Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01018384001 Vitis vinifera HOM05D004886 ORTHO05D005868 2.6e-92 342.0 173 100.0
Hma1.2p1_0021F.1_g014430 Hydrangea macrophylla HOM05D004886 ORTHO05D005868 1.2e-76 290.0 169 83.4
vmacro13553 Vaccinium macrocarpon HOM05D004886 ORTHO05D005868 2.9e-75 285.4 168 85.1
Atru.chr5.18 Acer truncatum HOM05D004886 ORTHO05D005868 8.4e-75 283.9 166 84.9
Ciclev10022551m.g Citrus clementina HOM05D004886 ORTHO05D005868 1.1e-74 283.5 170 84.1
CSS0044670 Camellia sinensis var. sinensis HOM05D004886 ORTHO05D005868 1.9e-74 282.7 176 81.8
Rhsim07G0040800 Rhododendron simsii HOM05D004886 ORTHO05D005868 3.2e-74 282.0 168 83.9
Rhsim07G0041300 Rhododendron simsii HOM05D004886 ORTHO05D005868 3.2e-74 282.0 168 83.9
RhsimUnG0113600 Rhododendron simsii HOM05D004886 ORTHO05D005868 3.2e-74 282.0 168 83.9
VMungo0331G0020 Vigna mungo HOM05D004886 ORTHO05D005868 4.2e-74 281.6 171 82.5
Psat4g216480 Pisum sativum HOM05D004886 ORTHO05D005868 7.1e-74 280.8 172 82.0
Lsat_1_v5_gn_6_101400 Lactuca sativa HOM05D004886 ORTHO05D005868 9.3e-74 280.4 169 82.8
CiPaw.14G014400 Carya illinoinensis HOM05D004886 ORTHO05D005868 1.2e-73 280.0 170 82.9
Glyma.03G100700 Glycine max HOM05D004886 ORTHO05D005868 2.7e-73 278.9 173 81.5
HanXRQChr05g0162431 Helianthus annuus HOM05D004886 ORTHO05D005868 2.7e-73 278.9 169 82.8
Actinidia05803 Actinidia chinensis HOM05D004886 ORTHO05D005868 1.3e-72 276.6 170 81.8
Phvul.010G040200 Phaseolus vulgaris HOM05D004886 ORTHO05D005868 1.3e-72 276.6 171 80.7
Nitab4.5_0001476g0110 Nicotiana tabacum HOM05D004886 ORTHO05D005868 8.7e-72 273.9 172 79.7
Nn1g07674 Nelumbo nucifera HOM05D004886 ORTHO05D005868 1.1e-71 273.5 166 79.5
Oeu002885.1 Olea europaea HOM05D004886 ORTHO05D005868 1.5e-71 273.1 169 80.5
Nitab4.5_0004264g0010 Nicotiana tabacum HOM05D004886 ORTHO05D005868 1.9e-71 272.7 172 79.1
MELO3C022467.2 Cucumis melo HOM05D004886 ORTHO05D005868 3.3e-71 271.9 170 80.0
CiPaw.13G020500 Carya illinoinensis HOM05D004886 ORTHO05D005868 4.3e-71 271.6 171 82.5
TPR.G17348 Trifolium pratense HOM05D004886 ORTHO05D005868 4.3e-71 271.6 179 77.7
ECA246G0884 Erigeron canadensis HOM05D004886 ORTHO05D005868 5.6e-71 271.2 169 80.5
Manes.05G060800 Manihot esculenta HOM05D004886 ORTHO05D005868 7.3e-71 270.8 167 79.6
Gorai.012G082000 Gossypium raimondii HOM05D004886 ORTHO05D005868 9.6e-71 270.4 172 80.2
Potri.014G179500 Populus trichocarpa HOM05D004886 ORTHO05D005868 9.6e-71 270.4 168 81.0
Gohir.A05G333500 Gossypium hirsutum HOM05D004886 ORTHO05D005868 2.8e-70 268.9 172 79.1
