Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01018732001 Vitis vinifera HOM05D005052 ORTHO05D006226 6.1e-258 893.6 457 100.0
Prupe.7G171600 Prunus persica HOM05D005052 ORTHO05D006226 1.9e-214 749.2 460 83.9
Dinv40116 Davidia involucrata HOM05D005052 ORTHO05D006226 3.0e-212 741.9 459 83.0
CiPaw.07G061100 Carya illinoinensis HOM05D005052 ORTHO05D006226 1.7e-207 726.1 461 82.0
MD15G1242600 Malus domestica HOM05D005052 ORTHO05D006226 2.9e-207 725.3 458 82.3
QL06p051082 Quercus lobata HOM05D005052 ORTHO05D006226 3.8e-207 724.9 458 82.1
RcHm_v2.0_Chr2g0099021 Rosa chinensis HOM05D005052 ORTHO05D006226 4.9e-207 724.5 457 80.7
Atru.chr3.855 Acer truncatum HOM05D005052 ORTHO05D006226 7.8e-205 717.2 434 84.3
CiPaw.08G130500 Carya illinoinensis HOM05D005052 ORTHO05D006226 2.3e-204 715.7 462 80.1
Cfa007001 Carpinus fangiana HOM05D005052 ORTHO05D006226 3.0e-204 715.3 460 79.3
COL.COLO4_22462 Corchorus olitorius HOM05D005052 ORTHO05D006226 1.1e-203 713.4 457 80.7
CANSAT25G2560 Cannabis sativa HOM05D005052 ORTHO05D006226 1.5e-203 713.0 460 80.9
Thecc.01G014600 Theobroma cacao HOM05D005052 ORTHO05D006226 5.6e-203 711.1 458 81.0
Haze_03731 Corylus avellana HOM05D005052 ORTHO05D006226 2.1e-202 709.1 474 77.2
Cpa.g.sc6.286 Carica papaya HOM05D005052 ORTHO05D006226 6.2e-202 707.6 457 80.1
Ca_24920_v3 Cicer arietinum L. HOM05D005052 ORTHO05D006226 3.1e-201 705.3 388 89.9
Duzib147G0491 Durio zibethinus HOM05D005052 ORTHO05D006226 9.0e-201 703.7 458 80.1
Gohir.D12G058900 Gossypium hirsutum HOM05D005052 ORTHO05D006226 2.6e-200 702.2 461 80.0
Nn1g06262 Nelumbo nucifera HOM05D005052 ORTHO05D006226 2.6e-200 702.2 456 79.6
Lj2g0011110 Lotus japonicus HOM05D005052 ORTHO05D006226 1.7e-199 699.5 460 80.0
vmacro18426 Vaccinium macrocarpon HOM05D005052 ORTHO05D006226 2.9e-199 698.7 402 86.3
Gohir.A12G058900 Gossypium hirsutum HOM05D005052 ORTHO05D006226 3.8e-199 698.4 457 80.1
Nn5g28565 Nelumbo nucifera HOM05D005052 ORTHO05D006226 3.8e-199 698.4 455 78.5
Medtr5g022580 Medicago truncatula HOM05D005052 ORTHO05D006226 4.9e-199 698.0 457 78.8
TWI53G1960 Tripterygium wilfordii HOM05D005052 ORTHO05D006226 4.9e-199 698.0 459 79.5
FAN28G0876 Fragaria x ananassa HOM05D005052 ORTHO05D006226 8.4e-199 697.2 457 78.8
Cc07_g11060 Coffea canephora HOM05D005052 ORTHO05D006226 1.4e-198 696.4 426 81.9
Eucgr.J02467 Eucalyptus grandis HOM05D005052 ORTHO05D006226 1.4e-198 696.4 462 77.7
CsaV3_3G000670 Cucumis sativus L. HOM05D005052 ORTHO05D006226 4.2e-198 694.9 458 78.6
FvH4_1g11430 Fragaria vesca HOM05D005052 ORTHO05D006226 5.4e-198 694.5 457 78.6
