Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01018045001 Vitis vinifera HOM05D002103 ORTHO05D007890 2.1e-28 128.3 63 100.0
Haze_18960 Corylus avellana HOM05D002103 ORTHO05D007890 4.6e-15 84.0 55 76.4
Dinv35973 Davidia involucrata HOM05D002103 ORTHO05D004020 1.0e-14 82.8 56 73.2
Haze_17544 Corylus avellana HOM05D002103 ORTHO05D004020 8.7e-14 79.7 55 72.7
Haze_17553 Corylus avellana HOM05D002103 ORTHO05D004020 8.7e-14 79.7 55 72.7
Cfa018527 Carpinus fangiana HOM05D002103 ORTHO05D004020 1.1e-13 79.3 55 72.7
CiPaw.16G045900 Carya illinoinensis HOM05D002103 ORTHO05D007890 1.5e-13 79.0 55 72.7
TAR628G0377 Trochodendron aralioides HOM05D000369 ORTHO05D007890 1.9e-13 78.6 55 69.1
QL02p005396 Quercus lobata HOM05D002103 ORTHO05D007890 4.3e-13 77.4 55 69.1
TAR381G1315 Trochodendron aralioides HOM05D002103 ORTHO05D007890 5.7e-13 77.0 55 67.3
Aqoxy1G04301 Aquilegia oxysepala HOM05D002103 ORTHO05D007890 7.4e-13 76.6 51 68.6
Aqoxy7G04203 Aquilegia oxysepala HOM05D002103 ORTHO05D007890 7.4e-13 76.6 51 68.6
Cpa.g.c24415.2 Carica papaya HOM05D002103 ORTHO05D007890 7.4e-13 76.6 53 67.9
Potri.014G032000 Populus trichocarpa HOM05D002103 ORTHO05D007890 9.7e-13 76.3 55 67.3
Aqoxy1G02088 Aquilegia oxysepala HOM05D002103 ORTHO05D007890 1.3e-12 75.9 51 68.6
MSTRG.22267 Avicennia marina HOM05D002103 ORTHO05D007890 1.6e-12 75.5 55 63.6
CARHR261220 Cardamine hirsuta HOM05D002103 ORTHO05D007890 1.6e-12 75.5 57 64.9
AT4G10130 Arabidopsis thaliana HOM05D002103 ORTHO05D007890 2.2e-12 75.1 57 66.7
Phvul.011G031400 Phaseolus vulgaris HOM05D002103 ORTHO05D007890 2.8e-12 74.7 60 60.0
AL6G43940 Arabidopsis lyrata HOM05D002103 ORTHO05D007890 3.7e-12 74.3 57 63.2
FvH4_2g34630 Fragaria vesca HOM05D002103 ORTHO05D007890 3.7e-12 74.3 51 70.6
Thecc.08G011000 Theobroma cacao HOM05D002103 ORTHO05D007890 3.7e-12 74.3 51 70.6
Sabra14G0022500 Salix brachista HOM05D002103 ORTHO05D007890 6.3e-12 73.6 51 68.6
THA.LOC104802577 Tarenaya hassleriana HOM05D002103 ORTHO05D007890 6.3e-12 73.6 53 67.9
CANSAT11G1050 Cannabis sativa HOM05D002103 ORTHO05D007890 8.2e-12 73.2 48 70.8
FAN27G2960 Fragaria x ananassa HOM05D002103 ORTHO05D007890 8.2e-12 73.2 51 68.6
RcHm_v2.0_Chr7g0208301 Rosa chinensis HOM05D002103 ORTHO05D007890 8.2e-12 73.2 51 68.6
VMungo1127G1488 Vigna mungo HOM05D002103 ORTHO05D007890 8.2e-12 73.2 53 62.3
CSS0015524 Camellia sinensis var. sinensis HOM05D002103 ORTHO05D007890 1.1e-11 72.8 50 72.0
Glyma.11G102400 Glycine max HOM05D002103 ORTHO05D007890 1.1e-11 72.8 53 62.3
Atru.chr13.649 Acer truncatum HOM05D002103 ORTHO05D007890 1.4e-11 72.4 55 65.5
Carub.0006s2870 Capsella rubella HOM05D002103 ORTHO05D007890 1.4e-11 72.4 57 64.9
BcaB05g23918 Brassica carinata HOM05D002103 ORTHO05D007890 1.8e-11 72.0 57 64.9
Dinv39329 Davidia involucrata HOM05D002103 ORTHO05D007890 1.8e-11 72.0 56 67.9
Sp6g07290 Schrenkiella parvula HOM05D002103 ORTHO05D007890 1.8e-11 72.0 57 66.7
SpUn0121_0020 Schrenkiella parvula HOM05D002103 ORTHO05D007890 1.8e-11 72.0 57 66.7
TPR.G32346 Trifolium pratense HOM05D002103 ORTHO05D007890 1.8e-11 72.0 53 62.3
Hma1.2p1_0982F.1_g243870 Hydrangea macrophylla HOM05D002103 ORTHO05D007890 2.4e-11 71.6 55 67.3
Lj1g0021003 Lotus japonicus HOM05D002103 ORTHO05D007890 2.4e-11 71.6 53 60.4
CSS0029487 Camellia sinensis var. sinensis HOM05D002103 ORTHO05D007890 3.1e-11 71.2 50 70.0
RcHm_v2.0_Chr6g0307451 Rosa chinensis HOM05D002103 ORTHO05D007890 3.1e-11 71.2 51 66.7
