Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01018352001 Vitis vinifera HOM05D005488 ORTHO05D006568 2.8e-70 268.5 135 100.0
Oeu012019.1 Olea europaea HOM05D002442 ORTHO05D006568 1.5e-55 219.5 136 80.9
Solyc01g088610.4 Solanum lycopersicum HOM05D005488 ORTHO05D006568 5.8e-55 217.6 136 77.9
PGSC0003DMG400001718 Solanum tuberosum HOM05D005488 ORTHO05D006568 5.8e-55 217.6 136 77.9
Cfa011024 Carpinus fangiana HOM05D005488 ORTHO05D006568 9.8e-55 216.9 136 80.1
CiPaw.14G016900 Carya illinoinensis HOM05D005488 ORTHO05D006568 2.2e-54 215.7 137 79.6
Prupe.2G116500 Prunus persica HOM05D005488 ORTHO05D006568 8.3e-54 213.8 137 80.3
Sopen01g035460 Solanum pennellii HOM05D005488 ORTHO05D006568 1.1e-53 213.4 136 76.5
Haze_02901 Corylus avellana HOM05D005488 ORTHO05D006568 1.9e-53 212.6 133 79.7
Manes.05G058400 Manihot esculenta HOM05D005488 ORTHO05D006568 3.2e-53 211.8 136 77.2
CiPaw.13G022100 Carya illinoinensis HOM05D005488 ORTHO05D006568 5.4e-53 211.1 136 77.9
FvH4_7g08830 Fragaria vesca HOM05D005488 ORTHO05D006568 5.4e-53 211.1 137 78.1
FAN06G3564 Fragaria x ananassa HOM05D005488 ORTHO05D006568 5.4e-53 211.1 137 78.1
RcHm_v2.0_Chr1g0344251 Rosa chinensis HOM05D005488 ORTHO05D006568 7.0e-53 210.7 137 78.8
Nitab4.5_0004088g0020 Nicotiana tabacum HOM05D005488 ORTHO05D006568 9.2e-53 210.3 136 75.0
Oeu034855.1 Olea europaea HOM05D005488 ORTHO05D006568 9.2e-53 210.3 136 77.2
Nn6g33696 Nelumbo nucifera HOM05D005488 ORTHO05D006568 1.2e-52 209.9 136 77.2
FAN01G0908 Fragaria x ananassa HOM05D005488 ORTHO05D006568 1.6e-52 209.5 137 77.4
MD02G1223400 Malus domestica HOM05D005488 ORTHO05D006568 1.6e-52 209.5 138 79.0
Nitab4.5_0005064g0040 Nicotiana tabacum HOM05D005488 ORTHO05D006568 1.6e-52 209.5 136 75.0
EL10Ac1g00715 Beta vulgaris HOM05D005488 ORTHO05D006568 2.0e-52 209.1 137 78.1
CAN.G756.18 Capsicum annuum HOM05D005488 ORTHO05D006568 2.0e-52 209.1 136 74.3
MD07G1091300 Malus domestica HOM05D005488 ORTHO05D006568 2.0e-52 209.1 138 76.8
AUR62013788 Chenopodium quinoa HOM05D005488 ORTHO05D006568 6.0e-52 207.6 138 77.5
FAN03G1834 Fragaria x ananassa HOM05D005488 ORTHO05D006568 6.0e-52 207.6 137 78.1
FAN10G0732 Fragaria x ananassa HOM05D005488 ORTHO05D006568 6.0e-52 207.6 137 77.4
Gohir.D08G161700 Gossypium hirsutum HOM05D005488 ORTHO05D006568 6.0e-52 207.6 136 77.2
CSS0036750 Camellia sinensis var. sinensis HOM05D005488 ORTHO05D006568 7.8e-52 207.2 137 77.4
Potri.014G044300 Populus trichocarpa HOM05D005488 ORTHO05D006568 7.8e-52 207.2 139 77.0
