Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01018132001 Vitis vinifera HOM05D003860 ORTHO05D004218 1.5e-129 466.1 213 100.0
GSVIVG01017372001 Vitis vinifera HOM05D003860 ORTHO05D004218 7.1e-100 367.5 179 91.1
Dinv29898 Davidia involucrata HOM05D003860 ORTHO05D004218 5.3e-79 298.1 195 69.2
TAR365G0731 Trochodendron aralioides HOM05D003860 ORTHO05D004218 5.0e-77 291.6 195 67.2
MBI01_g26745_MAGBIO Magnolia biondii HOM05D003860 ORTHO05D004218 8.7e-74 280.8 204 61.8
Lj3C795G8 Lonicera japonica HOM05D003860 ORTHO05D004218 7.4e-73 277.7 201 61.7
Nn1g02668 Nelumbo nucifera HOM05D003860 ORTHO05D004218 1.8e-71 273.1 201 57.7
QL06p016008 Quercus lobata HOM05D003860 ORTHO05D004218 3.1e-71 272.3 227 56.8
Actinidia05456 Actinidia chinensis HOM05D003860 ORTHO05D004218 3.4e-70 268.9 189 65.1
Thecc.04G247900 Theobroma cacao HOM05D003860 ORTHO05D004218 7.7e-70 267.7 190 63.2
Potri.008G163500 Populus trichocarpa HOM05D003860 ORTHO05D004218 1.0e-69 267.3 195 64.1
Gorai.012G021000 Gossypium raimondii HOM05D003860 ORTHO05D004218 2.2e-69 266.2 196 61.7
Gohir.D04G018000 Gossypium hirsutum HOM05D003860 ORTHO05D004218 2.9e-69 265.8 195 62.1
Prupe.1G033500 Prunus persica HOM05D003860 ORTHO05D004218 2.9e-69 265.8 193 63.7
TWI09G0161 Tripterygium wilfordii HOM05D003860 ORTHO05D004218 5.0e-69 265.0 198 60.1
Sabra08G0124700 Salix brachista HOM05D003860 ORTHO05D004218 1.9e-68 263.1 189 63.5
MD16G1211400 Malus domestica HOM05D003860 ORTHO05D004218 1.2e-67 260.4 192 60.4
MSTRG.9921 Avicennia marina HOM05D003860 ORTHO05D004218 6.1e-67 258.1 194 60.8
Gohir.A05G398000 Gossypium hirsutum HOM05D003860 ORTHO05D004218 6.1e-67 258.1 195 59.0
CSS0040755 Camellia sinensis var. sinensis HOM05D003860 ORTHO05D004218 5.1e-66 255.0 202 61.4
Glyma.12G000500 Glycine max HOM05D003860 ORTHO05D004218 4.3e-65 251.9 195 56.9
FAN25G1720 Fragaria x ananassa HOM05D003860 ORTHO05D004218 2.8e-64 249.2 191 58.6
arahy.Tifrunner.gnm1.ann1.IPZV7K Arachis hypogaea HOM05D003860 ORTHO05D004218 8.2e-64 247.7 189 58.2
Phvul.002G055200 Phaseolus vulgaris HOM05D003860 ORTHO05D004218 2.4e-63 246.1 191 57.1
arahy.Tifrunner.gnm1.ann1.5VC0H5 Arachis hypogaea HOM05D003860 ORTHO05D004218 3.1e-63 245.7 189 57.7
RcHm_v2.0_Chr5g0051721 Rosa chinensis HOM05D003860 ORTHO05D004218 4.1e-63 245.4 192 56.8
vmacro08440 Vaccinium macrocarpon HOM05D003860 ORTHO05D004218 4.1e-63 245.4 177 64.4
Rhsim04G0189100 Rhododendron simsii HOM05D003860 ORTHO05D004218 1.2e-62 243.8 201 57.2
FvH4_3g28990 Fragaria vesca HOM05D003860 ORTHO05D004218 1.5e-62 243.4 191 57.1
RcHm_v2.0_Chr7g0211841 Rosa chinensis HOM05D003860 ORTHO05D004218 2.0e-62 243.0 197 55.3
Atru.chr4.2181 Acer truncatum HOM05D003860 ORTHO05D004218 2.6e-62 242.7 189 59.8
FAN11G1859 Fragaria x ananassa HOM05D003860 ORTHO05D004218 7.7e-62 241.1 191 56.5
FAN21G0272 Fragaria x ananassa HOM05D003860 ORTHO05D004218 7.7e-62 241.1 191 57.6
