Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01018804001 Vitis vinifera HOM05D005734 ORTHO05D006990 1.3e-101 373.2 212 100.0
Dinv33615 Davidia involucrata HOM05D005734 ORTHO05D006990 7.9e-75 284.3 207 74.9
TAR376G0390 Trochodendron aralioides HOM05D005734 ORTHO05D006990 5.1e-74 281.6 209 72.2
Cc07_g10570 Coffea canephora HOM05D005734 ORTHO05D006990 2.0e-70 269.6 189 77.2
Lj2C466G2 Lonicera japonica HOM05D005734 ORTHO05D006990 1.3e-69 266.9 194 75.8
TWI09G0878 Tripterygium wilfordii HOM05D005734 ORTHO05D006990 1.3e-69 266.9 207 72.5
Thecc.01G021200 Theobroma cacao HOM05D005734 ORTHO05D006990 1.7e-69 266.5 210 70.5
TAR628G0339 Trochodendron aralioides HOM05D005734 ORTHO05D006990 1.7e-69 266.5 210 69.5
QL06p033653 Quercus lobata HOM05D005734 ORTHO05D006990 4.9e-69 265.0 200 73.0
COL.COLO4_21933 Corchorus olitorius HOM05D005734 ORTHO05D006990 8.4e-69 264.2 210 70.0
Eucgr.K02152 Eucalyptus grandis HOM05D005734 ORTHO05D006990 1.1e-68 263.8 209 69.9
Ciclev10026469m.g Citrus clementina HOM05D005734 ORTHO05D006990 4.2e-68 261.9 212 72.2
TWI73G0895 Tripterygium wilfordii HOM05D005734 ORTHO05D006990 5.5e-68 261.5 208 69.7
Lalb_Chr16g0391171 Lupinus albus HOM05D005734 ORTHO05D006990 2.7e-67 259.2 194 73.2
MD15G1247200 Malus domestica HOM05D005734 ORTHO05D006990 2.7e-67 259.2 211 68.2
Rhsim08G0034500 Rhododendron simsii HOM05D005734 ORTHO05D006990 3.5e-67 258.8 206 69.9
Glyma.11G075600 Glycine max HOM05D005734 ORTHO05D006990 4.6e-67 258.5 207 69.6
SalBow3G4629 Salvia bowleyana HOM05D005734 ORTHO05D006990 1.8e-66 256.5 204 68.1
Nn6g32291 Nelumbo nucifera HOM05D005734 ORTHO05D006990 2.3e-66 256.1 194 71.1
Ca_24908_v3 Cicer arietinum L. HOM05D005734 ORTHO05D006990 3.9e-66 255.4 207 69.1
Nitab4.5_0004254g0030 Nicotiana tabacum HOM05D005734 ORTHO05D006990 5.1e-66 255.0 211 70.1
Manes.02G102700 Manihot esculenta HOM05D005734 ORTHO05D006990 6.7e-66 254.6 214 68.2
Nitab4.5_0005721g0110 Nicotiana tabacum HOM05D005734 ORTHO05D006990 2.5e-65 252.7 211 70.1
PSO210G7806 Papaver somniferum HOM05D005734 ORTHO05D006990 2.5e-65 252.7 205 69.8
Phvul.002G110400 Phaseolus vulgaris HOM05D005734 ORTHO05D006990 3.3e-65 252.3 207 68.1
Actinidia31004 Actinidia chinensis HOM05D005734 ORTHO05D006990 7.4e-65 251.1 189 72.0
MSTRG.2698 Avicennia marina HOM05D005734 ORTHO05D006990 1.3e-64 250.4 188 72.3
Solyc02g084220.3 Solanum lycopersicum HOM05D005734 ORTHO05D006990 1.3e-64 250.4 192 72.4
CiPaw.08G133400 Carya illinoinensis HOM05D005734 ORTHO05D006990 1.6e-64 250.0 212 67.9
Sabra07G0011400 Salix brachista HOM05D005734 ORTHO05D006990 1.6e-64 250.0 213 68.5
EL10Ac3g07303 Beta vulgaris HOM05D005734 ORTHO05D006990 2.8e-64 249.2 189 70.9
Gorai.003G010600 Gossypium raimondii HOM05D005734 ORTHO05D006990 2.8e-64 249.2 186 71.0
DCAR_017347 Daucus carota HOM05D005734 ORTHO05D006990 3.7e-64 248.8 210 67.6
TPR.G2344 Trifolium pratense HOM05D005734 ORTHO05D006990 3.7e-64 248.8 207 67.1