Atru.chr5.75 Acer truncatum HOM05D005488 ORTHO05D006568 1.3e-51 206.5 137 75.2
FAN10G4236 Fragaria x ananassa HOM05D005488 ORTHO05D006568 1.3e-51 206.5 137 77.4
PSO063G2958 Papaver somniferum HOM05D005488 ORTHO05D006568 3.0e-51 205.3 136 75.0
Sc26g0001760 Simmondsia chinensis HOM05D005488 ORTHO05D006568 6.6e-51 204.1 137 74.5
TWI14G1396 Tripterygium wilfordii HOM05D005488 ORTHO05D006568 6.6e-51 204.1 137 75.2
Gorai.004G168100 Gossypium raimondii HOM05D005488 ORTHO05D006568 1.1e-50 203.4 137 76.6
Atru.chr5.44 Acer truncatum HOM05D005488 ORTHO05D006568 1.5e-50 203.0 137 73.7
AUR62023368 Chenopodium quinoa HOM05D005488 ORTHO05D006568 1.5e-50 203.0 138 76.1
PSO782G2409 Papaver somniferum HOM05D005488 ORTHO05D006568 1.9e-50 202.6 136 74.3
TWI23G0236 Tripterygium wilfordii HOM05D005488 ORTHO05D006568 1.9e-50 202.6 137 75.9
Eucgr.D01184 Eucalyptus grandis HOM05D005488 ORTHO05D006568 3.3e-50 201.8 136 72.8
Gohir.A08G140700 Gossypium hirsutum HOM05D005488 ORTHO05D006568 7.3e-50 200.7 136 75.0
Duzib138G1174 Durio zibethinus HOM05D005488 ORTHO05D006568 9.5e-50 200.3 136 73.5
SalBow5G2779 Salvia bowleyana HOM05D005488 ORTHO05D006568 1.2e-49 199.9 135 71.9
Thecc.01G402400 Theobroma cacao HOM05D005488 ORTHO05D006568 1.6e-49 199.5 136 73.5
Ciclev10022799m.g Citrus clementina HOM05D005488 ORTHO05D006568 2.1e-49 199.1 137 74.5
COL.COLO4_12353 Corchorus olitorius HOM05D005488 ORTHO05D006568 2.1e-49 199.1 136 73.5
Aqoxy3G02564 Aquilegia oxysepala HOM05D005488 ORTHO05D006568 2.8e-49 198.7 136 74.3
MSTRG.17108 Avicennia marina HOM05D005488 ORTHO05D006568 3.6e-49 198.4 137 73.7
Aa31LG1G26190 Aethionema arabicum HOM05D005488 ORTHO05D006568 6.2e-49 197.6 138 69.6
DCAR_025027 Daucus carota HOM05D005488 ORTHO05D006568 8.1e-49 197.2 137 73.7
Hund17125 Selenicereus undatus HOM05D005488 ORTHO05D006568 8.1e-49 197.2 134 71.6
AL5G42420 Arabidopsis lyrata HOM05D005488 ORTHO05D006568 1.8e-48 196.1 138 69.6
Lsat_1_v5_gn_4_38520 Lactuca sativa HOM05D005488 ORTHO05D006568 2.3e-48 195.7 138 71.7
PGR042G2970 Punica granatum HOM05D005488 ORTHO05D006568 3.1e-48 195.3 137 70.8
Actinidia21613 Actinidia chinensis HOM05D005488 ORTHO05D006568 4.0e-48 194.9 139 71.2
MELO3C006268.2 Cucumis melo HOM05D005488 ORTHO05D006568 4.0e-48 194.9 140 70.7
CANSAT25G0013 Cannabis sativa HOM05D005488 ORTHO05D006568 5.2e-48 194.5 138 70.3
Lj3g0015162 Lotus japonicus HOM05D005488 ORTHO05D006568 8.9e-48 193.7 139 67.6
AT3G60210 Arabidopsis thaliana HOM05D005488 ORTHO05D006568 4.4e-47 191.4 139 68.3
Peaxi162Scf00745g00015 Petunia axillaris HOM05D005488 ORTHO05D006568 4.4e-47 191.4 138 70.3