RcHm_v2.0_Chr4g0391121 Rosa chinensis HOM05D003860 ORTHO05D004218 2.9e-61 239.2 197 54.8
Hund04555 Selenicereus undatus HOM05D003860 ORTHO05D004218 6.5e-61 238.0 193 56.5
Sopen03g001470 Solanum pennellii HOM05D003860 ORTHO05D004218 1.1e-60 237.3 195 55.4
Nitab4.5_0000436g0080 Nicotiana tabacum HOM05D003860 ORTHO05D004218 1.4e-60 236.9 195 53.8
Lalb_Chr03g0043921 Lupinus albus HOM05D003860 ORTHO05D004218 1.9e-60 236.5 199 56.3
PGSC0003DMG400013397 Solanum tuberosum HOM05D003860 ORTHO05D004218 2.5e-60 236.1 195 55.4
Aqoxy2G03595 Aquilegia oxysepala HOM05D003860 ORTHO05D004218 7.2e-60 234.6 194 56.2
Solyc03g005440.3 Solanum lycopersicum HOM05D003860 ORTHO05D004218 1.6e-59 233.4 195 54.9
CAN.G638.70 Capsicum annuum HOM05D003860 ORTHO05D004218 2.1e-59 233.0 193 53.9
Eucgr.H03148 Eucalyptus grandis HOM05D003860 ORTHO05D004218 2.7e-59 232.6 188 56.9
Cc03_g05000 Coffea canephora HOM05D003860 ORTHO05D004218 4.7e-59 231.9 195 52.3
Duzib114G0251 Durio zibethinus HOM05D003860 ORTHO05D004218 7.9e-59 231.1 209 52.6
Nitab4.5_0003331g0100 Nicotiana tabacum HOM05D003860 ORTHO05D004218 7.9e-59 231.1 189 54.0
Psat7g227280 Pisum sativum HOM05D003860 ORTHO05D004218 1.0e-58 230.7 192 56.2
CDE02G3490 Ceratophyllum demersum HOM05D003860 ORTHO05D004218 1.4e-58 230.3 176 57.4
AUR62015467 Chenopodium quinoa HOM05D003860 ORTHO05D004218 1.4e-58 230.3 200 54.0
Haze_11316 Corylus avellana HOM05D003860 ORTHO05D004218 1.8e-58 229.9 281 45.2
Sc19g0003450 Simmondsia chinensis HOM05D003860 ORTHO05D004218 1.8e-58 229.9 192 53.6
Medtr4g032190 Medicago truncatula HOM05D003860 ORTHO05D004218 2.3e-58 229.6 191 55.0
CiPaw.02G115700 Carya illinoinensis HOM05D003860 ORTHO05D004218 3.0e-58 229.2 195 52.8
Lj3g0013538 Lotus japonicus HOM05D003860 ORTHO05D004218 3.0e-58 229.2 186 55.4
Peaxi162Scf00204g00115 Petunia axillaris HOM05D003860 ORTHO05D004218 8.8e-58 227.6 204 53.4
SalBow6G3557 Salvia bowleyana HOM05D003860 ORTHO05D004218 8.8e-58 227.6 172 58.1
Hund11859 Selenicereus undatus HOM05D003860 ORTHO05D004218 8.8e-58 227.6 184 54.3
TPR.G34114 Trifolium pratense HOM05D003860 ORTHO05D004218 8.8e-58 227.6 188 55.9
Oeu008802.1 Olea europaea HOM05D003860 ORTHO05D004218 2.6e-57 226.1 188 55.9
MELO3C026783.2 Cucumis melo HOM05D003860 ORTHO05D004218 5.7e-57 224.9 189 54.5
Peaxi162Scf00019g03122 Petunia axillaris HOM05D003860 ORTHO05D004218 9.7e-57 224.2 192 53.6
DCAR_027287 Daucus carota HOM05D003860 ORTHO05D004218 2.2e-56 223.0 205 53.7
PGR004G1248 Punica granatum HOM05D003860 ORTHO05D004218 4.8e-56 221.9 192 54.2
CANSAT78G0297 Cannabis sativa HOM05D003860 ORTHO05D004218 1.8e-55 219.9 189 56.1
PSO832G4205 Papaver somniferum HOM05D003860 ORTHO05D004218 1.8e-55 219.9 189 52.4
PSO210G3069 Papaver somniferum HOM05D003860 ORTHO05D004218 3.1e-55 219.2 189 52.4
SalBow2G1275 Salvia bowleyana HOM05D003860 ORTHO05D004218 4.1e-55 218.8 191 54.5