FAN19G0738 Fragaria x ananassa HOM05D005052 ORTHO05D006226 1.6e-197 693.0 457 78.8
Gorai.008G062200 Gossypium raimondii HOM05D005052 ORTHO05D006226 1.6e-197 693.0 462 79.4
TAR381G1626 Trochodendron aralioides HOM05D005052 ORTHO05D006226 1.6e-197 693.0 458 78.4
PSO541G6199 Papaver somniferum HOM05D005052 ORTHO05D006226 4.6e-197 691.4 453 78.6
TPR.G10542 Trifolium pratense HOM05D005052 ORTHO05D006226 4.6e-197 691.4 385 88.8
FAN26G3360 Fragaria x ananassa HOM05D005052 ORTHO05D006226 6.0e-197 691.0 470 77.0
Lalb_Chr05g0212261 Lupinus albus HOM05D005052 ORTHO05D006226 1.0e-196 690.3 446 80.0
MELO3C013755.2 Cucumis melo HOM05D005052 ORTHO05D006226 1.3e-196 689.9 458 78.4
VMungo1215G2918 Vigna mungo HOM05D005052 ORTHO05D006226 1.8e-196 689.5 461 78.3
arahy.Tifrunner.gnm1.ann1.1KVD1S Arachis hypogaea HOM05D005052 ORTHO05D006226 2.3e-196 689.1 457 79.2
arahy.Tifrunner.gnm1.ann1.PYN71E Arachis hypogaea HOM05D005052 ORTHO05D006226 2.3e-196 689.1 457 79.2
Glyma.11G078700 Glycine max HOM05D005052 ORTHO05D006226 2.3e-196 689.1 388 87.4
TWI09G1579 Tripterygium wilfordii HOM05D005052 ORTHO05D006226 3.0e-196 688.7 458 79.7
Sed0003793 Sechium edule HOM05D005052 ORTHO05D006226 5.1e-196 688.0 445 77.8
Potri.005G110900 Populus trichocarpa HOM05D005052 ORTHO05D006226 6.7e-196 687.6 460 78.0
Psat2g153160 Pisum sativum HOM05D005052 ORTHO05D006226 8.7e-196 687.2 388 87.6
Sabra05G0090900 Salix brachista HOM05D005052 ORTHO05D006226 2.5e-195 685.6 460 78.7
Actinidia22954 Actinidia chinensis HOM05D005052 ORTHO05D006226 5.6e-195 684.5 378 88.6
Glyma.01G164300 Glycine max HOM05D005052 ORTHO05D006226 5.6e-195 684.5 388 87.4
FAN23G2381 Fragaria x ananassa HOM05D005052 ORTHO05D006226 7.4e-195 684.1 457 77.7
Oeu048477.1 Olea europaea HOM05D005052 ORTHO05D006226 7.4e-195 684.1 459 77.8
PSO675G6089 Papaver somniferum HOM05D005052 ORTHO05D006226 9.6e-195 683.7 457 78.3
PGR102G0465 Punica granatum HOM05D005052 ORTHO05D006226 9.6e-195 683.7 458 77.9
Rhsim08G0032100 Rhododendron simsii HOM05D005052 ORTHO05D006226 9.6e-195 683.7 387 86.8
ClCG10G000590 Citrullus lanatus HOM05D005052 ORTHO05D006226 3.6e-194 681.8 457 77.2
Lalb_Chr09g0321611 Lupinus albus HOM05D005052 ORTHO05D006226 4.8e-194 681.4 387 88.1
Nitab4.5_0008943g0020 Nicotiana tabacum HOM05D005052 ORTHO05D006226 8.1e-194 680.6 462 75.8
Sc03g0003700 Simmondsia chinensis HOM05D005052 ORTHO05D006226 1.4e-193 679.9 457 77.9
Gorai.007G192400 Gossypium raimondii HOM05D005052 ORTHO05D006226 3.1e-193 678.7 457 78.1
Phvul.002G106700 Phaseolus vulgaris HOM05D005052 ORTHO05D006226 3.1e-193 678.7 389 86.6
