Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01018456001 Vitis vinifera HOM05D005963 ORTHO05D006869 0.0e+00 1869.0 960 100.0
QL12p038851 Quercus lobata HOM05D005963 ORTHO05D006869 0.0e+00 1464.9 940 78.9
Duzib205G1443 Durio zibethinus HOM05D005963 ORTHO05D006869 0.0e+00 1451.8 940 77.1
Thecc.03G166100 Theobroma cacao HOM05D005963 ORTHO05D006869 0.0e+00 1447.2 936 77.4
CSS0028871 Camellia sinensis var. sinensis HOM05D005963 ORTHO05D006869 0.0e+00 1430.2 939 77.0
Nn6g34339 Nelumbo nucifera HOM05D005963 ORTHO05D006869 0.0e+00 1413.7 948 75.2
Duzib068G1175 Durio zibethinus HOM05D005963 ORTHO05D006869 0.0e+00 1413.3 958 73.8
Ciclev10004233m.g Citrus clementina HOM05D005963 ORTHO05D006869 0.0e+00 1393.6 951 74.9
CiPaw.03G099400 Carya illinoinensis HOM05D005963 ORTHO05D006869 0.0e+00 1389.8 929 74.9
Potri.012G132300 Populus trichocarpa HOM05D005963 ORTHO05D006869 0.0e+00 1387.5 947 73.9
Haze_13797 Corylus avellana HOM05D005963 ORTHO05D006869 0.0e+00 1384.4 925 75.5
CAN.G1257.1 Capsicum annuum HOM05D005963 ORTHO05D006869 0.0e+00 1372.8 943 73.5
Peaxi162Scf00192g00613 Petunia axillaris HOM05D005963 ORTHO05D006869 0.0e+00 1371.7 922 75.1
Cpa.g.sc4.183 Carica papaya HOM05D005963 ORTHO05D006869 0.0e+00 1369.4 952 74.2
TAR374G1343 Trochodendron aralioides HOM05D005963 ORTHO05D006869 0.0e+00 1355.9 937 72.8
Hma1.2p1_0488F.1_g163860 Hydrangea macrophylla HOM05D005963 ORTHO05D006869 0.0e+00 1354.0 935 73.5
Nitab4.5_0000124g0020 Nicotiana tabacum HOM05D005963 ORTHO05D006869 0.0e+00 1344.7 958 71.5
Oeu030146.1 Olea europaea HOM05D005963 ORTHO05D006869 0.0e+00 1343.2 952 71.4
Oeu030148.1 Olea europaea HOM05D005963 ORTHO05D006869 0.0e+00 1342.8 952 71.4
CiPaw.04G064800 Carya illinoinensis HOM05D005963 ORTHO05D006869 0.0e+00 1342.4 937 73.5
Manes.06G140900 Manihot esculenta HOM05D005963 ORTHO05D006869 0.0e+00 1334.3 950 71.2
Prupe.2G286400 Prunus persica HOM05D005963 ORTHO05D006869 0.0e+00 1330.9 960 73.2
Actinidia25056 Actinidia chinensis HOM05D005963 ORTHO05D006869 0.0e+00 1324.7 926 71.7
Actinidia13537 Actinidia chinensis HOM05D005963 ORTHO05D006869 0.0e+00 1321.2 917 72.4
Rhsim03G0174100 Rhododendron simsii HOM05D005963 ORTHO05D006869 0.0e+00 1320.1 936 71.6
PGR142G0011 Punica granatum HOM05D005963 ORTHO05D006869 0.0e+00 1313.1 947 71.4
Solyc03g006900.2 Solanum lycopersicum HOM05D005963 ORTHO05D006869 0.0e+00 1310.8 946 70.8
Sopen03g002900 Solanum pennellii HOM05D005963 ORTHO05D006869 0.0e+00 1310.8 956 70.2
Nitab4.5_0000371g0030 Nicotiana tabacum HOM05D005963 ORTHO05D006869 0.0e+00 1297.7 937 70.8
TWI14G0479 Tripterygium wilfordii HOM05D005963 ORTHO05D006869 0.0e+00 1295.4 948 71.1
MD01G1192000 Malus domestica HOM05D005963 ORTHO05D006869 0.0e+00 1287.7 966 70.1
Sabra12G0099600 Salix brachista HOM05D005963 ORTHO05D006869 0.0e+00 1285.8 919 71.8
MD00G1003400 Malus domestica HOM05D005963 ORTHO05D006869 0.0e+00 1282.3 965 70.5
