Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01018995001 Vitis vinifera HOM05D004086 ORTHO05D004641 0.0e+00 1366.3 689 100.0
TAR628G1622 Trochodendron aralioides HOM05D004086 ORTHO05D004641 8.2e-214 747.7 696 59.9
Actinidia36545 Actinidia chinensis HOM05D004086 ORTHO05D004641 1.0e-208 730.7 695 57.8
CSS0048181 Camellia sinensis var. sinensis HOM05D004086 ORTHO05D004641 3.3e-207 725.7 706 56.5
CSS0022456 Camellia sinensis var. sinensis HOM05D004086 ORTHO05D004641 1.6e-206 723.4 706 56.4
Hma1.2p1_0400F.1_g144650 Hydrangea macrophylla HOM05D004086 ORTHO05D004641 1.8e-205 719.9 700 57.1
Dinv39963 Davidia involucrata HOM05D004086 ORTHO05D004641 1.8e-200 703.4 706 56.1
TWI09G1017 Tripterygium wilfordii HOM05D004086 ORTHO05D004641 8.8e-200 701.0 709 55.3
Manes.07G068600 Manihot esculenta HOM05D004086 ORTHO05D004641 4.2e-194 682.2 727 53.2
Thecc.01G039100 Theobroma cacao HOM05D004086 ORTHO05D004641 4.7e-193 678.7 715 54.8
Ciclev10025048m.g Citrus clementina HOM05D004086 ORTHO05D004641 3.3e-191 672.5 712 53.7
MELO3C017544.2 Cucumis melo HOM05D004086 ORTHO05D004641 7.4e-191 671.4 714 53.1
Duzib264G0994 Durio zibethinus HOM05D004086 ORTHO05D004641 1.3e-190 670.6 707 53.5
Actinidia12113 Actinidia chinensis HOM05D004086 ORTHO05D004641 4.5e-188 662.1 696 54.3
CANSAT01G2856 Cannabis sativa HOM05D004086 ORTHO05D004641 1.7e-187 660.2 707 52.6
CsaV3_4G005180 Cucumis sativus L. HOM05D004086 ORTHO05D004641 1.1e-186 657.5 713 52.5
Cc07_g09240 Coffea canephora HOM05D004086 ORTHO05D004641 2.7e-185 652.9 710 52.4
Potri.007G028600 Populus trichocarpa HOM05D004086 ORTHO05D004641 2.7e-185 652.9 720 51.4
Prupe.7G151600 Prunus persica HOM05D004086 ORTHO05D004641 8.2e-182 641.3 721 50.9
Gohir.D11G192200 Gossypium hirsutum HOM05D004086 ORTHO05D004641 3.1e-181 639.4 718 51.1
Gorai.007G205200 Gossypium raimondii HOM05D004086 ORTHO05D004641 7.0e-181 638.3 718 51.1
Gohir.A11G185700 Gossypium hirsutum HOM05D004086 ORTHO05D004641 2.7e-180 636.3 725 50.9
ClCG07G009030 Citrullus lanatus HOM05D004086 ORTHO05D004641 2.9e-179 632.9 715 51.2
MD02G1151400 Malus domestica HOM05D004086 ORTHO05D004641 3.8e-179 632.5 722 50.6
Sabra07G0024800 Salix brachista HOM05D004086 ORTHO05D004641 2.5e-178 629.8 735 50.1
vmacro07910 Vaccinium macrocarpon HOM05D004086 ORTHO05D004641 2.5e-178 629.8 723 52.1
Lj5A533G14 Lonicera japonica HOM05D004086 ORTHO05D004641 1.4e-176 624.0 675 51.1
MSTRG.23544 Avicennia marina HOM05D004086 ORTHO05D004641 4.0e-176 622.5 702 50.9
Gohir.D11G227980 Gossypium hirsutum HOM05D004086 ORTHO05D004641 2.0e-175 620.2 718 50.3
Sed0023254 Sechium edule HOM05D004086 ORTHO05D004641 2.6e-175 619.8 721 49.1
DCAR_025930 Daucus carota HOM05D004086 ORTHO05D004641 3.5e-172 609.4 706 49.9
RcHm_v2.0_Chr2g0102021 Rosa chinensis HOM05D004086 ORTHO05D004641 2.8e-169 599.7 726 48.5
FAN19G3131 Fragaria x ananassa HOM05D004086 ORTHO05D004641 4.5e-164 582.4 722 47.6