SalBow3G4284 Salvia bowleyana HOM05D005052 ORTHO05D006226 4.0e-193 678.3 454 77.5
Nitab4.5_0001892g0080 Nicotiana tabacum HOM05D005052 ORTHO05D006226 6.9e-193 677.6 462 75.3
CAN.G1274.31 Capsicum annuum HOM05D005052 ORTHO05D006226 1.2e-192 676.8 462 75.1
Thhalv10004219m.g Eutrema salsugineum HOM05D005052 ORTHO05D006226 5.8e-192 674.5 454 75.3
THA.LOC104821339 Tarenaya hassleriana HOM05D005052 ORTHO05D006226 5.8e-192 674.5 398 83.7
Migut.C00533 Erythranthe guttata HOM05D005052 ORTHO05D006226 1.3e-191 673.3 387 85.5
Sopen02g028370 Solanum pennellii HOM05D005052 ORTHO05D006226 2.9e-191 672.2 418 78.7
Lj4A222T51 Lonicera japonica HOM05D005052 ORTHO05D006226 3.8e-191 671.8 476 75.0
ECA240G3065 Erigeron canadensis HOM05D005052 ORTHO05D006226 6.4e-191 671.0 409 82.4
Solyc02g083590.3 Solanum lycopersicum HOM05D005052 ORTHO05D006226 1.9e-190 669.5 418 78.5
AUR62003338 Chenopodium quinoa HOM05D005052 ORTHO05D006226 2.4e-190 669.1 464 75.0
vmacro22193 Vaccinium macrocarpon HOM05D005052 ORTHO05D006226 3.2e-190 668.7 515 69.5
CARHR281630 Cardamine hirsuta HOM05D005052 ORTHO05D006226 4.2e-190 668.3 455 75.2
AL8G45470 Arabidopsis lyrata HOM05D005052 ORTHO05D006226 5.5e-190 667.9 455 75.8
MBI05_g23388_MAGBIO Magnolia biondii HOM05D005052 ORTHO05D006226 5.5e-190 667.9 460 75.2
HanXRQChr13g0424561 Helianthus annuus HOM05D005052 ORTHO05D006226 1.2e-189 666.8 455 75.8
Peaxi162Scf00328g00523 Petunia axillaris HOM05D005052 ORTHO05D006226 1.2e-189 666.8 392 82.9
Hund16503 Selenicereus undatus HOM05D005052 ORTHO05D006226 1.6e-189 666.4 465 76.1
AUR62029500 Chenopodium quinoa HOM05D005052 ORTHO05D006226 2.1e-189 666.0 467 74.3
SGA_v2.0_scaffold94G28549 Striga asiatica HOM05D005052 ORTHO05D006226 4.6e-189 664.8 394 83.8
Sp2g30570 Schrenkiella parvula HOM05D005052 ORTHO05D006226 6.0e-189 664.5 455 75.2
A09p10150 Brassica napus HOM05D005052 ORTHO05D006226 1.0e-188 663.7 454 75.6
PGSC0003DMG400003582 Solanum tuberosum HOM05D005052 ORTHO05D006226 1.3e-188 663.3 459 74.3
BcaB04g20124 Brassica carinata HOM05D005052 ORTHO05D006226 1.8e-188 662.9 455 74.9
Carub.0008s2837 Capsella rubella HOM05D005052 ORTHO05D006226 5.1e-188 661.4 455 74.9
MSTRG.2728 Avicennia marina HOM05D005052 ORTHO05D006226 6.7e-188 661.0 422 80.1
ATR0712G043 Amborella trichopoda HOM05D005052 ORTHO05D006226 8.7e-188 660.6 415 80.0
AT5G66120 Arabidopsis thaliana HOM05D005052 ORTHO05D006226 1.1e-187 660.2 455 75.4
BcaC04g23113 Brassica carinata HOM05D005052 ORTHO05D006226 1.1e-187 660.2 454 75.1
C09p12030 Brassica napus HOM05D005052 ORTHO05D006226 1.1e-187 660.2 454 75.1