CSS0031169 Camellia sinensis var. sinensis HOM05D005734 ORTHO05D006990 4.8e-64 248.4 191 71.2
RcHm_v2.0_Chr2g0099641 Rosa chinensis HOM05D005734 ORTHO05D006990 6.2e-64 248.1 210 65.2
Gohir.D03G010200 Gossypium hirsutum HOM05D005734 ORTHO05D006990 8.2e-64 247.7 203 66.5
Peaxi162Scf00083g00086 Petunia axillaris HOM05D005734 ORTHO05D006990 8.2e-64 247.7 184 75.0
Sopen02g028960 Solanum pennellii HOM05D005734 ORTHO05D006990 8.2e-64 247.7 192 71.9
Potri.005G116300 Populus trichocarpa HOM05D005734 ORTHO05D006990 1.1e-63 247.3 199 70.4
MD02G1134200 Malus domestica HOM05D005734 ORTHO05D006990 1.4e-63 246.9 211 65.4
VMungo1215G0268 Vigna mungo HOM05D005734 ORTHO05D006990 1.4e-63 246.9 207 66.7
Glyma.01G167600 Glycine max HOM05D005734 ORTHO05D006990 4.1e-63 245.4 207 66.7
Gohir.A02G169800 Gossypium hirsutum HOM05D005734 ORTHO05D006990 5.3e-63 245.0 192 68.2
Prupe.7G166600 Prunus persica HOM05D005734 ORTHO05D006990 6.9e-63 244.6 209 70.8
Medtr5g021750 Medicago truncatula HOM05D005734 ORTHO05D006990 9.0e-63 244.2 204 65.7
Lj2g0025294 Lotus japonicus HOM05D005734 ORTHO05D006990 2.0e-62 243.0 209 68.9
FAN19G0086 Fragaria x ananassa HOM05D005734 ORTHO05D006990 5.8e-62 241.5 210 63.3
CsaV3_4G005730 Cucumis sativus L. HOM05D005734 ORTHO05D006990 7.6e-62 241.1 214 65.0
ClCG07G008420 Citrullus lanatus HOM05D005734 ORTHO05D006990 1.3e-61 240.4 211 64.9
Duzib147G0754 Durio zibethinus HOM05D005734 ORTHO05D006990 1.3e-61 240.4 209 67.0
FvH4_1g12000 Fragaria vesca HOM05D005734 ORTHO05D006990 1.3e-61 240.4 210 63.3
arahy.Tifrunner.gnm1.ann1.GC558H Arachis hypogaea HOM05D005734 ORTHO05D006990 2.2e-61 239.6 208 64.4
Sabra05G0095300 Salix brachista HOM05D005734 ORTHO05D006990 3.8e-61 238.8 186 71.5
Migut.H01144 Erythranthe guttata HOM05D005734 ORTHO05D006990 8.4e-61 237.7 203 65.5
PGSC0003DMG400003554 Solanum tuberosum HOM05D005734 ORTHO05D006990 8.4e-61 237.7 218 64.2
Sed0005630 Sechium edule HOM05D005734 ORTHO05D006990 1.4e-60 236.9 211 64.9
Ah.03g141620 Amaranthus hybridus HOM05D005734 ORTHO05D006990 7.2e-60 234.6 208 64.4
Psat2g155360 Pisum sativum HOM05D005734 ORTHO05D006990 7.2e-60 234.6 207 63.3
Hund14038 Selenicereus undatus HOM05D005734 ORTHO05D006990 2.7e-59 232.6 227 60.8
Aqoxy4G02673 Aquilegia oxysepala HOM05D005734 ORTHO05D006990 3.5e-59 232.3 234 59.4
Aqoxy4G02678 Aquilegia oxysepala HOM05D005734 ORTHO05D006990 7.9e-59 231.1 200 65.0
THA.LOC104819182 Tarenaya hassleriana HOM05D005734 ORTHO05D006990 8.7e-58 227.6 186 66.7
Thhalv10004735m.g Eutrema salsugineum HOM05D005734 ORTHO05D006990 1.5e-57 226.9 187 66.3
AL8G45230 Arabidopsis lyrata HOM05D005734 ORTHO05D006990 1.9e-57 226.5 203 61.6
Aa31LG1G14770 Aethionema arabicum HOM05D005734 ORTHO05D006990 3.3e-57 225.7 187 66.8
AT5G66290 Arabidopsis thaliana HOM05D005734 ORTHO05D006990 7.4e-57 224.6 186 64.5
Carub.0008s2820 Capsella rubella HOM05D005734 ORTHO05D006990 7.4e-57 224.6 203 61.1
Sp2g30330 Schrenkiella parvula HOM05D005734 ORTHO05D006990 1.3e-56 223.8 188 66.0
