Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01018736001 Vitis vinifera HOM05D006562 ORTHO05D008230 0.0e+00 1191.0 606 100.0
Dinv33663 Davidia involucrata HOM05D006562 ORTHO05D008230 1.2e-232 810.1 615 68.6
Cfa007000 Carpinus fangiana HOM05D006562 ORTHO05D008230 2.1e-229 799.3 614 68.1
Haze_03732 Corylus avellana HOM05D006562 ORTHO05D008230 4.1e-225 785.0 650 64.5
CiPaw.07G060900 Carya illinoinensis HOM05D006562 ORTHO05D008230 2.7e-221 772.3 611 65.5
QL06p051072 Quercus lobata HOM05D006562 ORTHO05D008230 6.7e-220 767.7 624 66.7
Actinidia22955 Actinidia chinensis HOM05D006562 ORTHO05D008230 4.5e-216 755.0 614 63.8
Atru.chr3.853 Acer truncatum HOM05D006562 ORTHO05D008230 8.5e-215 750.7 648 62.7
vmacro22151 Vaccinium macrocarpon HOM05D006562 ORTHO05D008230 5.5e-214 748.0 617 63.4
vmacro22192 Vaccinium macrocarpon HOM05D006562 ORTHO05D008230 9.4e-214 747.3 617 63.4
TWI53G1373 Tripterygium wilfordii HOM05D006562 ORTHO05D008230 2.7e-213 745.7 612 64.9
TAR376G1060 Trochodendron aralioides HOM05D006562 ORTHO05D008230 1.1e-211 740.3 626 62.9
Potri.005G111000 Populus trichocarpa HOM05D006562 ORTHO05D008230 4.4e-211 738.4 614 64.5
MD15G1242700 Malus domestica HOM05D006562 ORTHO05D008230 5.7e-211 738.0 615 63.4
Thecc.01G014800 Theobroma cacao HOM05D006562 ORTHO05D008230 1.4e-209 733.4 616 64.0
Manes.01G148500 Manihot esculenta HOM05D006562 ORTHO05D008230 1.2e-205 720.3 621 61.0
CSS0025685 Camellia sinensis var. sinensis HOM05D006562 ORTHO05D008230 1.0e-204 717.2 615 61.8
Lj2A480G48 Lonicera japonica HOM05D006562 ORTHO05D008230 1.1e-203 713.8 622 62.5
COL.COLO4_22460 Corchorus olitorius HOM05D006562 ORTHO05D008230 2.0e-203 713.0 618 61.7
Cpa.g.sc6.285 Carica papaya HOM05D006562 ORTHO05D008230 3.3e-203 712.2 640 61.2
RcHm_v2.0_Chr2g0099051 Rosa chinensis HOM05D006562 ORTHO05D008230 1.8e-201 706.4 628 61.6
Sabra05G0091000 Salix brachista HOM05D006562 ORTHO05D008230 1.6e-200 703.4 632 60.9
Gohir.D10G089300 Gossypium hirsutum HOM05D006562 ORTHO05D008230 5.9e-200 701.4 620 61.6
Gorai.011G098200 Gossypium raimondii HOM05D006562 ORTHO05D008230 1.7e-199 699.9 620 61.6
CANSAT25G3480 Cannabis sativa HOM05D006562 ORTHO05D008230 5.5e-198 694.9 623 61.5
Gohir.A10G098700 Gossypium hirsutum HOM05D006562 ORTHO05D008230 7.2e-198 694.5 620 61.0
Lj4g0007150 Lotus japonicus HOM05D006562 ORTHO05D008230 1.3e-194 683.7 616 59.3
FvH4_1g11470 Fragaria vesca HOM05D006562 ORTHO05D008230 1.7e-194 683.3 626 60.2
FAN28G2818 Fragaria x ananassa HOM05D006562 ORTHO05D008230 1.7e-194 683.3 622 60.3
Sed0025600 Sechium edule HOM05D006562 ORTHO05D008230 1.1e-193 680.6 592 61.0
FAN19G2077 Fragaria x ananassa HOM05D006562 ORTHO05D008230 7.0e-193 677.9 639 59.0
FAN23G1005 Fragaria x ananassa HOM05D006562 ORTHO05D008230 1.7e-191 673.3 625 59.7
HanXRQChr15g0483891 Helianthus annuus HOM05D006562 ORTHO05D008230 1.1e-190 670.6 613 58.1
Sc16g0001970 Simmondsia chinensis HOM05D006562 ORTHO05D008230 2.7e-189 666.0 618 59.1
