05D007881 ORTHO05D009922 4.7e-08 60.8 45 66.7
Sed0019316 Sechium edule HOM05D007881 ORTHO05D009922 4.7e-08 60.8 36 75.0
Migut.F02122 Erythranthe guttata HOM05D007881 ORTHO05D009922 6.2e-08 60.5 52 53.8
Lalb_Chr25g0282841 Lupinus albus HOM05D007881 ORTHO05D009922 6.2e-08 60.5 69 44.9
Nn7g37671 Nelumbo nucifera HOM05D007881 ORTHO05D009922 1.4e-07 59.3 53 52.8
Glyma.11G151200 Glycine max HOM05D007881 ORTHO05D009922 1.8e-07 58.9 57 54.4
Medtr3g032520 Medicago truncatula HOM05D007881 ORTHO05D009922 1.8e-07 58.9 38 65.8
FAN09G3126 Fragaria x ananassa HOM05D007881 ORTHO05D009922 2.4e-07 58.5 60 43.3
Phvul.005G031800 Phaseolus vulgaris HOM05D007881 ORTHO05D009922 3.1e-07 58.2 60 53.3
Sc16g0010420 Simmondsia chinensis HOM05D003813 ORTHO05D004557 4.0e-07 57.8 67 40.3
A09p67190 Brassica napus HOM05D007881 ORTHO05D009922 5.2e-07 57.4 38 68.4
C08p51460 Brassica napus HOM05D000559 ORTHO05D009922 5.2e-07 57.4 38 68.4
BolC8t52672H Brassica oleracea HOM05D007881 ORTHO05D009922 5.2e-07 57.4 38 68.4
FAN02G0717 Fragaria x ananassa HOM05D007881 ORTHO05D009922 5.2e-07 57.4 53 50.9
ATR0215G006 Amborella trichopoda HOM05D007881 ORTHO05D009922 6.8e-07 57.0 61 45.9
RcHm_v2.0_Chr3g0447831 Rosa chinensis HOM05D007881 ORTHO05D009922 6.8e-07 57.0 74 40.5
arahy.Tifrunner.gnm1.ann1.FG2V1D Arachis hypogaea HOM05D007881 ORTHO05D009922 8.9e-07 56.6 49 53.1
CDE02G1687 Ceratophyllum demersum HOM05D007881 ORTHO05D009922 8.9e-07 56.6 69 44.9
ECA232G2986 Erigeron canadensis HOM05D005940 ORTHO05D007027 1.2e-06 56.2 45 55.6
Lj3g0003474 Lotus japonicus HOM05D007881 ORTHO05D009922 1.2e-06 56.2 59 47.5
HPP92_003553 Vanilla planifolia HOM05D007881 ORTHO05D009922 1.5e-06 55.8 61 50.8
AUR62006650 Chenopodium quinoa HOM05D007881 ORTHO05D009922 2.0e-06 55.5 44 56.8
HanXRQChr16g0510911 Helianthus annuus HOM05D007881 ORTHO05D009922 2.0e-06 55.5 66 43.9
arahy.Tifrunner.gnm1.ann1.4W1HTH Arachis hypogaea HOM05D007881 ORTHO05D009922 4.4e-06 54.3 69 39.1
EL10Ac4g09960 Beta vulgaris HOM05D007881 ORTHO05D009922 9.9e-06 53.1 43 53.5
Psat5g211080 Pisum sativum HOM05D007881 ORTHO05D009922 9.9e-06 53.1 70 44.3


User provided reference genes

Program Settings