Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01018952001 Vitis vinifera HOM05D004733 ORTHO05D005925 0.0e+00 2137.8 1067 100.0
CSS0026274 Camellia sinensis var. sinensis HOM05D004733 ORTHO05D005925 0.0e+00 1583.9 1068 73.6
Actinidia36563 Actinidia chinensis HOM05D004733 ORTHO05D005925 0.0e+00 1574.7 1070 73.6
Nn5g29624 Nelumbo nucifera HOM05D004733 ORTHO05D005925 0.0e+00 1572.8 1060 71.8
Ciclev10024776m.g Citrus clementina HOM05D004733 ORTHO05D005925 0.0e+00 1570.8 1070 72.6
CiPaw.02G018200 Carya illinoinensis HOM05D004733 ORTHO05D005925 0.0e+00 1565.4 1060 74.0
Atru.chr3.583 Acer truncatum HOM05D004733 ORTHO05D005925 0.0e+00 1564.3 1064 72.7
Dinv39990 Davidia involucrata HOM05D004733 ORTHO05D005925 0.0e+00 1554.3 1073 73.1
Cfa004311 Carpinus fangiana HOM05D004733 ORTHO05D005925 0.0e+00 1547.7 1060 73.0
MD02G1146900 Malus domestica HOM05D004733 ORTHO05D005925 0.0e+00 1532.7 1069 71.4
FvH4_1g13250 Fragaria vesca HOM05D004733 ORTHO05D005925 0.0e+00 1530.0 1054 71.9
Prupe.7G155300 Prunus persica HOM05D004733 ORTHO05D005925 0.0e+00 1527.3 1043 72.8
QL04p047829 Quercus lobata HOM05D004733 ORTHO05D005925 0.0e+00 1525.0 1095 70.9
RcHm_v2.0_Chr2g0101431 Rosa chinensis HOM05D004733 ORTHO05D005925 0.0e+00 1516.1 1055 71.3
Manes.02G094400 Manihot esculenta HOM05D004733 ORTHO05D005925 0.0e+00 1509.2 1064 70.1
Potri.007G024600 Populus trichocarpa HOM05D004733 ORTHO05D005925 0.0e+00 1506.9 1067 69.5
Rhsim02G0060300 Rhododendron simsii HOM05D004733 ORTHO05D005925 0.0e+00 1500.7 1176 65.9
Aqoxy6G01122 Aquilegia oxysepala HOM05D004733 ORTHO05D005925 0.0e+00 1492.6 1069 68.8
Thecc.01G034700 Theobroma cacao HOM05D004733 ORTHO05D005925 0.0e+00 1492.2 1067 71.1
CANSAT78G0304 Cannabis sativa HOM05D004733 ORTHO05D005925 0.0e+00 1491.5 1055 69.6
FAN19G0915 Fragaria x ananassa HOM05D004733 ORTHO05D005925 0.0e+00 1481.8 1054 70.3
Gohir.D11G190600 Gossypium hirsutum HOM05D004733 ORTHO05D005925 0.0e+00 1477.2 1070 69.9
Hma1.2p1_0789F.1_g218380 Hydrangea macrophylla HOM05D004733 ORTHO05D005925 0.0e+00 1475.3 1072 69.6
Gohir.A11G184100 Gossypium hirsutum HOM05D004733 ORTHO05D005925 0.0e+00 1471.8 1070 69.8
PGR119G1063 Punica granatum HOM05D004733 ORTHO05D005925 0.0e+00 1471.8 1067 68.1
Gorai.007G203100 Gossypium raimondii HOM05D004733 ORTHO05D005925 0.0e+00 1464.9 1077 69.3
Glyma.11G068600 Glycine max HOM05D004733 ORTHO05D005925 0.0e+00 1461.4 1069 68.3
Duzib187G1802 Durio zibethinus HOM05D004733 ORTHO05D005925 0.0e+00 1449.9 1064 69.1
TWI77G0475 Tripterygium wilfordii HOM05D004733 ORTHO05D005925 0.0e+00 1449.1 1066 69.2
Glyma.01G176400 Glycine max HOM05D004733 ORTHO05D005925 0.0e+00 1446.4 1070 67.5
THA.LOC104809497 Tarenaya hassleriana HOM05D004733 ORTHO05D005925 0.0e+00 1443.7 1067 67.6