Sed0007303 Sechium edule HOM05D004886 ORTHO05D005868 2.8e-70 268.9 170 80.0
COL.COLO4_20817 Corchorus olitorius HOM05D004886 ORTHO05D005868 6.2e-70 267.7 172 77.9
Gohir.D04G073000 Gossypium hirsutum HOM05D004886 ORTHO05D005868 6.2e-70 267.7 172 79.7
Lalb_Chr07g0194931 Lupinus albus HOM05D004886 ORTHO05D005868 8.1e-70 267.3 173 75.7
CANSAT21G0345 Cannabis sativa HOM05D004886 ORTHO05D005868 1.1e-69 266.9 176 77.8
Cc02_g25880 Coffea canephora HOM05D004886 ORTHO05D005868 1.1e-69 266.9 169 78.7
Medtr8g009670 Medicago truncatula HOM05D004886 ORTHO05D005868 1.4e-69 266.5 176 77.3
TAR375G0952 Trochodendron aralioides HOM05D004886 ORTHO05D005868 1.4e-69 266.5 157 81.5
TWI59G0909 Tripterygium wilfordii HOM05D004886 ORTHO05D005868 2.4e-69 265.8 171 78.9
arahy.Tifrunner.gnm1.ann1.FT2T1Y Arachis hypogaea HOM05D004886 ORTHO05D005868 5.3e-69 264.6 172 76.7
MSTRG.28124 Avicennia marina HOM05D004886 ORTHO05D005868 6.9e-69 264.2 169 76.9
Duzib128G0726 Durio zibethinus HOM05D004886 ORTHO05D005868 1.2e-68 263.5 172 79.1
MBI04_g13864_MAGBIO Magnolia biondii HOM05D004886 ORTHO05D005868 2.0e-68 262.7 169 76.3
Sopen01g035180 Solanum pennellii HOM05D004886 ORTHO05D005868 2.6e-68 262.3 170 76.5
Peaxi162Scf01124g00012 Petunia axillaris HOM05D004886 ORTHO05D005868 3.4e-68 261.9 168 76.8
Solyc01g088350.4 Solanum lycopersicum HOM05D004886 ORTHO05D005868 7.6e-68 260.8 170 75.9
MD07G1082600 Malus domestica HOM05D004886 ORTHO05D005868 1.3e-67 260.0 171 76.0
QL04p024857 Quercus lobata HOM05D004886 ORTHO05D005868 1.3e-67 260.0 173 76.3
Hund26556 Selenicereus undatus HOM05D004886 ORTHO05D005868 1.3e-67 260.0 171 73.7
Aqoxy3G02476 Aquilegia oxysepala HOM05D004886 ORTHO05D005868 1.7e-67 259.6 171 73.7
arahy.Tifrunner.gnm1.ann1.U68WY7 Arachis hypogaea HOM05D004886 ORTHO05D005868 1.7e-67 259.6 172 76.2
Cfa011001 Carpinus fangiana HOM05D002067 ORTHO05D001060 2.9e-67 258.8 157 81.5
Prupe.2G110500 Prunus persica HOM05D004886 ORTHO05D005868 3.8e-67 258.5 163 79.8
CsaV3_6G004620 Cucumis sativus L. HOM05D004886 ORTHO05D005868 4.9e-67 258.1 199 69.3
TWI14G0309 Tripterygium wilfordii HOM05D004886 ORTHO05D005868 4.9e-67 258.1 171 75.4
THA.LOC104817165 Tarenaya hassleriana HOM05D004886 ORTHO05D005868 8.4e-67 257.3 165 74.5
RcHm_v2.0_Chr3g0487321 Rosa chinensis HOM05D004886 ORTHO05D005868 1.1e-66 256.9 159 79.9
Thecc.10G000600 Theobroma cacao HOM05D004886 ORTHO05D005868 1.1e-66 256.9 194 71.1
CsaV3_6G021750 Cucumis sativus L. HOM05D004886 ORTHO05D005868 1.4e-66 256.5 199 68.8
CsaV3_6G037000 Cucumis sativus L. HOM05D004886 ORTHO05D005868 1.4e-66 256.5 199 68.8