Lsat_1_v5_gn_5_71460 Lactuca sativa HOM05D003860 ORTHO05D004218 2.2e-53 213.0 188 52.1
Sed0002683 Sechium edule HOM05D003860 ORTHO05D004218 2.9e-53 212.6 184 52.2
Haze_11318 Corylus avellana HOM05D003860 ORTHO05D004218 1.5e-52 210.3 162 61.1
SalBow2G2538 Salvia bowleyana HOM05D003860 ORTHO05D004218 1.9e-52 209.9 221 48.9
HPP92_016098 Vanilla planifolia HOM05D003860 ORTHO05D004218 9.4e-52 207.6 193 51.8
PSO724G0870 Papaver somniferum HOM05D003860 ORTHO05D004218 1.6e-51 206.8 194 50.5
PSO386G0262 Papaver somniferum HOM05D003860 ORTHO05D004218 3.6e-51 205.7 194 50.5
Ah.07g207450 Amaranthus hybridus HOM05D003860 ORTHO05D004218 6.1e-51 204.9 189 48.1
Rhsim02G0034600 Rhododendron simsii HOM05D003860 ORTHO05D004218 2.3e-50 203.0 258 40.7
Lsat_1_v5_gn_5_72601 Lactuca sativa HOM05D003860 ORTHO05D004218 3.0e-50 202.6 188 49.5
CARHR265010 Cardamine hirsuta HOM05D003860 ORTHO05D004218 2.0e-49 199.9 196 46.4
PSO675G5794 Papaver somniferum HOM05D003860 ORTHO05D004218 4.4e-49 198.7 194 49.0
EL10Ac3g05899 Beta vulgaris HOM05D003860 ORTHO05D004218 9.7e-49 197.6 270 38.5
Nitab4.5_0009720g0020 Nicotiana tabacum HOM05D003860 ORTHO05D004218 1.3e-48 197.2 255 41.2
Ciclev10005898m.g Citrus clementina HOM05D003860 ORTHO05D004218 3.7e-48 195.7 175 54.9
Sopen09g032490 Solanum pennellii HOM05D003860 ORTHO05D004218 8.2e-48 194.5 189 47.1
PSO170G3926 Papaver somniferum HOM05D003860 ORTHO05D004218 1.1e-47 194.1 197 45.7
THA.LOC104798705 Tarenaya hassleriana HOM05D003860 ORTHO05D004218 1.1e-47 194.1 195 46.2
Lsat_1_v5_gn_5_72621 Lactuca sativa HOM05D003860 ORTHO05D004218 4.1e-47 192.2 196 46.4
Solyc09g089570.4 Solanum lycopersicum HOM05D003860 ORTHO05D004218 9.1e-47 191.0 171 50.3
HanXRQChr12g0378901 Helianthus annuus HOM05D003860 ORTHO05D004218 2.0e-46 189.9 197 48.7
Zm00001eb108590 Zea mays HOM05D003860 ORTHO05D004218 1.0e-45 187.6 192 43.8
PSO063G5549 Papaver somniferum HOM05D003860 ORTHO05D004218 1.3e-45 187.2 190 44.2
ECA233G4435 Erigeron canadensis HOM05D003860 ORTHO05D004218 5.0e-45 185.3 188 46.8
HanXRQChr12g0386161 Helianthus annuus HOM05D003860 ORTHO05D004218 6.5e-45 184.9 198 48.0
Ca_19732_v3 Cicer arietinum L. HOM05D003860 ORTHO05D004218 7.2e-44 181.4 166 53.6
Aa31LG3G8460 Aethionema arabicum HOM05D003860 ORTHO05D004218 9.4e-44 181.0 219 42.9
PSO724G0326 Papaver somniferum HOM05D003860 ORTHO05D004218 4.7e-43 178.7 187 42.8
Peaxi162Scf00024g00515 Petunia axillaris HOM05D003860 ORTHO05D004218 4.7e-43 178.7 178 51.7
Thhalv10014347m.g Eutrema salsugineum HOM05D003860 ORTHO05D004218 6.1e-43 178.3 192 42.7
unitig_32.g10833 Utricularia gibba HOM05D003860 ORTHO05D004218 6.1e-43 178.3 194 44.3
AL8G26450 Arabidopsis lyrata HOM05D003860 ORTHO05D004218 1.8e-42 176.8 187 43.3
CARHR156760 Cardamine hirsuta HOM05D003860 ORTHO05D004218 6.8e-42 174.9 190 44.7
Carub.0008s0633 Capsella rubella HOM05D003860 ORTHO05D004218 8.8e-42 174.5 194 43.3