SGA_v2.0_scaffold52G19266 Striga asiatica HOM05D005488 ORTHO05D006568 5.8e-47 191.0 136 70.6
AL4G43700 Arabidopsis lyrata HOM05D005488 ORTHO05D006568 9.8e-47 190.3 139 68.3
Carub.0005s2695 Capsella rubella HOM05D005488 ORTHO05D006568 1.3e-46 189.9 138 68.1
ClCG05G002900 Citrullus lanatus HOM05D005488 ORTHO05D006568 1.3e-46 189.9 140 70.7
Carub.0004s2720 Capsella rubella HOM05D005488 ORTHO05D006568 2.2e-46 189.1 139 67.6
CsaV3_3G010440 Cucumis sativus L. HOM05D005488 ORTHO05D006568 2.2e-46 189.1 140 69.3
Cc02_g25610 Coffea canephora HOM05D005488 ORTHO05D006568 2.9e-46 188.7 139 69.1
Glyma.03G103600 Glycine max HOM05D005488 ORTHO05D006568 2.9e-46 188.7 136 71.3
HanXRQChr16g0522961 Helianthus annuus HOM05D005488 ORTHO05D006568 4.9e-46 188.0 141 68.8
Lalb_Chr19g0126481 Lupinus albus HOM05D005488 ORTHO05D006568 4.9e-46 188.0 138 72.5
Phvul.010G041700 Phaseolus vulgaris HOM05D005488 ORTHO05D006568 4.9e-46 188.0 136 70.6
THA.LOC104827584 Tarenaya hassleriana HOM05D005488 ORTHO05D006568 4.9e-46 188.0 137 66.4
Lalb_Chr03g0040501 Lupinus albus HOM05D005488 ORTHO05D006568 1.9e-45 186.0 135 71.1
Cpa.g.sc52.71 Carica papaya HOM05D005488 ORTHO05D006568 3.2e-45 185.3 126 76.2
Migut.N01716 Erythranthe guttata HOM05D005488 ORTHO05D006568 4.1e-45 184.9 136 67.6
Ca_23141_v3 Cicer arietinum L. HOM05D005488 ORTHO05D006568 9.2e-45 183.7 137 67.2
Medtr8g009280 Medicago truncatula HOM05D005488 ORTHO05D006568 9.2e-45 183.7 136 66.9
CARHR139860 Cardamine hirsuta HOM05D005488 ORTHO05D006568 1.2e-44 183.3 139 66.9
unitig_26.g8858 Utricularia gibba HOM05D005488 ORTHO05D006568 1.2e-44 183.3 136 64.0
AT2G44650 Arabidopsis thaliana HOM05D005488 ORTHO05D006568 1.6e-44 183.0 140 69.3
Thhalv10001677m.g Eutrema salsugineum HOM05D005488 ORTHO05D006568 1.6e-44 183.0 140 65.7
Sed0025787 Sechium edule HOM05D005488 ORTHO05D006568 2.7e-44 182.2 140 68.6
CSS0010758 Camellia sinensis var. sinensis HOM05D005488 ORTHO05D006568 3.5e-44 181.8 138 68.8
ECA234G4156 Erigeron canadensis HOM05D005488 ORTHO05D006568 3.5e-44 181.8 140 66.4
arahy.Tifrunner.gnm1.ann1.L23YUH Arachis hypogaea HOM05D005488 ORTHO05D006568 4.6e-44 181.4 137 67.9
arahy.Tifrunner.gnm1.ann1.LT98XL Arachis hypogaea HOM05D005488 ORTHO05D006568 4.6e-44 181.4 137 67.9
ATR0665G403 Amborella trichopoda HOM05D005488 ORTHO05D006568 7.8e-44 180.6 124 71.8
BraA05t19455Z Brassica rapa HOM05D005488 ORTHO05D006568 2.3e-43 179.1 137 64.2
CSS0012976 Camellia sinensis var. sinensis HOM05D005488 ORTHO05D006568 2.3e-43 179.1 140 66.4