BraA09t36659Z Brassica rapa HOM05D005052 ORTHO05D006226 4.3e-187 658.3 454 74.9
Gohir.A11G173500 Gossypium hirsutum HOM05D005052 ORTHO05D006226 4.3e-187 658.3 439 79.3
DCAR_022909 Daucus carota HOM05D005052 ORTHO05D006226 1.3e-186 656.8 422 78.7
Aa31LG1G14600 Aethionema arabicum HOM05D005052 ORTHO05D006226 2.1e-186 656.0 366 86.3
BolC9t54093H Brassica oleracea HOM05D005052 ORTHO05D006226 4.8e-186 654.8 454 74.9
Gohir.D11G180500 Gossypium hirsutum HOM05D005052 ORTHO05D006226 1.2e-184 650.2 378 85.7
Os09g0539100 Oryza sativa ssp. japonica HOM05D005052 ORTHO05D006226 1.2e-184 650.2 384 83.3
Zm00001eb103800 Zea mays HOM05D005052 ORTHO05D006226 1.7e-183 646.4 450 74.7
HPP92_025909 Vanilla planifolia HOM05D005052 ORTHO05D006226 5.5e-182 641.3 385 81.0
HPP92_025914 Vanilla planifolia HOM05D005052 ORTHO05D006226 7.1e-182 641.0 405 77.5
Aqoxy4G02022 Aquilegia oxysepala HOM05D005052 ORTHO05D006226 1.0e-180 637.1 416 76.7
Ciclev10025711m.g Citrus clementina HOM05D005052 ORTHO05D006226 1.2e-176 623.6 456 72.4
CSS0012363 Camellia sinensis var. sinensis HOM05D005052 ORTHO05D006226 1.4e-174 616.7 328 93.0
Pp3c13_24150 Physcomitrium patens HOM05D005052 ORTHO05D006226 2.5e-171 605.9 396 73.0
SMO228G0049 Selaginella moellendorffii HOM05D005052 ORTHO05D006226 1.3e-167 593.6 364 78.3
Mapoly0031s0094 Marchantia polymorpha HOM05D005052 ORTHO05D006226 5.0e-167 591.7 416 69.5
AagrBONN_evm.TU.Sc2ySwM_340.387 Anthoceros agrestis HOM05D005052 ORTHO05D006226 3.9e-164 582.0 385 71.9
Actinidia28717 Actinidia chinensis HOM05D005052 ORTHO05D006226 9.7e-163 577.4 449 70.8
Zm00001eb331970 Zea mays HOM05D005052 ORTHO05D006226 4.1e-161 572.0 411 73.5
DCAR_004732 Daucus carota HOM05D005052 ORTHO05D006226 6.1e-157 558.1 372 73.9
Lsat_1_v5_gn_3_125660 Lactuca sativa HOM05D005052 ORTHO05D006226 6.7e-156 554.7 391 74.7
CBR_g10969 Chara braunii HOM05D005052 ORTHO05D006226 2.8e-154 549.3 389 69.9
Actinidia17421 Actinidia chinensis HOM05D005052 ORTHO05D006226 5.5e-150 535.0 287 90.9
EL10Ac6g15523 Beta vulgaris HOM05D005052 ORTHO05D006226 2.3e-148 529.6 510 59.0
CDE04G1415 Ceratophyllum demersum HOM05D005052 ORTHO05D006226 3.1e-145 519.2 287 87.1
Cre08.g368950 Chlamydomonas reinhardtii HOM05D005052 ORTHO05D006226 4.1e-145 518.8 373 68.4
Manes.02G107200 Manihot esculenta HOM05D005052 ORTHO05D006226 9.4e-142 507.7 348 77.9
MCO01G625 Micromonas commoda HOM05D005052 ORTHO05D006226 4.8e-138 495.4 424 58.5
Hma1.2p1_0315F.1_g122330 Hydrangea macrophylla HOM05D005052 ORTHO05D006226 9.1e-137 491.1 376 69.7
Ah.03g149130 Amaranthus hybridus HOM05D005052 ORTHO05D006226 1.8e-132 476.9 349 74.2