Duzib187G1447 Durio zibethinus HOM05D006562 ORTHO05D008230 4.4e-187 658.7 622 58.7
TPR.G19508 Trifolium pratense HOM05D006562 ORTHO05D008230 4.4e-187 658.7 613 59.1
Glyma.16G124500 Glycine max HOM05D006562 ORTHO05D008230 1.7e-186 656.8 616 59.3
ClCG01G020460 Citrullus lanatus HOM05D006562 ORTHO05D008230 2.2e-186 656.4 615 59.2
CsaV3_6G047340 Cucumis sativus L. HOM05D006562 ORTHO05D008230 2.2e-186 656.4 616 59.4
Oeu048479.1 Olea europaea HOM05D006562 ORTHO05D008230 3.1e-185 652.5 615 58.0
Ca_03628_v3 Cicer arietinum L. HOM05D006562 ORTHO05D008230 4.1e-185 652.1 633 56.2
Psat4g101960 Pisum sativum HOM05D006562 ORTHO05D008230 4.1e-185 652.1 618 57.4
DCAR_014038 Daucus carota HOM05D006562 ORTHO05D008230 2.9e-183 646.0 524 63.0
Medtr8g075250 Medicago truncatula HOM05D006562 ORTHO05D008230 2.9e-183 646.0 617 57.7
Eucgr.I02333 Eucalyptus grandis HOM05D006562 ORTHO05D008230 1.9e-182 643.3 623 58.1
Phvul.003G265000 Phaseolus vulgaris HOM05D006562 ORTHO05D008230 1.9e-182 643.3 572 61.0
Solyc02g083600.4 Solanum lycopersicum HOM05D006562 ORTHO05D008230 5.6e-182 641.7 618 57.3
Nitab4.5_0001892g0110 Nicotiana tabacum HOM05D006562 ORTHO05D008230 7.2e-182 641.3 615 56.9
Prupe.7G171500 Prunus persica HOM05D006562 ORTHO05D008230 2.1e-181 639.8 516 66.5
arahy.Tifrunner.gnm1.ann1.X2JQ1G Arachis hypogaea HOM05D006562 ORTHO05D008230 3.6e-181 639.0 621 57.0
arahy.Tifrunner.gnm1.ann1.6MN492 Arachis hypogaea HOM05D006562 ORTHO05D008230 4.7e-181 638.6 619 57.2
Ciclev10025220m.g Citrus clementina HOM05D006562 ORTHO05D008230 2.3e-180 636.3 622 57.6
Cc07_g11050 Coffea canephora HOM05D006562 ORTHO05D008230 4.0e-180 635.6 615 57.4
Sopen02g028380 Solanum pennellii HOM05D006562 ORTHO05D008230 8.9e-180 634.4 578 59.7
Lsat_1_v5_gn_3_72080 Lactuca sativa HOM05D006562 ORTHO05D008230 2.6e-179 632.9 624 57.9
VMungo0251G0646 Vigna mungo HOM05D006562 ORTHO05D008230 2.6e-179 632.9 613 57.7
MBI05_g23389_MAGBIO Magnolia biondii HOM05D006562 ORTHO05D008230 1.7e-178 630.2 656 56.1
Nitab4.5_0003187g0030 Nicotiana tabacum HOM05D006562 ORTHO05D008230 1.8e-177 626.7 615 56.4
Lalb_Chr16g0391391 Lupinus albus HOM05D006562 ORTHO05D008230 2.0e-176 623.2 614 57.0
SalBow5G1234 Salvia bowleyana HOM05D006562 ORTHO05D008230 5.6e-174 615.1 630 54.6
MELO3C007925.2 Cucumis melo HOM05D006562 ORTHO05D008230 2.9e-170 602.8 680 52.5
Migut.L00910 Erythranthe guttata HOM05D006562 ORTHO05D008230 2.9e-170 602.8 616 56.2
AUR62003339 Chenopodium quinoa HOM05D006562 ORTHO05D008230 2.4e-169 599.7 572 56.6
PGSC0003DMG400003647 Solanum tuberosum HOM05D006562 ORTHO05D008230 9.2e-169 597.8 522 60.5
SGA_v2.0_scaffold229G43296 Striga asiatica HOM05D006562 ORTHO05D008230 9.2e-169 597.8 551 58.6
Peaxi162Scf00328g00616 Petunia axillaris HOM05D006562 ORTHO05D008230 7.8e-168 594.7 639 54.1
AL8G45460 Arabidopsis lyrata HOM05D006562 ORTHO05D008230 1.7e-167 593.6 604 55.5
Aqoxy5G01815 Aquilegia oxysepala HOM05D006562 ORTHO05D008230 2.3e-167 593.2 577 56.2
AT5G66130 Arabidopsis thaliana HOM05D006562 ORTHO05D008230 5.0e-167 592.0 611 54.3