SHI13839 Sapria himalayana HOM05D005963 ORTHO05D006869 0.0e+00 1256.9 951 68.5
Eucgr.K00183 Eucalyptus grandis HOM05D005963 ORTHO05D006869 0.0e+00 1252.7 959 67.7
Aqoxy7G00515 Aquilegia oxysepala HOM05D005963 ORTHO05D006869 0.0e+00 1242.3 920 69.8
RcHm_v2.0_Chr1g0376121 Rosa chinensis HOM05D005963 ORTHO05D006869 0.0e+00 1219.5 959 67.5
Dinv35132 Davidia involucrata HOM05D005963 ORTHO05D006869 0.0e+00 1201.8 931 67.9
VMungo0464G1720 Vigna mungo HOM05D005963 ORTHO05D006869 0.0e+00 1200.3 940 67.1
FAN06G4856 Fragaria x ananassa HOM05D005963 ORTHO05D006869 0.0e+00 1192.9 950 65.5
FvH4_7g28640 Fragaria vesca HOM05D005963 ORTHO05D006869 0.0e+00 1190.6 946 65.5
FAN06G2356 Fragaria x ananassa HOM05D005963 ORTHO05D006869 0.0e+00 1189.1 953 65.1
Gorai.001G047400 Gossypium raimondii HOM05D005963 ORTHO05D006869 0.0e+00 1184.5 932 65.5
ECA232G0907 Erigeron canadensis HOM05D005963 ORTHO05D006869 0.0e+00 1177.2 948 65.5
FAN01G2646 Fragaria x ananassa HOM05D005963 ORTHO05D006869 0.0e+00 1176.8 946 64.8
FAN03G0518 Fragaria x ananassa HOM05D005963 ORTHO05D006869 0.0e+00 1176.8 950 64.4
Phvul.004G124000 Phaseolus vulgaris HOM05D005963 ORTHO05D006869 0.0e+00 1174.5 941 65.8
DCAR_018136 Daucus carota HOM05D005963 ORTHO05D006869 0.0e+00 1157.5 958 63.9
Gorai.008G282200 Gossypium raimondii HOM05D005963 ORTHO05D006869 0.0e+00 1150.2 912 65.5
Gohir.D12G263300 Gossypium hirsutum HOM05D005963 ORTHO05D006869 0.0e+00 1149.0 912 65.5
Lsat_1_v5_gn_9_53261 Lactuca sativa HOM05D005963 ORTHO05D006869 0.0e+00 1149.0 953 64.0
HanXRQChr15g0486261 Helianthus annuus HOM05D005963 ORTHO05D006869 0.0e+00 1145.6 955 63.5
Gohir.A12G262600 Gossypium hirsutum HOM05D005963 ORTHO05D006869 0.0e+00 1141.7 836 69.6
Glyma.09G149700 Glycine max HOM05D005963 ORTHO05D006869 0.0e+00 1140.9 937 64.4
Dinv28513 Davidia involucrata HOM05D005963 ORTHO05D006869 0.0e+00 1140.6 949 64.6
vmacro22547 Vaccinium macrocarpon HOM05D005963 ORTHO05D006869 0.0e+00 1125.5 829 67.7
FAN10G3242 Fragaria x ananassa HOM05D005963 ORTHO05D006869 0.0e+00 1122.1 945 63.6
HanXRQChr14g0433491 Helianthus annuus HOM05D005963 ORTHO05D006869 0.0e+00 1120.1 937 63.6
Lj8C34G2 Lonicera japonica HOM05D005963 ORTHO05D006869 0.0e+00 1112.8 896 65.1
Lj2g0022710 Lotus japonicus HOM05D005963 ORTHO05D006869 0.0e+00 1109.4 944 62.3
Medtr0007s0220 Medicago truncatula HOM05D005963 ORTHO05D006869 0.0e+00 1107.0 945 62.5
PSO782G2761 Papaver somniferum HOM05D005963 ORTHO05D006869 0.0e+00 1101.3 969 60.8
Gohir.A07G040200 Gossypium hirsutum HOM05D005963 ORTHO05D006869 0.0e+00 1099.0 674 77.4
arahy.Tifrunner.gnm1.ann1.G2RQNR Arachis hypogaea HOM05D005963 ORTHO05D006869 0.0e+00 1090.5 969 61.9
PSO478G0110 Papaver somniferum HOM05D005963 ORTHO05D006869 0.0e+00 1089.7 953 61.3
Lalb_Chr19g0131211 Lupinus albus HOM05D005963 ORTHO05D006869 0.0e+00 1082.0 953 61.7
arahy.Tifrunner.gnm1.ann1.R4K09I Arachis hypogaea HOM05D005963 ORTHO05D006869 0.0e+00 1079.3 951 61.9