HPP92_018404 Vanilla planifolia HOM05D005734 ORTHO05D006990 3.7e-56 222.2 189 66.7
ATR0147G004 Amborella trichopoda HOM05D005734 ORTHO05D006990 3.1e-55 219.2 184 66.3
Lsat_1_v5_gn_3_73980 Lactuca sativa HOM05D005734 ORTHO05D006990 5.3e-55 218.4 202 62.9
Cpa.g.sc6.229 Carica papaya HOM05D005734 ORTHO05D006990 9.0e-55 217.6 213 62.0
FAN26G0019 Fragaria x ananassa HOM05D005734 ORTHO05D006990 1.5e-54 216.9 210 63.8
Nn5g29268 Nelumbo nucifera HOM05D005734 ORTHO05D006990 1.5e-54 216.9 198 63.6
A07p17570 Brassica napus HOM05D005734 ORTHO05D006990 1.7e-53 213.4 197 60.9
Cfa006957 Carpinus fangiana HOM05D005734 ORTHO05D006990 2.2e-53 213.0 209 64.6
ECA246G4348 Erigeron canadensis HOM05D000013 ORTHO05D000011 5.0e-53 211.8 194 61.9
Os03g0727100 Oryza sativa ssp. japonica HOM05D005734 ORTHO05D006990 5.0e-53 211.8 201 62.7
vmacro18422 Vaccinium macrocarpon HOM05D005734 ORTHO05D006990 5.0e-53 211.8 249 53.4
MBI05_g26512_MAGBIO Magnolia biondii HOM05D005734 ORTHO05D006990 1.9e-52 209.9 212 60.8
BcaB02g10036 Brassica carinata HOM05D005734 ORTHO05D006990 2.5e-52 209.5 191 61.3
BcaC06g34694 Brassica carinata HOM05D005734 ORTHO05D006990 7.2e-52 208.0 195 61.5
C07p25530 Brassica napus HOM05D005734 ORTHO05D006990 7.2e-52 208.0 195 61.5
BolC7t43073H Brassica oleracea HOM05D005734 ORTHO05D006990 7.2e-52 208.0 195 61.5
Zm00001eb055930 Zea mays HOM05D005734 ORTHO05D006990 7.2e-52 208.0 202 59.9
BcaNung04509 Brassica carinata HOM05D005734 ORTHO05D006990 2.1e-51 206.5 191 61.3
HanXRQChr16g0531031 Helianthus annuus HOM05D005734 ORTHO05D006990 4.6e-51 205.3 195 62.6
QL06p033647 Quercus lobata HOM05D005734 ORTHO05D006990 6.1e-51 204.9 131 80.9
CSS0012385 Camellia sinensis var. sinensis HOM05D005734 ORTHO05D006990 1.4e-50 203.8 152 71.7
HanXRQChr15g0482851 Helianthus annuus HOM05D005734 ORTHO05D006990 1.8e-50 203.4 193 61.1
BcaC04g23120 Brassica carinata HOM05D005734 ORTHO05D006990 3.0e-50 202.6 190 61.1
BcaC04g23124 Brassica carinata HOM05D005734 ORTHO05D006990 3.0e-50 202.6 190 61.1
BcaNung05273 Brassica carinata HOM05D005734 ORTHO05D006990 3.0e-50 202.6 205 58.5
CSS0021905 Camellia sinensis var. sinensis HOM05D005734 ORTHO05D006990 3.9e-50 202.2 152 71.1
Gohir.A12G060300 Gossypium hirsutum HOM05D005734 ORTHO05D006990 1.1e-49 200.7 196 60.2
C09p11890 Brassica napus HOM05D005734 ORTHO05D006990 1.5e-49 200.3 173 63.6
BolC9t54077H Brassica oleracea HOM05D005734 ORTHO05D006990 1.5e-49 200.3 173 63.6
unitig_699.g19712 Utricularia gibba HOM05D005734 ORTHO05D006990 1.3e-48 197.2 179 60.9
A09p10030 Brassica napus HOM05D005734 ORTHO05D006990 1.7e-48 196.8 187 57.8
RcHm_v2.0_Chr1g0353231 Rosa chinensis HOM05D005734 ORTHO05D006990 2.4e-47 193.0 170 60.6
CARHR281420 Cardamine hirsuta HOM05D005734 ORTHO05D006990 3.1e-47 192.6 144 69.4
Lsat_1_v5_gn_4_152781 Lactuca sativa HOM05D005734 ORTHO05D006990 4.1e-47 192.2 179 62.6
Sc16g0002040 Simmondsia chinensis HOM05D005734 ORTHO05D006990 4.1e-47 192.2 163 67.5