Lj1g0005862 Lotus japonicus HOM05D004733 ORTHO05D005925 0.0e+00 1441.8 1066 67.1
Lalb_Chr16g0377811 Lupinus albus HOM05D004733 ORTHO05D005925 0.0e+00 1439.5 1068 67.7
Sed0013525 Sechium edule HOM05D004733 ORTHO05D005925 0.0e+00 1439.5 1068 67.2
MELO3C022270.2 Cucumis melo HOM05D004733 ORTHO05D005925 0.0e+00 1436.0 1070 67.4
arahy.Tifrunner.gnm1.ann1.VZ5KK1 Arachis hypogaea HOM05D004733 ORTHO05D005925 0.0e+00 1432.9 1068 66.9
Phvul.002G030700 Phaseolus vulgaris HOM05D004733 ORTHO05D005925 0.0e+00 1432.9 1062 67.1
arahy.Tifrunner.gnm1.ann1.6U5FTL Arachis hypogaea HOM05D004733 ORTHO05D005925 0.0e+00 1431.8 1071 66.1
arahy.Tifrunner.gnm1.ann1.VB3WEH Arachis hypogaea HOM05D004733 ORTHO05D005925 0.0e+00 1428.3 1075 66.4
CsaV3_5G036970 Cucumis sativus L. HOM05D004733 ORTHO05D005925 0.0e+00 1424.5 1069 66.8
Cpa.g.sc6.117 Carica papaya HOM05D004733 ORTHO05D005925 0.0e+00 1422.5 1079 67.0
FAN23G1660 Fragaria x ananassa HOM05D004733 ORTHO05D005925 0.0e+00 1419.8 1054 68.0
PSO675G5282 Papaver somniferum HOM05D004733 ORTHO05D005925 0.0e+00 1418.7 1073 65.9
Sc03g0003000 Simmondsia chinensis HOM05D004733 ORTHO05D005925 0.0e+00 1417.1 1022 68.8
CsaV3_6G008550 Cucumis sativus L. HOM05D004733 ORTHO05D005925 0.0e+00 1416.0 1060 67.0
Medtr5g020190 Medicago truncatula HOM05D004733 ORTHO05D005925 0.0e+00 1414.4 1063 66.3
PSO541G3573 Papaver somniferum HOM05D004733 ORTHO05D005925 0.0e+00 1412.1 1074 66.0
Psat2g159520 Pisum sativum HOM05D004733 ORTHO05D005925 0.0e+00 1407.5 1063 66.3
Carub.0002s0104 Capsella rubella HOM05D004733 ORTHO05D005925 0.0e+00 1405.6 1063 65.8
ClCG06G002580 Citrullus lanatus HOM05D004733 ORTHO05D005925 0.0e+00 1404.4 1080 65.8
AL2G11330 Arabidopsis lyrata HOM05D004733 ORTHO05D005925 0.0e+00 1402.9 1063 66.2
AUR62004057 Chenopodium quinoa HOM05D004733 ORTHO05D005925 0.0e+00 1402.9 1061 64.8
VMungo1215G0507 Vigna mungo HOM05D004733 ORTHO05D005925 0.0e+00 1399.8 1068 65.6
Oeu017201.1 Olea europaea HOM05D004733 ORTHO05D005925 0.0e+00 1397.1 1103 63.8
Cc03_g11520 Coffea canephora HOM05D004733 ORTHO05D005925 0.0e+00 1394.0 1069 64.7
Hund16432 Selenicereus undatus HOM05D004733 ORTHO05D005925 0.0e+00 1392.5 1102 64.0
Ah.03g140900 Amaranthus hybridus HOM05D004733 ORTHO05D005925 0.0e+00 1392.1 1058 64.6
Sp7g34280 Schrenkiella parvula HOM05D004733 ORTHO05D005925 0.0e+00 1390.6 1063 65.9
Thhalv10024292m.g Eutrema salsugineum HOM05D004733 ORTHO05D005925 0.0e+00 1390.2 1063 65.6
AUR62007571 Chenopodium quinoa HOM05D004733 ORTHO05D005925 0.0e+00 1385.5 1094 63.1
Lj4A201T52 Lonicera japonica HOM05D004733 ORTHO05D005925 0.0e+00 1384.4 1142 61.6
COL.COLO4_08906 Corchorus olitorius HOM05D004733 ORTHO05D005925 0.0e+00 1383.6 1096 64.6
EL10Ac6g15557 Beta vulgaris HOM05D004733 ORTHO05D005925 0.0e+00 1380.9 1093 63.8