COL.COLO4_14220 Corchorus olitorius HOM05D005963 ORTHO05D006869 1.7e-310 1069.3 816 66.7
MELO3C006856.2 Cucumis melo HOM05D005963 ORTHO05D006869 2.2e-310 1068.9 951 58.4
Psat1g106960 Pisum sativum HOM05D005963 ORTHO05D006869 9.4e-309 1063.5 961 59.7
Sed0018627 Sechium edule HOM05D005963 ORTHO05D006869 3.7e-305 1051.6 933 59.3
TPR.G26590 Trifolium pratense HOM05D005963 ORTHO05D006869 6.3e-305 1050.8 945 59.9
CsaV3_3G016590 Cucumis sativus L. HOM05D005963 ORTHO05D006869 2.2e-297 1025.8 951 57.1
ClCG05G007670 Citrullus lanatus HOM05D005963 ORTHO05D006869 1.2e-290 1003.4 940 56.2
THA.LOC104825083 Tarenaya hassleriana HOM05D005963 ORTHO05D006869 1.2e-284 983.4 875 58.2
AL8G26090 Arabidopsis lyrata HOM05D005963 ORTHO05D006869 9.1e-280 967.2 962 54.7
Carub.0008s1182 Capsella rubella HOM05D005963 ORTHO05D006869 2.0e-279 966.1 964 55.1
CARHR264680 Cardamine hirsuta HOM05D005963 ORTHO05D006869 1.5e-277 959.9 937 55.2
Thhalv10015853m.g Eutrema salsugineum HOM05D005963 ORTHO05D006869 1.9e-277 959.5 935 56.5
A10p09630 Brassica napus HOM05D005963 ORTHO05D006869 2.1e-276 956.1 931 56.3
BraA10t43044Z Brassica rapa HOM05D005963 ORTHO05D006869 2.1e-276 956.1 931 56.3
EL10Ac3g05753 Beta vulgaris HOM05D005963 ORTHO05D006869 6.1e-276 954.5 842 59.1
BolC9t56999H Brassica oleracea HOM05D005963 ORTHO05D006869 6.8e-275 951.0 929 56.1
EL10Ac7g16401 Beta vulgaris HOM05D005963 ORTHO05D006869 2.0e-271 939.5 946 55.7
Sp6g14050 Schrenkiella parvula HOM05D005963 ORTHO05D006869 5.9e-271 937.9 970 54.2
AT5G51800 Arabidopsis thaliana HOM05D005963 ORTHO05D006869 1.0e-270 937.2 966 53.2
A02p12120 Brassica napus HOM05D005963 ORTHO05D006869 1.6e-268 929.9 934 55.4
BraA02t06276Z Brassica rapa HOM05D005963 ORTHO05D006869 1.6e-268 929.9 934 55.4
FAN03G0902 Fragaria x ananassa HOM05D005963 ORTHO05D006869 1.7e-265 919.8 761 61.5
AUR62016071 Chenopodium quinoa HOM05D005963 ORTHO05D006869 7.0e-264 914.4 917 55.9
BcaC04g20635 Brassica carinata HOM05D005963 ORTHO05D006869 1.3e-262 910.2 928 54.3
BcaB08g35527 Brassica carinata HOM05D005963 ORTHO05D006869 3.9e-262 908.7 955 52.9
BolC2t08150H Brassica oleracea HOM05D005963 ORTHO05D006869 4.3e-261 905.2 934 53.6
C02p20220 Brassica napus HOM05D005963 ORTHO05D006869 7.3e-261 904.4 934 53.5
Ah.13g067680 Amaranthus hybridus HOM05D005963 ORTHO05D006869 2.0e-258 896.3 958 52.4
PGSC0003DMG400007557 Solanum tuberosum HOM05D005963 ORTHO05D006869 4.9e-257 891.7 537 76.4
Gohir.D07G044301 Gossypium hirsutum HOM05D005963 ORTHO05D006869 6.4e-257 891.3 527 78.6
Cc02_g03640 Coffea canephora HOM05D005963 ORTHO05D006869 6.2e-252 874.8 541 75.8
SEGI_31852 Sequoiadendron giganteum HOM05D005963 ORTHO05D006869 4.0e-251 872.1 810 55.3
AUR62021279 Chenopodium quinoa HOM05D005963 ORTHO05D006869 9.9e-250 867.5 755 60.3
BcaC03g14575 Brassica carinata HOM05D005963 ORTHO05D006869 3.0e-246 855.9 934 51.7
Sc25g0000220 Simmondsia chinensis HOM05D005963 ORTHO05D006869 5.1e-238 828.6 963 49.9