Carub.0008s2836 Capsella rubella HOM05D006562 ORTHO05D008230 5.0e-167 592.0 616 54.7
Thhalv10003881m.g Eutrema salsugineum HOM05D006562 ORTHO05D008230 1.5e-166 590.5 604 55.1
Sp2g30560 Schrenkiella parvula HOM05D006562 ORTHO05D008230 6.2e-165 585.1 620 53.5
CAN.G1274.29 Capsicum annuum HOM05D006562 ORTHO05D008230 8.1e-165 584.7 548 57.1
EL10Ac6g15524 Beta vulgaris HOM05D006562 ORTHO05D008230 2.3e-164 583.2 665 51.4
CARHR281620 Cardamine hirsuta HOM05D006562 ORTHO05D008230 2.2e-162 576.6 610 53.1
AUR62029498 Chenopodium quinoa HOM05D006562 ORTHO05D008230 1.1e-161 574.3 537 56.6
PGR119G1624 Punica granatum HOM05D006562 ORTHO05D008230 4.6e-160 568.9 612 52.3
Rhsim10G0209300 Rhododendron simsii HOM05D006562 ORTHO05D008230 1.5e-158 563.9 618 51.6
PSO170G3776 Papaver somniferum HOM05D006562 ORTHO05D008230 5.8e-155 552.0 640 51.4
BcaB04g20123 Brassica carinata HOM05D006562 ORTHO05D008230 4.9e-154 548.9 611 51.4
PSO700G0294 Papaver somniferum HOM05D006562 ORTHO05D008230 4.9e-154 548.9 639 50.7
MSTRG.15581 Avicennia marina HOM05D006562 ORTHO05D008230 8.4e-154 548.1 496 59.5
BraA09t36658Z Brassica rapa HOM05D006562 ORTHO05D008230 1.4e-153 547.4 616 52.1
BcaC04g23114 Brassica carinata HOM05D006562 ORTHO05D008230 3.2e-153 546.2 580 53.4
Aa31LG1G14620 Aethionema arabicum HOM05D006562 ORTHO05D008230 1.7e-151 540.4 517 56.1
Ah.03g149120 Amaranthus hybridus HOM05D006562 ORTHO05D008230 2.4e-148 530.0 628 49.0
BolC9t54092H Brassica oleracea HOM05D006562 ORTHO05D008230 5.2e-148 528.9 580 52.6
C09p12020 Brassica napus HOM05D006562 ORTHO05D008230 8.9e-148 528.1 580 52.4
A09p10140 Brassica napus HOM05D006562 ORTHO05D008230 9.9e-147 524.6 610 50.3
ECA246G3730 Erigeron canadensis HOM05D006562 ORTHO05D008230 5.4e-145 518.8 575 52.2
ATR0712G114 Amborella trichopoda HOM05D006562 ORTHO05D008230 2.3e-143 513.5 523 54.9
HPP92_022171 Vanilla planifolia HOM05D006562 ORTHO05D008230 9.6e-142 508.1 637 47.1
Hund16502 Selenicereus undatus HOM05D006562 ORTHO05D008230 4.0e-140 502.7 443 60.0
unitig_37.g12438 Utricularia gibba HOM05D006562 ORTHO05D008230 7.6e-139 498.4 615 48.0
Os03g0242100 Oryza sativa ssp. japonica HOM05D006562 ORTHO05D008230 1.5e-131 474.2 595 47.2
SHI08537 Sapria himalayana HOM05D006562 ORTHO05D008230 3.8e-130 469.5 402 57.2
Zm00001eb398900 Zea mays HOM05D006562 ORTHO05D008230 4.5e-123 446.0 526 48.5
HPP92_022170 Vanilla planifolia HOM05D006562 ORTHO05D008230 3.4e-99 366.7 451 48.8
SMO329G0081 Selaginella moellendorffii HOM05D006562 ORTHO05D008230 6.1e-96 355.9 489 40.3
Pp3c8_14180 Physcomitrium patens HOM05D006562 ORTHO05D008230 8.5e-90 335.5 454 42.3
CDE02G3565 Ceratophyllum demersum HOM05D006562 ORTHO05D008230 3.5e-83 313.5 525 38.9
Mapoly0004s0213 Marchantia polymorpha HOM05D006562 ORTHO05D008230 1.0e-82 312.0 644 36.0
Dinv33664 Davidia involucrata HOM05D006562 ORTHO05D008230 3.0e-79 300.4 287 59.2
FAN26G2549 Fragaria x ananassa HOM05D006562 ORTHO05D008230 1.6e-59 235.0 205 61.5