AT1G63810 Arabidopsis thaliana HOM05D004733 ORTHO05D005925 0.0e+00 1380.2 1066 65.2
MSTRG.23523 Avicennia marina HOM05D004733 ORTHO05D005925 0.0e+00 1377.8 1061 63.1
Migut.H00986 Erythranthe guttata HOM05D004733 ORTHO05D005925 0.0e+00 1376.7 1057 63.6
BolC3t20259H Brassica oleracea HOM05D004733 ORTHO05D005925 0.0e+00 1375.9 1064 65.5
C03p80050 Brassica napus HOM05D004733 ORTHO05D005925 0.0e+00 1374.0 1064 65.5
CARHR047390 Cardamine hirsuta HOM05D004733 ORTHO05D005925 0.0e+00 1372.8 1065 65.0
A08p22270 Brassica napus HOM05D004733 ORTHO05D005925 0.0e+00 1367.1 1064 65.4
BraA08t34186Z Brassica rapa HOM05D004733 ORTHO05D005925 0.0e+00 1365.5 1064 65.3
Sabra07G0021700 Salix brachista HOM05D004733 ORTHO05D005925 0.0e+00 1365.1 1113 63.4
SalBow2G0826 Salvia bowleyana HOM05D004733 ORTHO05D005925 0.0e+00 1360.1 1062 62.9
Ca_24849_v3 Cicer arietinum L. HOM05D004733 ORTHO05D005925 0.0e+00 1357.8 1068 64.6
FAN28G2014 Fragaria x ananassa HOM05D004733 ORTHO05D005925 0.0e+00 1354.0 1059 65.2
TAR625G0290 Trochodendron aralioides HOM05D004733 ORTHO05D005925 0.0e+00 1351.3 1043 66.3
HanXRQChr09g0261511 Helianthus annuus HOM05D004733 ORTHO05D005925 0.0e+00 1350.5 1056 63.5
ECA232G2226 Erigeron canadensis HOM05D004733 ORTHO05D005925 0.0e+00 1334.7 1044 62.7
Solyc02g085230.3 Solanum lycopersicum HOM05D004733 ORTHO05D005925 0.0e+00 1324.3 1060 62.8
Sopen02g029930 Solanum pennellii HOM05D004733 ORTHO05D005925 0.0e+00 1322.0 1060 62.6
vmacro15553 Vaccinium macrocarpon HOM05D004733 ORTHO05D005925 0.0e+00 1312.4 1181 59.7
Lsat_1_v5_gn_4_152020 Lactuca sativa HOM05D004733 ORTHO05D005925 0.0e+00 1291.2 1060 61.4
Peaxi162Scf00366g00125 Petunia axillaris HOM05D004733 ORTHO05D005925 0.0e+00 1276.9 1070 61.7
Nitab4.5_0001385g0060 Nicotiana tabacum HOM05D004733 ORTHO05D005925 0.0e+00 1273.1 1077 60.9
BcaC01g00457 Brassica carinata HOM05D004733 ORTHO05D005925 0.0e+00 1266.5 1063 61.7
Nitab4.5_0000178g0060 Nicotiana tabacum HOM05D004733 ORTHO05D005925 0.0e+00 1237.6 1153 56.5
Eucgr.I02440 Eucalyptus grandis HOM05D004733 ORTHO05D005925 0.0e+00 1219.5 866 70.1
ATR0665G204 Amborella trichopoda HOM05D004733 ORTHO05D005925 0.0e+00 1212.2 1060 57.2
Zm00001eb139270 Zea mays HOM05D004733 ORTHO05D005925 0.0e+00 1175.2 1060 55.8
CDE02G4373 Ceratophyllum demersum HOM05D004733 ORTHO05D005925 0.0e+00 1172.5 1054 57.2
MBI14_g08060_MAGBIO Magnolia biondii HOM05D004733 ORTHO05D005925 0.0e+00 1109.7 879 63.6
DCAR_017293 Daucus carota HOM05D004733 ORTHO05D005925 0.0e+00 1084.7 1066 54.6
SEGI_35015 Sequoiadendron giganteum HOM05D004733 ORTHO05D005925 5.7e-291 1004.6 1033 50.1
A05p29760 Brassica napus HOM05D004733 ORTHO05D005925 3.6e-285 985.3 908 58.0
Haze_15084 Corylus avellana HOM05D004733 ORTHO05D005925 3.2e-281 972.2 895 58.4