QL06p045466 Quercus lobata HOM05D004086 ORTHO05D004641 1.0e-163 581.3 692 51.3
CiPaw.02G015600 Carya illinoinensis HOM05D004086 ORTHO05D004641 2.9e-163 579.7 698 49.0
FAN26G0470 Fragaria x ananassa HOM05D004086 ORTHO05D004641 8.6e-163 578.2 724 47.8
FvH4_1g13700 Fragaria vesca HOM05D004086 ORTHO05D004641 1.9e-162 577.0 722 47.5
Nn5g29538 Nelumbo nucifera HOM05D004086 ORTHO05D004641 5.6e-162 575.5 549 57.9
FAN28G1508 Fragaria x ananassa HOM05D004086 ORTHO05D004641 2.8e-161 573.2 733 47.7
EL10Ac7g17738 Beta vulgaris HOM05D004086 ORTHO05D004641 6.1e-161 572.0 694 49.3
Rhsim03G0093700 Rhododendron simsii HOM05D004086 ORTHO05D004641 6.1e-161 572.0 738 48.6
Sopen08g027080 Solanum pennellii HOM05D004086 ORTHO05D004641 8.0e-161 571.6 693 49.4
COL.COLO4_22111 Corchorus olitorius HOM05D004086 ORTHO05D004641 1.8e-160 570.5 695 48.8
Solyc08g078600.3 Solanum lycopersicum HOM05D004086 ORTHO05D004641 2.3e-160 570.1 693 49.2
Gohir.D11G227900 Gossypium hirsutum HOM05D004086 ORTHO05D004641 2.0e-159 567.0 656 49.1
Nitab4.5_0008457g0010 Nicotiana tabacum HOM05D004086 ORTHO05D004641 7.5e-159 565.1 698 47.9
THA.LOC104819797 Tarenaya hassleriana HOM05D004086 ORTHO05D004641 2.2e-158 563.5 709 47.7
FAN23G2825 Fragaria x ananassa HOM05D004086 ORTHO05D004641 4.9e-158 562.4 745 47.0
Hund05506 Selenicereus undatus HOM05D004086 ORTHO05D004641 1.1e-157 561.2 683 48.8
Glyma.11G009900 Glycine max HOM05D004086 ORTHO05D004641 3.2e-157 559.7 711 46.6
PGSC0003DMG400004762 Solanum tuberosum HOM05D004086 ORTHO05D004641 7.0e-157 558.5 697 48.2
Lalb_Chr20g0123501 Lupinus albus HOM05D004086 ORTHO05D004641 7.8e-156 555.1 702 47.2
ECA232G4057 Erigeron canadensis HOM05D004086 ORTHO05D001499 1.9e-154 550.4 696 45.5
Eucgr.H01260 Eucalyptus grandis HOM05D004086 ORTHO05D004641 2.1e-153 547.0 632 49.5
VMungo1215G0116 Vigna mungo HOM05D004086 ORTHO05D004641 3.6e-153 546.2 718 44.7
Peaxi162Scf00515g00225 Petunia axillaris HOM05D004086 ORTHO05D004641 2.3e-152 543.5 696 47.7
Medtr5g019810 Medicago truncatula HOM05D004086 ORTHO05D004641 4.9e-150 535.8 710 44.9
Ca_00390_v3 Cicer arietinum L. HOM05D004086 ORTHO05D004641 3.2e-149 533.1 728 42.9
Nitab4.5_0010593g0010 Nicotiana tabacum HOM05D004086 ORTHO05D004641 9.2e-149 531.6 772 43.9
CAN.G1058.29 Capsicum annuum HOM05D004086 ORTHO05D004641 1.6e-148 530.8 699 46.5
Sp2g19840 Schrenkiella parvula HOM05D004086 ORTHO05D004641 3.5e-148 529.6 717 45.2
Lj5g0019705 Lotus japonicus HOM05D004086 ORTHO05D004641 1.1e-146 524.6 696 44.7
Phvul.002G040400 Phaseolus vulgaris HOM05D004086 ORTHO05D004641 4.3e-146 522.7 714 44.4
Ah.15g091580 Amaranthus hybridus HOM05D004086 ORTHO05D004641 7.3e-146 521.9 678 46.0
TPR.G18816 Trifolium pratense HOM05D004086 ORTHO05D004641 1.6e-145 520.8 715 42.8
Sopen02g030230 Solanum pennellii HOM05D004086 ORTHO05D004641 3.6e-145 519.6 694 45.8