FAN23G1419 Fragaria x ananassa HOM05D004886 ORTHO05D005868 2.4e-66 255.8 159 78.6
FAN28G1372 Fragaria x ananassa HOM05D004886 ORTHO05D005868 2.4e-66 255.8 159 79.2
Prupe.3G009000 Prunus persica HOM05D004886 ORTHO05D005868 2.4e-66 255.8 169 76.9
Lj3g0025670 Lotus japonicus HOM05D004886 ORTHO05D005868 3.2e-66 255.4 171 77.2
PSO782G3769 Papaver somniferum HOM05D004886 ORTHO05D005868 3.2e-66 255.4 171 73.7
CAN.G74.36 Capsicum annuum HOM05D004886 ORTHO05D005868 4.2e-66 255.0 168 74.4
Migut.N01703 Erythranthe guttata HOM05D004886 ORTHO05D005868 4.2e-66 255.0 170 75.3
MD09G1285000 Malus domestica HOM05D004886 ORTHO05D005868 5.4e-66 254.6 180 73.3
AT2G44525 Arabidopsis thaliana HOM05D004886 ORTHO05D005868 7.1e-66 254.2 169 72.8
AL4G43550 Arabidopsis lyrata HOM05D004886 ORTHO05D005868 9.3e-66 253.8 169 72.8
Aa31LG1G26120 Aethionema arabicum HOM05D004886 ORTHO05D005868 1.2e-65 253.4 169 71.6
FAN26G2919 Fragaria x ananassa HOM05D004886 ORTHO05D005868 1.2e-65 253.4 159 78.0
FvH4_1g27010 Fragaria vesca HOM05D004886 ORTHO05D005868 1.6e-65 253.1 159 78.0
SalBow4G2359 Salvia bowleyana HOM05D004886 ORTHO05D005868 2.1e-65 252.7 167 76.6
EL10Ac8g19580 Beta vulgaris HOM05D004886 ORTHO05D005868 4.6e-65 251.5 171 73.1
A04p01810 Brassica napus HOM05D004886 ORTHO05D005868 4.6e-65 251.5 169 72.2
BraA04t15905Z Brassica rapa HOM05D004886 ORTHO05D005868 4.6e-65 251.5 169 72.2
Carub.0004s2709 Capsella rubella HOM05D004886 ORTHO05D005868 4.6e-65 251.5 169 71.6
Thhalv10006276m.g Eutrema salsugineum HOM05D004886 ORTHO05D005868 4.6e-65 251.5 169 71.6
Thhalv10001659m.g Eutrema salsugineum HOM05D004886 ORTHO05D005868 6.0e-65 251.1 169 71.6
Sp5g03060 Schrenkiella parvula HOM05D004886 ORTHO05D005868 6.0e-65 251.1 169 72.2
DCAR_015764 Daucus carota HOM05D004886 ORTHO05D005868 7.9e-65 250.8 203 65.0
Sp4g26620 Schrenkiella parvula HOM05D004886 ORTHO05D005868 7.9e-65 250.8 169 71.6
Eucgr.D01136 Eucalyptus grandis HOM05D004886 ORTHO05D005868 1.0e-64 250.4 172 73.3
BcaC02g12300 Brassica carinata HOM05D004886 ORTHO05D005868 1.8e-64 249.6 169 71.6
C04p05420 Brassica napus HOM05D004886 ORTHO05D005868 1.8e-64 249.6 169 71.6
CARHR139740 Cardamine hirsuta HOM05D004886 ORTHO05D005868 1.8e-64 249.6 169 71.0
PSO063G1771 Papaver somniferum HOM05D004886 ORTHO05D005868 1.8e-64 249.6 171 71.9
BraA05t19444Z Brassica rapa HOM05D004886 ORTHO05D005868 3.0e-64 248.8 169 70.4
BcaB02g08189 Brassica carinata HOM05D004886 ORTHO05D005868 3.9e-64 248.4 169 71.0
BolC4t22182H Brassica oleracea HOM05D004886 ORTHO05D005868 3.9e-64 248.4 169 71.0
A05p04680 Brassica napus HOM05D004886 ORTHO05D005868 6.7e-64 247.7 169 69.8