RcHm_v2.0_Chr0c39g0503221 Rosa chinensis HOM05D005734 ORTHO05D006990 5.3e-47 191.8 148 66.2
RcHm_v2.0_Chr5g0080231 Rosa chinensis HOM05D005734 ORTHO05D006990 5.3e-47 191.8 158 63.3
AUR62018084 Chenopodium quinoa HOM05D005734 ORTHO05D006990 7.7e-46 188.0 140 69.3
arahy.Tifrunner.gnm1.ann1.DFQ3ES Arachis hypogaea HOM05D005734 ORTHO05D006990 1.0e-45 187.6 138 70.3
SGA_v2.0_scaffold137G35098 Striga asiatica HOM05D005734 ORTHO05D006990 1.9e-44 183.3 116 78.4
Atru.chr3.782 Acer truncatum HOM05D005734 ORTHO05D006990 4.2e-44 182.2 169 60.4
ATR0876G001 Amborella trichopoda HOM05D005734 ORTHO05D006990 4.4e-41 172.2 115 72.2
FAN23G1819 Fragaria x ananassa HOM05D005734 ORTHO05D006990 1.0e-37 161.0 199 51.8
Potri.007G014000 Populus trichocarpa HOM05D005734 ORTHO05D006990 3.8e-37 159.1 136 67.6
MELO3C016376.2 Cucumis melo HOM05D005734 ORTHO05D006990 1.8e-34 150.2 137 64.2
PSO170G3799 Papaver somniferum HOM05D005734 ORTHO05D006990 1.5e-33 147.1 122 68.9
CDE11G0627 Ceratophyllum demersum HOM05D005734 ORTHO05D006990 6.3e-32 141.7 108 66.7
Sc18g0002570 Simmondsia chinensis HOM05D005734 ORTHO05D006990 2.2e-29 133.3 102 70.6
Sc16g0006390 Simmondsia chinensis HOM05D005734 ORTHO05D006990 1.1e-28 131.0 102 69.6
Sc09g0006730 Simmondsia chinensis HOM05D005734 ORTHO05D006990 2.7e-27 126.3 102 67.6
Gorai.008G063500 Gossypium raimondii HOM05D005734 ORTHO05D006990 2.4e-23 113.2 113 58.4
BraA09t36646Z Brassica rapa HOM05D005734 ORTHO05D006990 3.1e-23 112.8 96 63.5
Pp3c14_25740 Physcomitrium patens HOM05D005734 ORTHO05D006990 7.0e-23 111.7 215 35.8
Lsat_1_v5_gn_4_38760 Lactuca sativa HOM05D005734 ORTHO05D006990 9.1e-23 111.3 121 58.7
Mapoly0166s0009 Marchantia polymorpha HOM05D005734 ORTHO05D006990 2.0e-22 110.2 186 37.1
Pp3c1_42750 Physcomitrium patens HOM05D005734 ORTHO05D006990 1.7e-21 107.1 214 33.2
Haze_03794 Corylus avellana HOM05D005734 ORTHO05D006990 5.0e-21 105.5 68 79.4
Lj2A474G36 Lonicera japonica HOM05D005734 ORTHO05D006990 5.0e-21 105.5 151 46.4
FAN28G1963 Fragaria x ananassa HOM05D005734 ORTHO05D006990 4.2e-20 102.4 99 58.6
CDE05G1720 Ceratophyllum demersum HOM05D005734 ORTHO05D006990 1.6e-19 100.5 148 45.9
RcHm_v2.0_Chr2g0126361 Rosa chinensis HOM05D005734 ORTHO05D006990 1.8e-18 97.1 65 72.3
Lj2C474G2 Lonicera japonica HOM05D005734 ORTHO05D006990 9.8e-17 91.3 59 78.0
Medtr5g021780 Medicago truncatula HOM05D005734 ORTHO05D006990 1.3e-16 90.9 82 57.3
SMO228G0004 Selaginella moellendorffii HOM05D005734 ORTHO05D006990 2.2e-16 90.1 116 39.7
Gohir.D12G060400 Gossypium hirsutum HOM05D005734 ORTHO05D006990 7.3e-12 75.1 78 53.8
AagrBONN_evm.TU.Sc2ySwM_117.481 Anthoceros agrestis HOM05D005734 ORTHO05D006990 1.2e-11 74.3 140 35.7
Eucgr.L03507 Eucalyptus grandis HOM05D005734 ORTHO05D006990 1.3e-08 64.3 82 59.8
HanXRQChr04g0110971 Helianthus annuus HOM05D000316 ORTHO05D012803 5.9e-06 55.5 63 54.0


User provided reference genes

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