Migut.H00181 Erythranthe guttata HOM05D004086 ORTHO05D004641 6.2e-145 518.8 702 45.9
Solyc02g085560.3 Solanum lycopersicum HOM05D004086 ORTHO05D004641 3.4e-143 513.1 694 45.2
A06p38290 Brassica napus HOM05D004086 ORTHO05D004641 7.5e-143 511.9 725 44.7
BraA06t26744Z Brassica rapa HOM05D004086 ORTHO05D004641 9.8e-143 511.5 725 44.7
BolC7t44527H Brassica oleracea HOM05D004086 ORTHO05D004641 1.7e-142 510.8 728 44.4
AUR62008836 Chenopodium quinoa HOM05D004086 ORTHO05D004641 2.2e-142 510.4 670 49.0
PSO675G7346 Papaver somniferum HOM05D004086 ORTHO05D004641 3.7e-142 509.6 701 45.1
C07p39950 Brassica napus HOM05D004086 ORTHO05D004641 1.9e-141 507.3 720 44.0
HanXRQChr09g0262111 Helianthus annuus HOM05D004086 ORTHO05D004641 1.6e-140 504.2 694 42.7
Thhalv10003751m.g Eutrema salsugineum HOM05D004086 ORTHO05D004641 1.0e-139 501.5 706 43.8
AUR62025406 Chenopodium quinoa HOM05D004086 ORTHO05D004641 3.9e-139 499.6 645 48.1
PSO541G3560 Papaver somniferum HOM05D004086 ORTHO05D004641 1.2e-137 494.6 694 44.5
AT5G49530 Arabidopsis thaliana HOM05D004086 ORTHO05D004641 1.1e-136 491.5 721 43.6
ECA238G3830 Erigeron canadensis HOM05D004086 ORTHO05D004641 1.1e-136 491.5 655 44.3
CARHR287960 Cardamine hirsuta HOM05D004086 ORTHO05D004641 3.1e-136 490.0 710 43.2
Carub.0008s0941 Capsella rubella HOM05D004086 ORTHO05D004641 3.4e-135 486.5 711 43.5
Oeu053005.1 Olea europaea HOM05D004086 ORTHO05D004641 4.1e-133 479.6 572 49.3
arahy.Tifrunner.gnm1.ann1.4T6GLU Arachis hypogaea HOM05D004086 ORTHO05D004641 5.4e-133 479.2 718 41.9
arahy.Tifrunner.gnm1.ann1.FS5W7P Arachis hypogaea HOM05D004086 ORTHO05D004641 1.5e-130 471.1 714 41.5
Psat2g160960 Pisum sativum HOM05D004086 ORTHO05D004641 1.5e-130 471.1 663 42.8
DCAR_023357 Daucus carota HOM05D004086 ORTHO05D004641 4.7e-129 466.1 693 43.1
Aqoxy6G01048 Aquilegia oxysepala HOM05D004086 ORTHO05D004641 6.2e-129 465.7 714 43.0
CAN.G358.119 Capsicum annuum HOM05D004086 ORTHO05D004641 5.2e-128 462.6 711 41.4
Atru.chr3.545 Acer truncatum HOM05D004086 ORTHO05D004641 9.9e-127 458.4 571 48.2
AL8G23320 Arabidopsis lyrata HOM05D004086 ORTHO05D004641 9.9e-127 458.4 709 42.0
Lsat_1_v5_gn_4_150860 Lactuca sativa HOM05D004086 ORTHO05D004641 1.7e-126 457.6 687 42.1
Aa31LG11G8330 Aethionema arabicum HOM05D004086 ORTHO05D004641 1.1e-125 454.9 720 41.4
COL.COLO4_14865 Corchorus olitorius HOM05D004086 ORTHO05D004641 1.3e-113 414.8 500 48.6
Haze_02099 Corylus avellana HOM05D004086 ORTHO05D004641 1.9e-109 401.0 857 35.6
SpUn0021_0010 Schrenkiella parvula HOM05D004086 ORTHO05D004641 9.3e-109 398.7 541 45.5
Nitab4.5_0001279g0090 Nicotiana tabacum HOM05D004086 ORTHO05D004641 5.6e-106 389.4 478 47.3
Haze_15127 Corylus avellana HOM05D004086 ORTHO05D004641 4.8e-105 386.3 484 48.1
Ah.15g091670 Amaranthus hybridus HOM05D004086 ORTHO05D004641 4.0e-104 383.3 461 46.2
Medtr5g026040 Medicago truncatula HOM05D004086 ORTHO05D004641 2.6e-103 380.6 515 43.5