Sp4g26730 Schrenkiella parvula HOM05D005488 ORTHO05D006568 2.3e-43 179.1 139 63.3
Psat0s4427g0080 Pisum sativum HOM05D005488 ORTHO05D006568 3.9e-43 178.3 135 63.7
BraA04t18803Z Brassica rapa HOM05D005488 ORTHO05D006568 5.1e-43 177.9 138 63.8
BolC4t28620H Brassica oleracea HOM05D005488 ORTHO05D006568 1.1e-42 176.8 138 63.0
ClCG06G000860 Citrullus lanatus HOM05D005488 ORTHO05D006568 1.1e-42 176.8 135 67.4
VMungo0331G0633 Vigna mungo HOM05D005488 ORTHO05D006568 1.1e-42 176.8 116 75.0
BcaB02g08840 Brassica carinata HOM05D005488 ORTHO05D006568 1.5e-42 176.4 138 63.0
CDE04G3246 Ceratophyllum demersum HOM05D005488 ORTHO05D006568 1.5e-42 176.4 143 65.0
BcaC02g12287 Brassica carinata HOM05D005488 ORTHO05D006568 2.5e-42 175.6 137 62.8
C04p05600 Brassica napus HOM05D005488 ORTHO05D006568 2.5e-42 175.6 137 62.8
BolC4t22190H Brassica oleracea HOM05D005488 ORTHO05D006568 2.5e-42 175.6 137 62.8
BcaC02g07105 Brassica carinata HOM05D005488 ORTHO05D006568 3.3e-42 175.3 138 62.3
A05p04790 Brassica napus HOM05D005488 ORTHO05D006568 1.6e-41 172.9 137 62.0
Migut.B01488 Erythranthe guttata HOM05D005488 ORTHO05D006568 1.6e-41 172.9 136 65.4
CDE12G0168 Ceratophyllum demersum HOM05D005488 ORTHO05D006568 3.6e-41 171.8 143 63.6
Zm00001eb390720 Zea mays HOM05D005488 ORTHO05D006568 4.7e-41 171.4 134 67.9
Os10g0566700 Oryza sativa ssp. japonica HOM05D005488 ORTHO05D006568 1.4e-40 169.9 104 77.9
Sed0000336 Sechium edule HOM05D005488 ORTHO05D006568 3.1e-40 168.7 135 65.2
BcaB06g29391 Brassica carinata HOM05D005488 ORTHO05D006568 8.9e-40 167.2 130 63.1
Potri.002G135700 Populus trichocarpa HOM05D005488 ORTHO05D006568 3.4e-39 165.2 116 70.7
vmacro21078 Vaccinium macrocarpon HOM05D005488 ORTHO05D006568 3.4e-39 165.2 168 54.8
TPR.G17350 Trifolium pratense HOM05D005488 ORTHO05D006568 7.6e-39 164.1 107 71.0
unitig_750.g28406 Utricularia gibba HOM05D005488 ORTHO05D006568 7.6e-39 164.1 137 62.8
Zm00001eb024030 Zea mays HOM05D005488 ORTHO05D006568 7.6e-39 164.1 134 67.9
MELO3C022455.2 Cucumis melo HOM05D005488 ORTHO05D006568 2.9e-38 162.2 155 60.0
CsaV3_6G006710 Cucumis sativus L. HOM05D005488 ORTHO05D001261 2.4e-37 159.1 126 66.7
A04p33420 Brassica napus HOM05D005488 ORTHO05D006568 3.2e-37 158.7 138 58.0
Sabra02G0105500 Salix brachista HOM05D005488 ORTHO05D006568 4.1e-37 158.3 209 47.8
Dinv44023 Davidia involucrata HOM05D005488 ORTHO05D006568 7.1e-37 157.5 90 83.3
C04p71170 Brassica napus HOM05D005488 ORTHO05D006568 3.5e-36 155.2 144 56.9