TPR.G22288 Trifolium pratense HOM05D004733 ORTHO05D005925 2.7e-280 969.1 686 69.2
unitig_21.g20953 Utricularia gibba HOM05D004733 ORTHO05D005925 7.5e-267 924.5 1069 47.5
Pp3c6_25920 Physcomitrium patens HOM05D004733 ORTHO05D005925 1.6e-240 837.0 1069 42.7
CAN.G358.87 Capsicum annuum HOM05D004733 ORTHO05D005925 8.7e-231 804.7 742 55.7
Hma1.2p1_0789F.1_g218390 Hydrangea macrophylla HOM05D004733 ORTHO05D005925 5.7e-230 802.0 510 76.7
CAN.G3433.1 Capsicum annuum HOM05D004733 ORTHO05D005925 1.2e-227 794.3 713 56.8
MD15G1261100 Malus domestica HOM05D004733 ORTHO05D005925 5.5e-217 758.8 547 69.8
A05p29530 Brassica napus HOM05D004733 ORTHO05D005925 2.9e-210 736.5 734 55.0
HPP92_009474 Vanilla planifolia HOM05D004733 ORTHO05D005925 1.6e-208 730.7 830 49.5
SEGI_33720 Sequoiadendron giganteum HOM05D004733 ORTHO05D005925 2.1e-208 730.3 710 51.0
SGA_v2.0_scaffold54G19532 Striga asiatica HOM05D004733 ORTHO05D005925 3.5e-203 713.0 678 53.8
BcaNung05455 Brassica carinata HOM05D004733 ORTHO05D005925 5.2e-191 672.5 520 65.0
Mapoly0060s0020 Marchantia polymorpha HOM05D004733 ORTHO05D005925 2.0e-187 660.6 844 42.9
SHI09115 Sapria himalayana HOM05D004733 ORTHO05D005925 3.0e-183 646.7 604 56.6
QL06p046231 Quercus lobata HOM05D004733 ORTHO05D005925 8.3e-181 638.6 498 65.3
SMO347G0575 Selaginella moellendorffii HOM05D004733 ORTHO05D005925 3.1e-180 636.7 1058 38.3
CBR_g37736 Chara braunii HOM05D004733 ORTHO05D000048 1.3e-178 631.3 1038 36.3
AagrBONN_evm.TU.Sc2ySwM_228.918 Anthoceros agrestis HOM05D004733 ORTHO05D005925 5.0e-170 602.8 870 38.2
QL02p065465 Quercus lobata HOM05D004733 ORTHO05D005925 4.0e-167 593.2 444 67.1
Aa31LG3G3780 Aethionema arabicum HOM05D004733 ORTHO05D005925 1.1e-164 585.1 519 58.4
RcHm_v2.0_Chr2g0101471 Rosa chinensis HOM05D004733 ORTHO05D005925 1.4e-164 584.7 378 74.3
Aa31LG3G3760 Aethionema arabicum HOM05D004733 ORTHO05D005925 2.1e-131 474.6 351 65.5
Os12g0166500 Oryza sativa ssp. japonica HOM05D004733 ORTHO05D005925 3.0e-122 444.1 449 51.4
CAN.G358.91 Capsicum annuum HOM05D004733 ORTHO05D005925 2.1e-120 438.0 360 63.1
TPR.G8389 Trifolium pratense HOM05D004733 ORTHO05D005925 4.0e-119 433.7 347 62.5
MCO15G114 Micromonas commoda HOM05D004733 ORTHO05D005925 2.1e-112 411.4 867 32.1
GSVIVG01024291001 Vitis vinifera HOM05D004733 ORTHO05D005925 3.7e-88 330.9 177 92.7
Hma1.2p1_0400F.1_g144360 Hydrangea macrophylla HOM05D004733 ORTHO05D005925 3.1e-87 327.8 258 63.2
Cre07.g332800 Chlamydomonas reinhardtii HOM05D004733 ORTHO05D005925 4.1e-87 327.4 1146 26.7
Actinidia12125 Actinidia chinensis HOM05D004733 ORTHO05D005925 9.4e-84 316.2 221 71.5
CAN.G358.90 Capsicum annuum HOM05D004733 ORTHO05D005925 5.4e-71 273.9 223 58.3