CDE08G0260 Ceratophyllum demersum HOM05D005963 ORTHO05D006869 1.0e-222 777.7 690 57.2
Hund04676 Selenicereus undatus HOM05D005963 ORTHO05D006869 2.2e-209 733.4 640 59.4
Atru.chr1.580 Acer truncatum HOM05D005963 ORTHO05D006869 1.8e-171 607.4 395 73.9
C09p41240 Brassica napus HOM05D005963 ORTHO05D006869 2.9e-161 573.5 621 54.3
ATR0661G117 Amborella trichopoda HOM05D005963 ORTHO05D006869 2.6e-157 560.5 466 57.3
Glyma.16G201100 Glycine max HOM05D005963 ORTHO05D006869 5.2e-142 509.6 462 64.9
Aa31LG3G8240 Aethionema arabicum HOM05D005963 ORTHO05D006869 1.3e-129 468.4 407 56.0
Atru.chr1.581 Acer truncatum HOM05D005963 ORTHO05D006869 5.4e-107 393.3 389 63.8
ATR0661G452 Amborella trichopoda HOM05D005963 ORTHO05D006869 2.5e-91 341.3 413 48.4
PGSC0003DMG400007558 Solanum tuberosum HOM05D005963 ORTHO05D006869 1.0e-81 309.3 312 50.6
Ca_05417_v3 Cicer arietinum L. HOM05D005963 ORTHO05D006869 7.0e-62 243.4 739 28.6
Ca_30119_v3 Cicer arietinum L. HOM05D005963 ORTHO05D006869 2.7e-53 214.9 277 48.4
MBI05_g12587_MAGBIO Magnolia biondii HOM05D005963 ORTHO05D006869 1.3e-52 212.6 367 34.3
Pp3c26_6160 Physcomitrium patens HOM05D005963 ORTHO05D006869 2.4e-46 191.8 374 33.4
Pp3c26_6250 Physcomitrium patens HOM05D005963 ORTHO05D006869 2.4e-46 191.8 374 33.4
Pp3c2_90 Physcomitrium patens HOM05D005963 ORTHO05D006869 3.1e-46 191.4 374 32.9
Pp3c18_1570 Physcomitrium patens HOM05D005963 ORTHO05D006869 3.5e-45 188.0 374 32.9
MBI05_g12586_MAGBIO Magnolia biondii HOM05D005963 ORTHO05D006869 4.7e-42 177.6 187 51.3
SMO174G0009 Selaginella moellendorffii HOM05D005963 ORTHO05D006869 9.8e-32 143.3 386 26.9
SMO358G0565 Selaginella moellendorffii HOM05D001046 ORTHO05D007174 3.7e-31 141.4 391 30.2
SMO276G0013 Selaginella moellendorffii HOM05D005963 ORTHO05D006869 4.1e-30 137.9 323 30.3
SMO116G0123 Selaginella moellendorffii HOM05D005963 ORTHO05D006869 2.5e-19 102.1 319 28.8
SMO195G0003 Selaginella moellendorffii HOM05D005963 ORTHO05D006869 3.3e-19 101.7 301 28.6
CDE08G0941 Ceratophyllum demersum HOM05D005963 ORTHO05D006869 6.2e-18 97.4 105 53.3
SMO268G0015 Selaginella moellendorffii HOM05D005963 ORTHO05D006869 5.8e-16 90.9 458 22.3
Cre02.g095117 Chlamydomonas reinhardtii HOM05D010267 ORTHO05D010759 3.5e-13 81.6 350 23.4
MBI05_g12588_MAGBIO Magnolia biondii HOM05D005963 ORTHO05D006869 4.6e-13 81.3 67 65.7
Dinv24731 Davidia involucrata HOM05D005963 ORTHO05D006869 1.1e-11 76.6 63 74.6
Cre01.g041800 Chlamydomonas reinhardtii HOM05D010267 ORTHO05D010759 1.2e-10 73.2 345 22.0
CBR_g38396 Chara braunii HOM05D002537 ORTHO05D002751 1.6e-10 72.8 121 34.7
AagrBONN_evm.TU.Sc2ySwM_117.2839 Anthoceros agrestis HOM05D002537 ORTHO05D006869 3.1e-09 68.6 252 26.2
Cre08.g380452 Chlamydomonas reinhardtii HOM05D010267 ORTHO05D010759 3.1e-09 68.6 297 21.9
Oeu063117.1 Olea europaea HOM05D003725 ORTHO05D004294 1.7e-07 62.8 134 31.3