Rhsim01G0143400 Rhododendron simsii HOM05D005488 ORTHO05D006568 6.6e-35 151.0 119 65.5
SEGI_24977 Sequoiadendron giganteum HOM05D005488 ORTHO05D006568 2.4e-32 142.5 104 66.3
HPP92_025708 Vanilla planifolia HOM05D005488 ORTHO05D006568 6.9e-32 141.0 89 74.2
SMO244G0054 Selaginella moellendorffii HOM05D005488 ORTHO05D006568 4.4e-31 138.3 89 69.7
AagrBONN_evm.TU.Sc2ySwM_117.3656 Anthoceros agrestis HOM05D005488 ORTHO05D006568 5.8e-31 137.9 117 55.6
Sabra14G0032200 Salix brachista HOM05D005488 ORTHO05D006568 1.3e-30 136.7 144 53.5
QL04p026246 Quercus lobata HOM05D005488 ORTHO05D006568 4.9e-30 134.8 70 90.0
Duzib133G1397 Durio zibethinus HOM05D005488 ORTHO05D006568 1.4e-29 133.3 108 66.7
Dinv43589 Davidia involucrata HOM05D005488 ORTHO05D006568 9.3e-29 130.6 88 75.0
Zm00001eb071630 Zea mays HOM05D005488 ORTHO05D006568 1.2e-28 130.2 134 59.7
Mapoly0181s0002 Marchantia polymorpha HOM05D005488 ORTHO05D006568 1.7e-27 126.3 135 53.3
Pp3c2_19170 Physcomitrium patens HOM05D005488 ORTHO05D006568 3.0e-27 125.6 111 56.8
Gohir.D07G176200 Gossypium hirsutum HOM05D005488 ORTHO05D006568 1.2e-23 113.6 74 74.3
MD13G1240800 Malus domestica HOM05D005488 ORTHO05D006568 3.4e-23 112.1 108 60.2
Pp3c1_20880 Physcomitrium patens HOM05D005488 ORTHO05D006568 4.5e-23 111.7 124 45.2
Glyma.07G120400 Glycine max HOM05D005488 ORTHO05D006568 1.7e-22 109.8 86 66.3
Phvul.006G055900 Phaseolus vulgaris HOM05D005488 ORTHO05D006568 2.5e-18 95.9 87 63.2
Gorai.007G266500 Gossypium raimondii HOM05D005488 ORTHO05D006568 3.3e-18 95.5 65 72.3
QL04p026254 Quercus lobata HOM05D005488 ORTHO05D006568 2.2e-14 82.8 69 59.4
MD00G1150500 Malus domestica HOM05D005488 ORTHO05D006568 2.5e-10 69.3 37 86.5
Rhsim03G0098500 Rhododendron simsii HOM05D005488 ORTHO05D006568 3.3e-10 68.9 55 60.0
EL10Ac8g19011 Beta vulgaris HOM05D002686 ORTHO05D003222 5.3e-08 61.6 137 30.7
Os02g0781400 Oryza sativa ssp. japonica HOM05D002686 ORTHO05D003222 2.0e-07 59.7 123 32.5
Ah.09g229170 Amaranthus hybridus HOM05D002686 ORTHO05D003222 3.4e-07 58.9 137 29.9
SEGI_38857 Sequoiadendron giganteum HOM05D002686 ORTHO05D003222 4.5e-07 58.5 116 36.2
AUR62025283 Chenopodium quinoa HOM05D002686 ORTHO05D003222 5.8e-07 58.2 99 34.3
AUR62028287 Chenopodium quinoa HOM05D002686 ORTHO05D003222 5.8e-07 58.2 99 34.3
THA.LOC104799611 Tarenaya hassleriana HOM05D002686 ORTHO05D003222 5.8e-07 58.2 97 33.0
CAN.G1661.28 Capsicum annuum HOM05D002686 ORTHO05D003222 1.0e-06 57.4 95 35.8
Sc20g0001070 Simmondsia chinensis HOM05D002686 ORTHO05D003222 1.3e-06 57.0 131 35.9