arahy.Tifrunner.gnm1.ann1.VLQ9MW Arachis hypogaea HOM05D004733 ORTHO05D005925 2.0e-70 271.9 379 44.9
Ca_24844_v3 Cicer arietinum L. HOM05D004733 ORTHO05D005925 5.9e-70 270.4 293 50.9
A05p29770 Brassica napus HOM05D004733 ORTHO05D005925 4.2e-68 264.2 268 53.4
C07p61790 Brassica napus HOM05D004733 ORTHO05D005925 3.6e-67 261.2 410 41.7
HPP92_009475 Vanilla planifolia HOM05D004733 ORTHO05D005925 3.0e-66 258.1 206 61.2
arahy.Tifrunner.gnm1.ann1.T3TR42 Arachis hypogaea HOM05D004733 ORTHO05D005925 5.7e-65 253.8 513 35.1
Cfa025732 Carpinus fangiana HOM05D004733 ORTHO05D005925 1.7e-61 242.3 989 26.8
Phvul.011G118815 Phaseolus vulgaris HOM05D004733 ORTHO05D005925 1.2e-57 229.6 154 66.2
PRCOL_00003562 Prasinoderma coloniale HOM05D004733 ORTHO05D005925 5.7e-57 227.3 1184 24.7
Thhalv10021392m.g Eutrema salsugineum HOM05D004733 ORTHO05D005925 3.2e-55 221.5 322 41.3
QL02p065474 Quercus lobata HOM05D004733 ORTHO05D005925 1.9e-52 212.2 122 84.4
A05p29560 Brassica napus HOM05D004733 ORTHO05D005925 3.1e-50 204.9 211 52.1
AagrBONN_evm.TU.Sc2ySwM_228.917 Anthoceros agrestis HOM05D004733 ORTHO05D005925 2.3e-37 162.2 192 45.8
C07p61800 Brassica napus HOM05D004733 ORTHO05D005925 7.3e-36 157.1 328 32.9
Aa31LG3G3770 Aethionema arabicum HOM05D004733 ORTHO05D005925 6.2e-35 154.1 113 69.9
QL06p046242 Quercus lobata HOM05D004733 ORTHO05D005925 1.1e-31 143.3 106 67.0
TPR.G23227 Trifolium pratense HOM05D004733 ORTHO05D006027 2.3e-29 135.6 101 65.3
QL06p046224 Quercus lobata HOM05D004733 ORTHO05D005925 4.3e-28 131.3 106 60.4
Psat4g132320 Pisum sativum HOM05D004733 ORTHO05D010533 1.2e-27 129.8 154 47.4
Medtr1g110810 Medicago truncatula HOM05D004733 ORTHO05D005925 8.1e-27 127.1 156 47.4
Haze_15083 Corylus avellana HOM05D004733 ORTHO05D005925 6.9e-26 124.0 106 60.4
TPR.G36480 Trifolium pratense HOM05D004733 ORTHO05D008348 1.4e-23 116.3 76 68.4
RcHm_v2.0_Chr5g0064711 Rosa chinensis HOM05D004733 ORTHO05D005925 3.2e-23 115.2 163 41.1
Cc03_g11510 Coffea canephora HOM05D004733 ORTHO05D005925 2.5e-20 105.5 87 49.4
Lj1g0009863 Lotus japonicus HOM05D004733 ORTHO05D001264 2.0e-17 95.9 70 65.7
C05p48270 Brassica napus HOM05D004733 ORTHO05D005925 3.4e-17 95.1 104 49.0
Phvul.011G118830 Phaseolus vulgaris HOM05D004733 ORTHO05D005925 2.9e-16 92.0 122 43.4
arahy.Tifrunner.gnm1.ann1.1JA7FP Arachis hypogaea HOM05D004733 ORTHO05D005925 7.1e-15 87.4 70 55.7
A05p29540 Brassica napus HOM05D004733 ORTHO05D005925 4.3e-12 78.2 83 51.8
Psat2g060920 Pisum sativum HOM05D001085 ORTHO05D000895 1.8e-10 72.8 45 77.8
Psat0s2980g0040 Pisum sativum HOM05D000709 ORTHO05D002401 1.2e-06 60.1 75 52.0
Lsat_1_v5_gn_5_99100 Lactuca sativa HOM05D000032 ORTHO05D015646 7.9e-06 57.4 53 52.8


User provided reference genes

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