Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01018320001 Vitis vinifera HOM05D007841 ORTHO05D009919 2.1e-32 141.7 71 100.0
CiPaw.14G018000 Carya illinoinensis HOM05D007841 ORTHO05D009919 2.3e-23 111.7 72 79.2
Phvul.008G138900 Phaseolus vulgaris HOM05D007841 ORTHO05D009919 3.4e-22 107.8 72 76.4
Prupe.2G120100 Prunus persica HOM05D007841 ORTHO05D009919 4.4e-22 107.5 72 75.0
Hma1.2p1_2138F.1_g314930 Hydrangea macrophylla HOM05D007841 ORTHO05D009919 9.8e-22 106.3 70 77.1
EL10Ac1g00736 Beta vulgaris HOM05D007841 ORTHO05D009919 1.7e-21 105.5 72 75.0
Potri.014G051850 Populus trichocarpa HOM05D007841 ORTHO05D009919 2.2e-21 105.1 72 75.0
Gohir.D12G101400 Gossypium hirsutum HOM05D007841 ORTHO05D009919 2.9e-21 104.8 72 73.6
Gorai.008G110500 Gossypium raimondii HOM05D007841 ORTHO05D009919 2.9e-21 104.8 72 73.6
RcHm_v2.0_Chr1g0345181 Rosa chinensis HOM05D007841 ORTHO05D009919 2.9e-21 104.8 70 74.3
PGR004G1954 Punica granatum HOM05D007841 ORTHO05D009919 3.7e-21 104.4 70 78.6
Actinidia30942 Actinidia chinensis HOM05D007841 ORTHO05D009919 4.9e-21 104.0 69 75.4
Lalb_Chr03g0040951 Lupinus albus HOM05D007841 ORTHO05D009919 4.9e-21 104.0 72 72.2
Oeu034848.1 Olea europaea HOM05D007841 ORTHO05D009919 4.9e-21 104.0 72 73.6
Psat3g152880 Pisum sativum HOM05D007841 ORTHO05D009919 4.9e-21 104.0 72 72.2
CAN.G756.38 Capsicum annuum HOM05D007841 ORTHO05D009919 6.4e-21 103.6 70 77.1
Medtr7g050540 Medicago truncatula HOM05D007841 ORTHO05D009919 6.4e-21 103.6 72 72.2
Eucgr.D01199 Eucalyptus grandis HOM05D007841 ORTHO05D009919 8.3e-21 103.2 72 76.4
FvH4_7g09140 Fragaria vesca HOM05D007841 ORTHO05D009919 8.3e-21 103.2 70 74.3
COL.COLO4_12370 Corchorus olitorius HOM05D007841 ORTHO05D009919 1.1e-20 102.8 72 72.2
Solyc01g088770.3 Solanum lycopersicum HOM05D007841 ORTHO05D009919 1.1e-20 102.8 70 75.7
Sopen01g035610 Solanum pennellii HOM05D007841 ORTHO05D009919 1.1e-20 102.8 70 75.7
PGSC0003DMG400001726 Solanum tuberosum HOM05D007841 ORTHO05D009919 1.1e-20 102.8 70 75.7
Lsat_1_v5_gn_1_83981 Lactuca sativa HOM05D007841 ORTHO05D009919 1.4e-20 102.4 70 72.9
Duzib138G1421 Durio zibethinus HOM05D007841 ORTHO05D009919 1.9e-20 102.1 72 72.2
Gohir.A12G098200 Gossypium hirsutum HOM05D007841 ORTHO05D009919 1.9e-20 102.1 72 72.2
Migut.N01723 Erythranthe guttata HOM05D007841 ORTHO05D009919 2.4e-20 101.7 70 74.3
Glyma.08G340600 Glycine max HOM05D007841 ORTHO05D009919 3.2e-20 101.3 72 72.2
Lj1g0014858 Lotus japonicus HOM05D007841 ORTHO05D009919 5.4e-20 100.5 72 70.8
PSO732G0215 Papaver somniferum HOM05D007841 ORTHO05D009919 5.4e-20 100.5 73 72.6
Sed0011386 Sechium edule HOM05D007841 ORTHO05D009919 5.4e-20 100.5 70 74.3
Thecc.01G400700 Theobroma cacao HOM05D007841 ORTHO05D009919 5.4e-20 100.5 68 75.0
CsaV3_3G010620 Cucumis sativus L. HOM05D007841 ORTHO05D009919 7.0e-20 100.1 70 72.9
THA.LOC104814059 Tarenaya hassleriana HOM05D007841 ORTHO05D009919 7.0e-20 100.1 67 77.6
ECA248G0141 Erigeron canadensis HOM05D007841 ORTHO05D009919 9.2e-20 99.8 70 70.0
HanXRQChr01g0019691 Helianthus annuus HOM05D007841 ORTHO05D009919 9.2e-20 99.8 70 70.0
AT1G02160 Arabidopsis thaliana HOM05D007841 ORTHO05D009919 1.2e-19 99.4 72 70.8
MD02G1221100 Malus domestica HOM05D007841 ORTHO05D009919 1.2e-19 99.4 72 69.4
PSO675G0834 Papaver somniferum HOM05D007841 ORTHO05D009919 1.2e-19 99.4 69 72.5
Carub.0001s0004 Capsella rubella HOM05D007841 ORTHO05D009919 1.6e-19 99.0 72 70.8
Atru.chr5.91 Acer truncatum HOM05D007841 ORTHO05D009919 2.1e-19 98.6 67 73.1