ATR0064G058 Amborella trichopoda HOM05D004086 ORTHO05D004641 3.4e-103 380.2 757 36.2
Cpa.g.sc353.3 Carica papaya HOM05D004086 ORTHO05D004641 5.5e-101 372.9 478 48.1
AagrBONN_evm.TU.Sc2ySwM_344.3508 Anthoceros agrestis HOM05D004086 ORTHO05D004641 3.5e-100 370.2 738 36.3
Mapoly0113s0019 Marchantia polymorpha HOM05D004086 ORTHO05D004641 3.3e-98 363.6 726 36.2
Sc17g0002710 Simmondsia chinensis HOM05D004086 ORTHO05D004641 7.4e-98 362.5 375 52.3
SMO203G0104 Selaginella moellendorffii HOM05D004086 ORTHO05D004641 6.3e-97 359.4 649 36.5
unitig_52.g17585 Utricularia gibba HOM05D004086 ORTHO05D004641 8.2e-97 359.0 617 38.9
CBR_g22032 Chara braunii HOM05D004086 ORTHO05D004641 1.8e-96 357.8 664 37.2
CBR_g50911 Chara braunii HOM05D004086 ORTHO05D004641 2.2e-94 350.9 670 36.7
CBR_g50913 Chara braunii HOM05D004086 ORTHO05D004641 2.2e-94 350.9 670 36.7
TPR.G28496 Trifolium pratense HOM05D004086 ORTHO05D004641 1.1e-93 348.6 500 41.6
CDE05G2435 Ceratophyllum demersum HOM05D004086 ORTHO05D004641 3.2e-93 347.1 413 48.2
MD15G1266000 Malus domestica HOM05D004086 ORTHO05D004641 4.2e-93 346.7 562 41.5
Pp3c2_15450 Physcomitrium patens HOM05D004086 ORTHO05D004641 2.7e-92 344.0 739 36.0
Thhalv10023969m.g Eutrema salsugineum HOM05D004086 ORTHO05D004641 1.1e-90 338.6 521 40.3
HPP92_015988 Vanilla planifolia HOM05D004086 ORTHO05D004641 2.5e-90 337.4 682 36.1
FvH4_2g10200 Fragaria vesca HOM05D004086 ORTHO05D004641 5.9e-87 326.2 478 42.9
CDE10G1264 Ceratophyllum demersum HOM05D004086 ORTHO05D004641 1.3e-81 308.5 702 35.5
AL5G27650 Arabidopsis lyrata HOM05D004086 ORTHO05D004641 2.2e-81 307.8 478 40.2
Nitab4.5_0004445g0020 Nicotiana tabacum HOM05D004086 ORTHO05D004641 4.2e-77 293.5 351 46.4
Lsat_1_v5_gn_4_150881 Lactuca sativa HOM05D004086 ORTHO05D004641 6.3e-73 279.6 635 32.8
HPP92_026151 Vanilla planifolia HOM05D004086 ORTHO05D004641 8.0e-68 262.7 439 37.6
Haze_02100 Corylus avellana HOM05D004086 ORTHO05D004641 1.5e-53 215.3 268 50.0
CARHR050710 Cardamine hirsuta HOM05D004086 ORTHO05D004641 1.2e-52 212.2 217 49.3
Ca_29955_v3 Cicer arietinum L. HOM05D004086 ORTHO05D004641 2.4e-48 198.0 374 32.6
FAN24G1278 Fragaria x ananassa HOM05D004086 ORTHO05D004641 3.5e-47 194.1 460 34.6
PGSC0003DMG400012686 Solanum tuberosum HOM05D004086 ORTHO05D004641 6.6e-46 189.9 207 47.8
BcaC03g17736 Brassica carinata HOM05D004086 ORTHO05D004641 8.9e-43 179.5 327 39.8
Zm00001eb269010 Zea mays HOM05D004086 ORTHO05D004641 8.9e-43 179.5 242 44.2
CDE10G0302 Ceratophyllum demersum HOM05D004086 ORTHO05D004641 8.3e-41 172.9 237 46.4
CDE10G0017 Ceratophyllum demersum HOM05D004086 ORTHO05D004641 1.4e-40 172.2 236 43.2
AL253U10010 Arabidopsis lyrata HOM05D004086 ORTHO05D004641 1.8e-40 171.8 272 42.6
AUR62025404 Chenopodium quinoa HOM05D000200 ORTHO05D000262 5.4e-40 170.2 230 44.3
A02p38220 Brassica napus HOM05D004086 ORTHO05D004641 4.6e-39 167.2 340 37.4