Ca_09316_v3 Cicer arietinum L. HOM05D002686 ORTHO05D003222 1.7e-06 56.6 96 37.5
Lj4g0026142 Lotus japonicus HOM05D002686 ORTHO05D003222 1.7e-06 56.6 138 31.2
AL6G32280 Arabidopsis lyrata HOM05D002686 ORTHO05D003222 2.9e-06 55.8 132 30.3
AT5G20720 Arabidopsis thaliana HOM05D002686 ORTHO05D003222 2.9e-06 55.8 132 30.3
Sabra06G0108500 Salix brachista HOM05D002686 ORTHO05D003222 2.9e-06 55.8 98 34.7
Zm00001eb373960 Zea mays HOM05D002686 ORTHO05D003222 2.9e-06 55.8 97 33.0
Aa31LG1G13960 Aethionema arabicum HOM05D002686 ORTHO05D003222 3.8e-06 55.5 95 33.7
COL.COLO4_21229 Corchorus olitorius HOM05D002686 ORTHO05D003222 3.8e-06 55.5 106 30.2
Medtr4g124910 Medicago truncatula HOM05D002686 ORTHO05D003222 3.8e-06 55.5 98 35.7
Pp3c19_8070 Physcomitrium patens HOM05D002686 ORTHO05D003222 3.8e-06 55.5 124 32.3
SGA_v2.0_scaffold296G47568 Striga asiatica HOM05D002686 ORTHO05D003222 3.8e-06 55.5 126 34.1
VMungo1215G1076 Vigna mungo HOM05D002686 ORTHO05D003222 3.8e-06 55.5 97 32.0
ECA248G0213 Erigeron canadensis HOM05D002686 ORTHO05D003222 4.9e-06 55.1 127 33.1
Potri.006G138600 Populus trichocarpa HOM05D002686 ORTHO05D003222 4.9e-06 55.1 98 33.7
Ah.14g084810 Amaranthus hybridus HOM05D002686 ORTHO05D003222 6.5e-06 54.7 138 30.4
BcaC03g13794 Brassica carinata HOM05D002686 ORTHO05D003222 6.5e-06 54.7 132 30.3
BcaC04g19463 Brassica carinata HOM05D002686 ORTHO05D003222 6.5e-06 54.7 132 29.5
BolC2t07068H Brassica oleracea HOM05D002686 ORTHO05D003222 6.5e-06 54.7 132 30.3
BolC3t13645H Brassica oleracea HOM05D002686 ORTHO05D003222 6.5e-06 54.7 132 29.5
Ca_02236_v3 Cicer arietinum L. HOM05D002686 ORTHO05D003222 6.5e-06 54.7 95 33.7
THA.LOC104815076 Tarenaya hassleriana HOM05D002686 ORTHO05D003222 6.5e-06 54.7 97 32.0
A03p10230 Brassica napus HOM05D002686 ORTHO05D003222 8.4e-06 54.3 132 29.5
BraA03t10332Z Brassica rapa HOM05D002686 ORTHO05D003222 8.4e-06 54.3 132 29.5
CARHR192090 Cardamine hirsuta HOM05D002686 ORTHO05D003222 8.4e-06 54.3 132 29.5
Cre16.g673729 Chlamydomonas reinhardtii HOM05D002686 ORTHO05D006568 8.4e-06 54.3 125 33.6
Duzib150G0982 Durio zibethinus HOM05D002686 ORTHO05D003222 8.4e-06 54.3 97 29.9
Lj7A689T77 Lonicera japonica HOM05D002686 ORTHO05D003222 8.4e-06 54.3 116 31.0
Lalb_Chr13g0299321 Lupinus albus HOM05D002686 ORTHO05D003222 8.4e-06 54.3 95 32.6
Sc18g0002740 Simmondsia chinensis HOM05D002686 ORTHO05D003222 8.4e-06 54.3 97 33.0
TPR.G12514 Trifolium pratense HOM05D002686 ORTHO05D003222 8.4e-06 54.3 110 31.8


User provided reference genes

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