Aqoxy7G00835 Aquilegia oxysepala HOM05D007841 ORTHO05D009919 2.1e-19 98.6 65 76.9
AL1G10060 Arabidopsis lyrata HOM05D007841 ORTHO05D009919 2.1e-19 98.6 72 70.8
Cc02_g25410 Coffea canephora HOM05D007841 ORTHO05D009919 2.7e-19 98.2 70 70.0
Os04g0665000 Oryza sativa ssp. japonica HOM05D007841 ORTHO05D009919 2.7e-19 98.2 66 69.7
Zm00001eb067220 Zea mays HOM05D007841 ORTHO05D009919 2.7e-19 98.2 64 71.9
arahy.Tifrunner.gnm1.ann1.K94MSK Arachis hypogaea HOM05D007841 ORTHO05D009919 3.5e-19 97.8 69 72.5
MD07G1096500 Malus domestica HOM05D007841 ORTHO05D009919 4.6e-19 97.4 70 71.4
FAN06G3108 Fragaria x ananassa HOM05D007841 ORTHO05D009919 6.0e-19 97.1 67 73.1
Manes.05G057100 Manihot esculenta HOM05D007841 ORTHO05D009919 6.0e-19 97.1 66 74.2
BcaB03g13636 Brassica carinata HOM05D000300 ORTHO05D000383 7.8e-19 96.7 64 76.6
CARHR000160 Cardamine hirsuta HOM05D007841 ORTHO05D009919 1.3e-18 95.9 64 76.6
Thhalv10009237m.g Eutrema salsugineum HOM05D007841 ORTHO05D009919 1.3e-18 95.9 64 76.6
CANSAT25G3347 Cannabis sativa HOM05D007841 ORTHO05D009919 1.7e-18 95.5 65 72.3
CANSAT25G3825 Cannabis sativa HOM05D007841 ORTHO05D009919 1.7e-18 95.5 65 72.3
C05p00040 Brassica napus HOM05D007841 ORTHO05D009919 3.0e-18 94.7 64 75.0
BolC5t28791H Brassica oleracea HOM05D007841 ORTHO05D009919 3.0e-18 94.7 64 75.0
ClCG05G003010 Citrullus lanatus HOM05D007841 ORTHO05D009919 3.9e-18 94.4 70 68.6
unitig_22.g6702 Utricularia gibba HOM05D007841 ORTHO05D009919 1.6e-16 89.0 68 66.2
Haze_02887 Corylus avellana HOM05D000061 ORTHO05D000915 8.1e-16 86.7 60 68.3
Nn6g33742 Nelumbo nucifera HOM05D007841 ORTHO05D009919 2.3e-15 85.1 56 69.6
CSS0006405 Camellia sinensis var. sinensis HOM05D007841 ORTHO05D009919 8.9e-15 83.2 54 74.1
FAN01G1055 Fragaria x ananassa HOM05D007841 ORTHO05D009919 1.2e-14 82.8 54 75.9
FAN03G2201 Fragaria x ananassa HOM05D007841 ORTHO05D009919 1.2e-14 82.8 54 75.9
Nitab4.5_0004425g0050 Nicotiana tabacum HOM05D007841 ORTHO05D009919 2.6e-14 81.6 63 68.3
Peaxi162Scf00793g00363 Petunia axillaris HOM05D007841 ORTHO05D009919 2.6e-14 81.6 54 75.9
Hund17114 Selenicereus undatus HOM05D007841 ORTHO05D009919 7.5e-14 80.1 56 69.6
PSO732G0130 Papaver somniferum HOM05D007841 ORTHO05D009919 5.4e-12 73.9 56 69.6
arahy.Tifrunner.gnm1.ann1.X5EUJ4 Arachis hypogaea HOM05D007841 ORTHO05D009919 7.1e-12 73.6 54 68.5
BraA10t42285Z Brassica rapa HOM05D007841 ORTHO05D009919 7.1e-12 73.6 48 75.0
AUR62023385 Chenopodium quinoa HOM05D007841 ORTHO05D009919 7.1e-12 73.6 56 64.3
AUR62013771 Chenopodium quinoa HOM05D007841 ORTHO05D009919 9.2e-12 73.2 56 64.3
Ciclev10023064m.g Citrus clementina HOM05D007841 ORTHO05D009919 1.2e-11 72.8 50 70.0
Sp1g00090 Schrenkiella parvula HOM05D007841 ORTHO05D009919 1.2e-11 72.8 48 75.0
Sc02g0003210 Simmondsia chinensis HOM05D007841 ORTHO05D009919 1.2e-11 72.8 51 70.6
Pp3c22_2080 Physcomitrium patens HOM05D007841 ORTHO05D009919 2.1e-11 72.0 63 60.3
AagrBONN_evm.TU.Sc2ySwM_228.3132 Anthoceros agrestis HOM05D007841 ORTHO05D009919 4.6e-11 70.9 53 67.9
SalBow4G0679 Salvia bowleyana HOM05D007841 ORTHO05D009919 4.6e-11 70.9 54 61.1
Mapoly0181s0011 Marchantia polymorpha HOM05D007841 ORTHO05D009919 3.9e-10 67.8 69 52.2
TAR375G0262 Trochodendron aralioides HOM05D006103 ORTHO05D007468 5.1e-10 67.4 38 86.8
Sabra14G0036700 Salix brachista HOM05D007841 ORTHO05D009919 1.5e-09 65.9 39 84.6
Aa31LG1G11570 Aethionema arabicum HOM05D007841 ORTHO05D009919 4.3e-09 64.3 39 82.1
CAN.G756.35 Capsicum annuum HOM05D007841 ORTHO05D009919 8.1e-08 60.1 48 64.6


User provided reference genes

Program Settings