SEGI_24182 Sequoiadendron giganteum HOM05D006562 ORTHO05D008230 3.5e-59 233.8 319 42.6
Hma1.2p1_0315F.1_g122300 Hydrangea macrophylla HOM05D006562 ORTHO05D008230 1.0e-55 222.2 192 64.6
MCO01G428 Micromonas commoda HOM05D006562 ORTHO05D008230 3.3e-41 174.1 567 26.8
Cre03.g196600 Chlamydomonas reinhardtii HOM05D006562 ORTHO05D008230 2.4e-31 141.4 577 25.3
PRCOL_00000425 Prasinoderma coloniale HOM05D006562 ORTHO05D008230 2.6e-30 137.9 427 28.3
Lsat_1_v5_gn_5_17820 Lactuca sativa HOM05D002511 ORTHO05D019442 6.6e-26 123.2 125 52.0
CBR_g51010 Chara braunii HOM05D006562 ORTHO05D008230 8.7e-26 122.9 376 30.9
Hund31353 Selenicereus undatus HOM05D006562 ORTHO05D008230 2.3e-18 98.2 128 46.1
Hund31354 Selenicereus undatus HOM05D006562 ORTHO05D008230 2.3e-18 98.2 128 46.1
Hund31048 Selenicereus undatus HOM05D006562 ORTHO05D008230 1.1e-17 95.9 128 45.3
Hund31049 Selenicereus undatus HOM05D006562 ORTHO05D008230 1.1e-17 95.9 128 45.3
Sopen10g019740 Solanum pennellii HOM05D006562 ORTHO05D008230 7.4e-17 93.2 68 64.7
SEGI_14672 Sequoiadendron giganteum HOM05D006562 ORTHO05D008230 6.4e-13 80.1 135 40.7
Actinidia17422 Actinidia chinensis HOM05D006562 ORTHO05D008230 1.8e-10 72.0 202 31.7
CARHR071130 Cardamine hirsuta HOM05D004094 ORTHO05D004601 1.5e-09 68.9 289 22.8
Aa31LG4G7730 Aethionema arabicum HOM05D004094 ORTHO05D004601 2.5e-09 68.2 291 24.7
Lsat_1_v5_gn_5_12680 Lactuca sativa HOM05D004664 ORTHO05D005526 5.6e-09 67.0 79 50.6
AL142U10030 Arabidopsis lyrata HOM05D004094 ORTHO05D004601 1.6e-08 65.5 306 25.2
AL2G37830 Arabidopsis lyrata HOM05D004094 ORTHO05D004601 1.6e-08 65.5 306 25.2
Thhalv10018028m.g Eutrema salsugineum HOM05D004094 ORTHO05D004601 3.7e-08 64.3 303 24.1
A07p43010 Brassica napus HOM05D004094 ORTHO05D004601 8.2e-08 63.2 286 24.1
Carub.0002s2451 Capsella rubella HOM05D004094 ORTHO05D004601 1.8e-07 62.0 315 23.5
Sp5g32780 Schrenkiella parvula HOM05D004094 ORTHO05D004601 1.8e-07 62.0 305 23.6
THA.LOC104800189 Tarenaya hassleriana HOM05D004094 ORTHO05D004601 1.8e-07 62.0 305 22.6
THA.LOC104800207 Tarenaya hassleriana HOM05D001470 ORTHO05D006756 1.8e-07 62.0 261 25.3
BraA07t31822Z Brassica rapa HOM05D004094 ORTHO05D004601 2.4e-07 61.6 286 24.1
AT1G77620 Arabidopsis thaliana HOM05D004094 ORTHO05D004601 4.0e-07 60.8 294 24.8
BcaC08g47600 Brassica carinata HOM05D004094 ORTHO05D004601 4.0e-07 60.8 299 23.4
C06p51630 Brassica napus HOM05D004094 ORTHO05D004601 4.0e-07 60.8 299 23.4
BolC6t40183H Brassica oleracea HOM05D004094 ORTHO05D004601 1.2e-06 59.3 295 23.7
SEGI_11240 Sequoiadendron giganteum HOM05D001470 ORTHO05D006756 1.5e-06 58.9 245 24.5
Medtr3g088120 Medicago truncatula HOM05D001470 ORTHO05D006756 2.0e-06 58.5 258 23.6
Ca_16563_v3 Cicer arietinum L. HOM05D001470 ORTHO05D006756 4.5e-06 57.4 258 23.6
GSVIVG01021360001 Vitis vinifera HOM05D000018 ORTHO05D000187 7.6e-06 56.6 32 90.6
ATR0709G002 Amborella trichopoda HOM05D001470 ORTHO05D006756 1.0e-05 56.2 245 23.7


User provided reference genes

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