PRCOL_00000314 Prasinoderma coloniale HOM05D005052 ORTHO05D006226 3.7e-130 469.2 378 61.1
SEGI_14262 Sequoiadendron giganteum HOM05D005052 ORTHO05D006226 7.0e-121 438.3 280 76.4
Dinv33661 Davidia involucrata HOM05D005052 ORTHO05D006226 7.8e-120 434.9 233 91.8
Hma1.2p1_2620F.1_g325580 Hydrangea macrophylla HOM05D005052 ORTHO05D006226 1.2e-117 427.6 450 56.2
CDE02G2775 Ceratophyllum demersum HOM05D005052 ORTHO05D006226 2.6e-115 419.9 314 69.1
SEGI_08539 Sequoiadendron giganteum HOM05D005052 ORTHO05D006226 1.1e-97 361.3 224 76.8
CDE02G1558 Ceratophyllum demersum HOM05D005052 ORTHO05D006226 2.9e-90 336.7 257 68.9
SGA_v2.0_scaffold273G46395 Striga asiatica HOM05D005052 ORTHO05D006226 2.7e-80 303.5 202 71.3
Lsat_1_v5_gn_0_46241 Lactuca sativa HOM05D005052 ORTHO05D006226 6.7e-79 298.9 299 48.8
TPR.G6592 Trifolium pratense HOM05D005052 ORTHO05D006226 9.6e-78 295.0 273 60.8
RcHm_v2.0_Chr2g0099011 Rosa chinensis HOM05D005052 ORTHO05D006226 4.0e-76 289.7 246 62.6
unitig_699.g19702 Utricularia gibba HOM05D005052 ORTHO05D006226 1.6e-72 277.7 161 83.9
Dinv33662 Davidia involucrata HOM05D005052 ORTHO05D006226 1.3e-71 274.6 209 73.2
Haze_27270 Corylus avellana HOM05D005052 ORTHO05D006226 1.3e-69 268.1 355 43.1
Cfa024476 Carpinus fangiana HOM05D003566 ORTHO05D126353 4.3e-54 216.5 336 42.0
unitig_699.g19703 Utricularia gibba HOM05D005052 ORTHO05D006226 4.5e-51 206.5 178 61.8
Rhsim07G0143100 Rhododendron simsii HOM05D005052 ORTHO05D006226 1.6e-48 198.0 184 62.0
SEGI_40904 Sequoiadendron giganteum HOM05D005052 ORTHO05D006226 4.8e-45 186.4 113 77.0
Ah.03g149140 Amaranthus hybridus HOM05D000441 ORTHO05D000340 1.3e-29 135.2 77 81.8
SEGI_17140 Sequoiadendron giganteum HOM05D005052 ORTHO05D006226 3.7e-29 133.7 83 73.5
SEGI_34573 Sequoiadendron giganteum HOM05D005052 ORTHO05D006226 3.7e-29 133.7 83 73.5
MD02G1126200 Malus domestica HOM05D005052 ORTHO05D006226 1.8e-28 131.3 129 58.9
MD14G1099300 Malus domestica HOM05D005052 ORTHO05D006226 1.8e-28 131.3 129 58.9
Rhsim07G0135500 Rhododendron simsii HOM05D005052 ORTHO05D006226 5.7e-22 109.8 73 71.2
DCAR_004721 Daucus carota HOM05D005052 ORTHO05D006226 1.3e-21 108.6 113 53.1
SEGI_22853 Sequoiadendron giganteum HOM05D005052 ORTHO05D006226 2.2e-21 107.8 69 71.0
CDE04G1456 Ceratophyllum demersum HOM05D005052 ORTHO05D006226 3.1e-20 104.0 75 69.3
Rhsim07G0135600 Rhododendron simsii HOM05D005052 ORTHO05D339393 5.9e-11 73.2 37 89.2
CSS0040013 Camellia sinensis var. sinensis HOM05D005052 ORTHO05D006226 3.6e-08 63.9 126 42.1


User provided reference genes

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