SMO351G0173 Selaginella moellendorffii HOM05D002537 ORTHO05D002751 1.7e-07 62.8 188 27.7
Lsat_1_v5_gn_5_10240 Lactuca sativa HOM05D002537 ORTHO05D002751 2.9e-07 62.0 138 31.2
Haze_06001 Corylus avellana HOM05D003725 ORTHO05D004294 3.8e-07 61.6 176 27.8
Mapoly0001s0020 Marchantia polymorpha HOM05D002537 ORTHO05D002751 8.4e-07 60.5 138 29.0
Pp3c3_17230 Physcomitrium patens HOM05D004805 ORTHO05D005756 8.4e-07 60.5 182 28.0
Cfa000740 Carpinus fangiana HOM05D003725 ORTHO05D004294 1.1e-06 60.1 175 27.4
Pp3c13_13680 Physcomitrium patens HOM05D004805 ORTHO05D005756 1.1e-06 60.1 141 29.8
AagrBONN_evm.TU.Sc2ySwM_117.2665 Anthoceros agrestis HOM05D003725 ORTHO05D004294 1.4e-06 59.7 199 27.1
Mapoly0086s0081 Marchantia polymorpha HOM05D003725 ORTHO05D004294 1.4e-06 59.7 220 25.5
Oeu000477.1 Olea europaea HOM05D003725 ORTHO05D004294 1.9e-06 59.3 144 29.9
Pp3c12_22800 Physcomitrium patens HOM05D002537 ORTHO05D002751 1.9e-06 59.3 130 28.5
Thecc.02G298200 Theobroma cacao HOM05D003725 ORTHO05D004294 1.9e-06 59.3 165 28.5
Gohir.D01G137000 Gossypium hirsutum HOM05D003725 ORTHO05D004294 2.4e-06 58.9 164 26.8
Gorai.002G169000 Gossypium raimondii HOM05D003725 ORTHO05D004294 2.4e-06 58.9 164 26.8
CBR_g78824 Chara braunii HOM05D000601 ORTHO05D000407 4.2e-06 58.2 115 33.9
Manes.17G092600 Manihot esculenta HOM05D003725 ORTHO05D004294 4.2e-06 58.2 140 28.6
Mapoly0001s0312 Marchantia polymorpha HOM05D029505 ORTHO05D006869 4.2e-06 58.2 129 27.9
Mapoly0065s0047 Marchantia polymorpha HOM05D003725 ORTHO05D004294 4.2e-06 58.2 135 28.9
Nn7g38034 Nelumbo nucifera HOM05D003725 ORTHO05D004294 5.4e-06 57.8 164 25.6
SalBow2G0780 Salvia bowleyana HOM05D002537 ORTHO05D002751 5.4e-06 57.8 178 28.1
unitig_37.g12059 Utricularia gibba HOM05D003725 ORTHO05D004294 5.4e-06 57.8 167 26.9
Aqoxy1G00445 Aquilegia oxysepala HOM05D002537 ORTHO05D002751 7.1e-06 57.4 121 30.6
CBR_g29752 Chara braunii HOM05D000601 ORTHO05D000407 7.1e-06 57.4 113 34.5
CBR_g32206 Chara braunii HOM05D000601 ORTHO05D000407 7.1e-06 57.4 115 36.5
CBR_g70975 Chara braunii HOM05D000601 ORTHO05D000407 7.1e-06 57.4 115 33.9
Gohir.A01G143700 Gossypium hirsutum HOM05D003725 ORTHO05D004294 7.1e-06 57.4 164 26.2
RcHm_v2.0_Chr4g0428941 Rosa chinensis HOM05D002537 ORTHO05D002751 7.1e-06 57.4 148 27.7
ATR0807G251 Amborella trichopoda HOM05D003725 ORTHO05D004294 9.3e-06 57.0 156 28.8
Mapoly0037s0099 Marchantia polymorpha HOM05D029505 ORTHO05D002751 9.3e-06 57.0 117 30.8
Sed0027950 Sechium edule HOM05D002537 ORTHO05D002751 9.3e-06 57.0 121 29.8
Solyc02g030460.2 Solanum lycopersicum HOM05D003725 ORTHO05D004294 9.3e-06 57.0 151 31.1
Sopen02g009780 Solanum pennellii HOM05D003725 ORTHO05D004294 9.3e-06 57.0 151 31.8
PGSC0003DMG400012915 Solanum tuberosum HOM05D003725 ORTHO05D004294 9.3e-06 57.0 147 29.9
unitig_8.g3117 Utricularia gibba HOM05D002537 ORTHO05D002751 9.3e-06 57.0 120 30.0


User provided reference genes

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