Carub.0008s1217 Capsella rubella HOM05D003860 ORTHO05D004218 8.8e-42 174.5 189 43.9
Manes.03G168100 Manihot esculenta HOM05D003860 ORTHO05D004218 8.8e-42 174.5 141 56.0
PSO386G0027 Papaver somniferum HOM05D003860 ORTHO05D004218 4.4e-41 172.2 192 46.9
Sp2g07130 Schrenkiella parvula HOM05D003860 ORTHO05D004218 7.5e-41 171.4 188 44.1
COL.COLO4_20681 Corchorus olitorius HOM05D003860 ORTHO05D004218 1.7e-40 170.2 148 52.0
AL8G18530 Arabidopsis lyrata HOM05D003860 ORTHO05D004218 2.2e-40 169.9 189 43.9
PGSC0003DMG400017259 Solanum tuberosum HOM05D003860 ORTHO05D004218 2.2e-40 169.9 195 44.1
AT5G42670 Arabidopsis thaliana HOM05D003860 ORTHO05D004218 9.1e-39 164.5 188 44.1
SpUn0060_0020 Schrenkiella parvula HOM05D003860 ORTHO05D004218 9.1e-39 164.5 188 43.6
HanXRQChr16g0514681 Helianthus annuus HOM05D003860 ORTHO05D004218 1.3e-37 160.6 165 47.9
BolC9t55408H Brassica oleracea HOM05D003860 ORTHO05D004218 1.7e-37 160.2 188 45.2
BcaB01g04181 Brassica carinata HOM05D003860 ORTHO05D004218 5.0e-37 158.7 171 43.3
BcaB07g31066 Brassica carinata HOM05D003860 ORTHO05D004218 6.5e-37 158.3 188 44.1
BcaB07g31067 Brassica carinata HOM05D003860 ORTHO05D004218 6.5e-37 158.3 188 44.1
SHI00610 Sapria himalayana HOM05D003860 ORTHO05D004218 8.5e-37 157.9 130 56.9
BcaC04g21988 Brassica carinata HOM05D003860 ORTHO05D004218 1.1e-36 157.5 190 44.2
C09p25140 Brassica napus HOM05D003860 ORTHO05D004218 1.1e-36 157.5 190 44.2
BcaC01g06158 Brassica carinata HOM05D003860 ORTHO05D004218 4.2e-36 155.6 171 40.9
A09p19840 Brassica napus HOM05D003860 ORTHO05D004218 5.5e-36 155.2 191 42.9
BraA03t10876Z Brassica rapa HOM05D003860 ORTHO05D004218 7.2e-36 154.8 171 40.4
BraA09t37590Z Brassica rapa HOM05D003860 ORTHO05D004218 1.2e-35 154.1 191 42.9
C02p19970 Brassica napus HOM05D003860 ORTHO05D004218 2.7e-35 152.9 174 42.0
BolC2t08132H Brassica oleracea HOM05D003860 ORTHO05D004218 2.7e-35 152.9 174 42.0
BcaC06g31848 Brassica carinata HOM05D003860 ORTHO05D004218 5.2e-34 148.7 185 40.0
AUR62002255 Chenopodium quinoa HOM05D003860 ORTHO05D004218 5.2e-34 148.7 211 40.3
SGA_v2.0_scaffold101G29803 Striga asiatica HOM05D003860 ORTHO05D004218 8.8e-34 147.9 197 42.1
A02p11970 Brassica napus HOM05D003860 ORTHO05D004218 1.2e-33 147.5 174 40.8
BraA02t06261Z Brassica rapa HOM05D003860 ORTHO05D004218 4.4e-33 145.6 174 40.8
Mapoly0001s0415 Marchantia polymorpha HOM05D003860 ORTHO05D004218 4.4e-33 145.6 188 38.3
BcaB01g04182 Brassica carinata HOM05D003860 ORTHO05D004218 7.5e-33 144.8 172 40.7
Os05g0140600 Oryza sativa ssp. japonica HOM05D003860 ORTHO05D004218 1.8e-31 140.2 156 41.7
SEGI_04428 Sequoiadendron giganteum HOM05D003860 ORTHO05D004218 2.0e-30 136.7 139 42.4
ClCG06G006760 Citrullus lanatus HOM05D003860 ORTHO05D004218 3.5e-30 136.0 99 57.6
Lsat_1_v5_gn_7_62061 Lactuca sativa HOM05D003860 ORTHO05D004218 7.3e-28 128.3 119 47.1
SalBow5G0294 Salvia bowleyana HOM05D003860 ORTHO05D004218 3.6e-27 125.9 100 53.0