BcaB02g08829 Brassica carinata HOM05D004886 ORTHO05D005868 8.7e-64 247.3 169 70.4
AUR62034033 Chenopodium quinoa HOM05D004886 ORTHO05D005868 1.1e-63 246.9 177 71.2
AT3G60150 Arabidopsis thaliana HOM05D004886 ORTHO05D005868 3.3e-63 245.4 169 70.4
unitig_85.g27219 Utricularia gibba HOM05D004886 ORTHO05D005868 9.6e-63 243.8 170 71.2
PGR044G2350 Punica granatum HOM05D004886 ORTHO05D005868 1.3e-62 243.4 171 75.4
FAN19G1058 Fragaria x ananassa HOM05D004886 ORTHO05D005868 2.8e-62 242.3 159 76.7
HPP92_003510 Vanilla planifolia HOM05D004886 ORTHO05D005868 3.7e-62 241.9 166 69.9
C04p32550 Brassica napus HOM05D004886 ORTHO05D005868 6.2e-62 241.1 162 71.6
BcaC02g10116 Brassica carinata HOM05D004886 ORTHO05D005868 1.1e-61 240.4 162 71.6
BolC4t24818H Brassica oleracea HOM05D004886 ORTHO05D005868 1.1e-61 240.4 162 71.6
Haze_02935 Corylus avellana HOM05D004886 ORTHO05D005868 1.1e-61 240.4 174 72.4
Dinv44001 Davidia involucrata HOM05D004886 ORTHO05D005868 4.0e-61 238.4 139 81.3
vmacro21096 Vaccinium macrocarpon HOM05D004886 ORTHO05D005868 6.9e-61 237.7 217 61.8
Carub.0005s2688 Capsella rubella HOM05D004886 ORTHO05D005868 9.0e-61 237.3 170 68.8
Zm00001eb024270 Zea mays HOM05D004886 ORTHO05D005868 3.4e-60 235.3 167 68.9
Sabra14G0137800 Salix brachista HOM05D004886 ORTHO05D005868 2.5e-58 229.2 261 51.3
Zm00001eb390620 Zea mays HOM05D004886 ORTHO05D005868 2.5e-58 229.2 167 67.1
CsaV3_6G006530 Cucumis sativus L. HOM05D004886 ORTHO05D005868 6.0e-57 224.6 137 80.3
CDE11G0764 Ceratophyllum demersum HOM05D004886 ORTHO05D005868 1.0e-56 223.8 162 64.8
SGA_v2.0_scaffold77G25231 Striga asiatica HOM05D000012 ORTHO05D001060 1.3e-56 223.4 225 54.2
CsaV3_UNG176370 Cucumis sativus L. HOM05D004886 ORTHO05D005868 3.0e-56 222.2 208 59.6
Sed0018381 Sechium edule HOM05D004886 ORTHO05D005868 3.3e-55 218.8 184 65.8
Lj9C547T8 Lonicera japonica HOM05D004886 ORTHO05D005868 4.3e-55 218.4 186 66.7
Actinidia30969 Actinidia chinensis HOM05D004886 ORTHO05D005868 1.1e-50 203.8 118 82.2
Ah.09g232340 Amaranthus hybridus HOM05D004886 ORTHO05D005868 2.7e-49 199.1 172 62.8
HPP92_003514 Vanilla planifolia HOM05D004886 ORTHO05D005868 6.3e-46 188.0 166 57.2
ClCG06G000740 Citrullus lanatus HOM05D004886 ORTHO05D005868 1.1e-45 187.2 170 62.4
CAN.G1480.6 Capsicum annuum HOM05D004886 ORTHO05D005868 5.3e-45 184.9 110 77.3
SHI13674 Sapria himalayana HOM05D004886 ORTHO05D005868 1.1e-42 177.2 113 73.5
Nn1g07677 Nelumbo nucifera HOM05D004886 ORTHO05D005868 6.1e-41 171.4 105 77.1
Dinv43568 Davidia involucrata HOM05D004886 ORTHO05D005868 2.5e-39 166.0 96 82.3