Haze_15116 Corylus avellana HOM05D004086 ORTHO05D004641 8.6e-38 162.9 239 46.9
Cpa.g.sc353.1 Carica papaya HOM05D004086 ORTHO05D004641 1.9e-37 161.8 234 46.2
Zm00001eb269020 Zea mays HOM05D004086 ORTHO05D004641 1.6e-36 158.7 359 35.1
SEGI_33702 Sequoiadendron giganteum HOM05D004086 ORTHO05D004641 2.1e-36 158.3 329 34.0
C02p57460 Brassica napus HOM05D004086 ORTHO05D004641 3.5e-31 141.0 327 35.8
Oeu053017.4 Olea europaea HOM05D004086 ORTHO05D004641 3.5e-31 141.0 383 32.6
PSO017G0414 Papaver somniferum HOM05D004086 ORTHO05D004641 3.5e-31 141.0 526 28.5
Oeu053007.1 Olea europaea HOM05D004086 ORTHO05D004641 1.2e-28 132.5 315 35.2
CDE05G1436 Ceratophyllum demersum HOM05D004086 ORTHO05D004641 1.8e-27 128.6 149 45.0
BcaB07g34160 Brassica carinata HOM05D004086 ORTHO05D004641 1.3e-22 112.5 136 47.1
Lj4A239T53 Lonicera japonica HOM05D004086 ORTHO05D004641 1.1e-21 109.4 130 43.8
SHI06750 Sapria himalayana HOM05D004086 ORTHO05D004641 1.5e-21 109.0 141 43.3
Ah.15g091620 Amaranthus hybridus HOM05D004086 ORTHO05D004641 4.0e-19 100.9 104 51.9
Oeu014919.1 Olea europaea HOM05D004086 ORTHO05D004641 5.2e-19 100.5 653 26.8
SHI06749 Sapria himalayana HOM05D004086 ORTHO05D004641 4.4e-18 97.4 86 54.7
SEGI_29880 Sequoiadendron giganteum HOM05D004086 ORTHO05D004641 1.3e-17 95.9 80 57.5
Glyma.01G232951 Glycine max HOM05D001514 ORTHO05D002956 3.8e-17 94.4 234 32.9
Cre10.g454650 Chlamydomonas reinhardtii HOM05D004086 ORTHO05D004641 6.0e-15 87.0 155 34.8
BolC2t11821H Brassica oleracea HOM05D004086 ORTHO05D004641 1.7e-14 85.5 166 39.2
QL06p009809 Quercus lobata HOM05D004086 ORTHO05D004641 3.9e-14 84.3 82 56.1
SEGI_37045 Sequoiadendron giganteum HOM05D037714 ORTHO05D004641 5.1e-14 84.0 177 33.9
SEGI_36884 Sequoiadendron giganteum HOM05D004086 ORTHO05D004641 8.7e-14 83.2 191 36.6
Sc17g0002700 Simmondsia chinensis HOM05D004086 ORTHO05D004641 2.5e-13 81.6 103 46.6
MELO3C034917.2 Cucumis melo HOM05D004086 ORTHO05D004641 4.3e-13 80.9 73 52.1
MCO01G289 Micromonas commoda HOM05D004086 ORTHO05D004641 4.3e-13 80.9 608 23.2
HPP92_026150 Vanilla planifolia HOM05D004086 ORTHO05D004641 5.6e-13 80.5 102 42.2
CARHR050700 Cardamine hirsuta HOM05D004086 ORTHO05D004641 2.4e-11 75.1 80 52.5
Zm00001eb176250 Zea mays HOM05D004086 ORTHO05D004641 3.1e-11 74.7 192 32.8
Gohir.A11G236200 Gossypium hirsutum HOM05D004086 ORTHO05D004641 4.0e-11 74.3 87 46.0
PRCOL_00000416 Prasinoderma coloniale HOM05D004086 ORTHO05D004641 4.9e-09 67.4 420 24.5
Ca_29956_v3 Cicer arietinum L. HOM05D004086 ORTHO05D004641 6.4e-09 67.0 103 36.9
MBI08_g04811_MAGBIO Magnolia biondii HOM05D018116 ORTHO05D025787 6.0e-07 60.5 113 40.7
Os08g0268900 Oryza sativa ssp. japonica HOM05D004086 ORTHO05D004641 2.3e-06 58.5 118 33.1
MBI18_g12054_MAGBIO Magnolia biondii HOM05D018116 ORTHO05D025787 6.6e-06 57.0 112 38.4


User provided reference genes

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