BcaC03g14550 Brassica carinata HOM05D003860 ORTHO05D004218 6.1e-27 125.2 172 36.6
Peaxi162Scf01247g00111 Petunia axillaris HOM05D003860 ORTHO05D004218 6.1e-27 125.2 97 53.6
ATR0665G258 Amborella trichopoda HOM05D003860 ORTHO05D004218 1.0e-26 124.4 100 50.0
Pp3c1_19590 Physcomitrium patens HOM05D003860 ORTHO05D004218 1.0e-26 124.4 179 40.2
Mapoly0013s0014 Marchantia polymorpha HOM05D003860 ORTHO05D004218 2.3e-26 123.2 194 36.6
PGSC0003DMG400005308 Solanum tuberosum HOM05D003860 ORTHO05D004218 1.7e-24 117.1 94 51.1
AT5G52070 Arabidopsis thaliana HOM05D003860 ORTHO05D004218 1.8e-23 113.6 119 43.7
C03p18580 Brassica napus HOM05D003860 ORTHO05D004218 1.8e-23 113.6 146 35.6
BolC3t14252H Brassica oleracea HOM05D003860 ORTHO05D004218 1.8e-23 113.6 146 35.6
Sp6g14330 Schrenkiella parvula HOM05D003860 ORTHO05D004218 5.4e-23 112.1 114 46.5
SMO358G0545 Selaginella moellendorffii HOM05D003860 ORTHO05D004218 7.0e-23 111.7 139 37.4
A03p15860 Brassica napus HOM05D003860 ORTHO05D004218 9.2e-23 111.3 146 34.9
Lsat_1_v5_gn_2_69300 Lactuca sativa HOM05D003860 ORTHO05D004218 5.9e-22 108.6 118 40.7
Zm00001eb417650 Zea mays HOM05D003860 ORTHO05D004218 6.6e-21 105.1 91 45.1
AagrBONN_evm.TU.Sc2ySwM_368.1422 Anthoceros agrestis HOM05D003860 ORTHO05D004218 3.3e-20 102.8 203 29.6
BcaC01g06162 Brassica carinata HOM05D003860 ORTHO05D004218 4.3e-20 102.4 145 35.2
CARHR181580 Cardamine hirsuta HOM05D003860 ORTHO05D004218 1.2e-17 94.4 148 36.5
CBR_g50140 Chara braunii HOM05D003860 ORTHO05D004218 4.4e-17 92.4 128 35.9
HPP92_016073 Vanilla planifolia HOM05D003860 ORTHO05D004218 7.0e-15 85.1 110 40.9
AagrBONN_evm.TU.Sc2ySwM_117.2824 Anthoceros agrestis HOM05D003860 ORTHO05D004218 3.0e-13 79.7 133 31.6
VMungo0251G0597 Vigna mungo HOM05D003860 ORTHO05D004218 3.9e-13 79.3 59 57.6
Cpa.g.sc126.47 Carica papaya HOM05D003860 ORTHO05D004218 2.1e-11 73.6 49 57.1
FAN11G2919 Fragaria x ananassa HOM05D003860 ORTHO05D004218 5.2e-10 68.9 115 31.3
SGA_v2.0_scaffold168G38539 Striga asiatica HOM05D001580 ORTHO05D001517 7.5e-09 65.1 205 28.8
HPP92_016088 Vanilla planifolia HOM05D003860 ORTHO05D004218 1.3e-08 64.3 53 52.8
PSO386G0085 Papaver somniferum HOM05D003860 ORTHO05D004218 1.9e-07 60.5 67 43.3
Cpa.g.sc126.46 Carica papaya HOM05D003860 ORTHO05D004218 9.2e-07 58.2 40 62.5
SalBow5G5209 Salvia bowleyana HOM05D003860 ORTHO05D004218 9.2e-07 58.2 49 49.0
THA.LOC104817702 Tarenaya hassleriana HOM05D001580 ORTHO05D001517 9.2e-07 58.2 147 31.3
TWI38G1307 Tripterygium wilfordii HOM05D001580 ORTHO05D001517 2.7e-06 56.6 166 28.3
MSTRG.15787 Avicennia marina HOM05D001580 ORTHO05D001517 3.5e-06 56.2 173 29.5
PSO724G0039 Papaver somniferum HOM05D003860 ORTHO05D004218 7.8e-06 55.1 64 42.2
Sopen11g001500 Solanum pennellii HOM05D001580 ORTHO05D001517 7.8e-06 55.1 166 30.7


User provided reference genes

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