Sabra14G0139700 Salix brachista HOM05D004886 ORTHO05D005868 2.2e-38 162.9 109 73.4
Cpa.g.sc587.3 Carica papaya HOM05D004886 ORTHO05D005868 1.4e-37 160.2 107 73.8
Pp3c12_4990 Physcomitrium patens HOM05D004886 ORTHO05D005868 4.5e-36 155.2 139 51.8
Sc23g0004110 Simmondsia chinensis HOM05D004886 ORTHO05D005868 1.4e-34 150.2 119 65.5
SGA_v2.0_scaffold95G28731 Striga asiatica HOM05D004886 ORTHO05D005868 5.5e-34 148.3 113 61.9
Mapoly0033s0133 Marchantia polymorpha HOM05D004886 ORTHO05D005868 3.6e-33 145.6 135 48.9
Aa31LG10G14300 Aethionema arabicum HOM05D004886 ORTHO05D005868 5.1e-32 141.7 116 64.7
Os10g0571100 Oryza sativa ssp. japonica HOM05D004886 ORTHO05D005868 5.7e-31 138.3 106 64.2
AUR62038597 Chenopodium quinoa HOM05D004886 ORTHO05D005868 2.0e-28 129.8 100 65.0
MD04G1140000 Malus domestica HOM05D004886 ORTHO05D005868 7.7e-28 127.9 103 65.0
BraA05t19447Z Brassica rapa HOM05D004886 ORTHO05D005868 3.6e-25 119.0 79 69.6
BraA05t19448Z Brassica rapa HOM05D004886 ORTHO05D005868 3.6e-25 119.0 79 69.6
CARHR170460 Cardamine hirsuta HOM05D004886 ORTHO05D005868 1.3e-22 110.5 82 69.5
Sabra14G0139800 Salix brachista HOM05D004886 ORTHO05D005868 1.3e-22 110.5 61 86.9
AagrBONN_evm.TU.Sc2ySwM_344.1568 Anthoceros agrestis HOM05D004886 ORTHO05D005868 3.7e-22 109.0 112 39.3
CsaV3_5G024660 Cucumis sativus L. HOM05D004886 ORTHO05D005868 3.7e-22 109.0 114 54.4
Os03g0590700 Oryza sativa ssp. japonica HOM05D004886 ORTHO05D005868 8.2e-22 107.8 62 83.9
Cre12.g496800 Chlamydomonas reinhardtii HOM05D004886 ORTHO05D005868 1.1e-21 107.5 110 41.8
Cpa.g.c35192.2 Carica papaya HOM05D004886 ORTHO05D005868 7.0e-21 104.8 61 82.0
CsaV3_3G022410 Cucumis sativus L. HOM05D004886 ORTHO05D005868 3.5e-20 102.4 114 51.8
A05p04700 Brassica napus HOM05D004886 ORTHO05D005868 5.0e-19 98.6 63 73.0
SEGI_24442 Sequoiadendron giganteum HOM05D004886 ORTHO05D005868 8.5e-19 97.8 82 54.9
SMO364G0857 Selaginella moellendorffii HOM05D004886 ORTHO05D005868 2.5e-18 96.3 104 43.3
ATR0049G020 Amborella trichopoda HOM05D004886 ORTHO05D005868 4.2e-18 95.5 62 72.6
MCO06G183 Micromonas commoda HOM05D004886 ORTHO05D005868 4.0e-16 89.0 106 39.6
PRCOL_00001209 Prasinoderma coloniale HOM05D004886 ORTHO05D005868 3.4e-15 85.9 136 36.8
FAN10G0867 Fragaria x ananassa HOM05D004886 ORTHO05D005868 6.3e-14 81.6 104 49.0
Cc04_g01570 Coffea canephora HOM05D004886 ORTHO05D005868 8.3e-14 81.3 50 76.0
SalBow2G0716 Salvia bowleyana HOM05D000282 ORTHO05D000272 9.8e-07 57.8 32 87.5


User provided reference genes

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