Nn5g30226 Nelumbo nucifera HOM05D002103 ORTHO05D007890 4.1e-11 70.9 50 66.0
Ciclev10003422m.g Citrus clementina HOM05D002103 ORTHO05D007890 5.3e-11 70.5 55 63.6
FAN15G2894 Fragaria x ananassa HOM05D002103 ORTHO05D004020 5.3e-11 70.5 51 66.7
FAN20G2285 Fragaria x ananassa HOM05D002103 ORTHO05D007890 6.9e-11 70.1 51 66.7
Medtr3g006810 Medicago truncatula HOM05D002103 ORTHO05D007890 1.2e-10 69.3 53 58.5
Medtr6g003930 Medicago truncatula HOM05D002103 ORTHO05D007890 1.2e-10 69.3 53 58.5
Gohir.A03G078312 Gossypium hirsutum HOM05D002103 ORTHO05D007890 1.5e-10 68.9 49 67.3
Gohir.D02G092000 Gossypium hirsutum HOM05D002103 ORTHO05D007890 1.5e-10 68.9 49 67.3
Medtr4g074580 Medicago truncatula HOM05D002103 ORTHO05D007890 1.5e-10 68.9 53 58.5
BcaC04g21020 Brassica carinata HOM05D002103 ORTHO05D007890 2.0e-10 68.6 57 64.9
C09p36600 Brassica napus HOM05D002103 ORTHO05D007890 2.0e-10 68.6 57 64.9
BolC9t56492H Brassica oleracea HOM05D002103 ORTHO05D007890 2.0e-10 68.6 57 64.9
Thhalv10029407m.g Eutrema salsugineum HOM05D002103 ORTHO05D007890 2.0e-10 68.6 57 63.2
Lj3P736T14 Lonicera japonica HOM05D002103 ORTHO05D007890 2.0e-10 68.6 50 72.0
Manes.03G089400 Manihot esculenta HOM05D002103 ORTHO05D007890 2.0e-10 68.6 46 73.9
Duzib093G0968 Durio zibethinus HOM05D002103 ORTHO05D007890 3.4e-10 67.8 51 60.8
Gorai.005G103400 Gossypium raimondii HOM05D002103 ORTHO05D007890 3.4e-10 67.8 49 67.3
Aa31LG9G11870 Aethionema arabicum HOM05D002103 ORTHO05D007890 4.5e-10 67.4 59 62.7
arahy.Tifrunner.gnm1.ann1.MW41KC Arachis hypogaea HOM05D002103 ORTHO05D007890 4.5e-10 67.4 53 58.5
COL.COLO4_26477 Corchorus olitorius HOM05D002103 ORTHO05D007890 4.5e-10 67.4 51 64.7
HanXRQChr12g0375061 Helianthus annuus HOM05D002103 ORTHO05D007890 4.5e-10 67.4 59 54.2
Lj4C53T13 Lonicera japonica HOM05D002103 ORTHO05D007890 4.5e-10 67.4 52 69.2
A09p28810 Brassica napus HOM05D002103 ORTHO05D007890 5.9e-10 67.0 53 62.3
BraA09t38443Z Brassica rapa HOM05D002103 ORTHO05D007890 5.9e-10 67.0 53 62.3
MD15G1084800 Malus domestica HOM05D002103 ORTHO05D007890 5.9e-10 67.0 47 66.0
Prupe.1G438600 Prunus persica HOM05D002103 ORTHO05D007890 5.9e-10 67.0 47 68.1
TWI56G0989 Tripterygium wilfordii HOM05D002103 ORTHO05D007890 5.9e-10 67.0 45 68.9
Eucgr.F00241 Eucalyptus grandis HOM05D002103 ORTHO05D007890 7.7e-10 66.6 53 60.4
Psat5g230280 Pisum sativum HOM05D002103 ORTHO05D007890 7.7e-10 66.6 60 51.7
arahy.Tifrunner.gnm1.ann1.7RGS7A Arachis hypogaea HOM05D002103 ORTHO05D007890 1.0e-09 66.2 53 58.5
Lj3g0001779 Lotus japonicus HOM05D002103 ORTHO05D007890 1.3e-09 65.9 53 58.5
Migut.N02701 Erythranthe guttata HOM05D002103 ORTHO05D007890 1.7e-09 65.5 49 61.2
FAN15G1587 Fragaria x ananassa HOM05D002103 ORTHO05D007890 1.7e-09 65.5 48 68.8
Lsat_1_v5_gn_1_20241 Lactuca sativa HOM05D002103 ORTHO05D007890 1.7e-09 65.5 53 58.5
PSO170G0070 Papaver somniferum HOM05D002103 ORTHO05D007890 1.7e-09 65.5 58 53.4
Ca_14028_v3 Cicer arietinum L. HOM05D002103 ORTHO05D007890 2.2e-09 65.1 53 56.6
BcaB01g01453 Brassica carinata HOM05D002103 ORTHO05D007890 2.9e-09 64.7 57 59.6
CAN.G1422.7 Capsicum annuum HOM05D002103 ORTHO05D007890 2.9e-09 64.7 53 56.6
ClCG08G015720 Citrullus lanatus HOM05D002103 ORTHO05D007890 2.9e-09 64.7 48 60.4
Ah.13g070460 Amaranthus hybridus HOM05D005832 ORTHO05D007117 5.0e-09 63.9 52 57.7
Lalb_Chr23g0267731 Lupinus albus HOM05D002103 ORTHO05D007890 5.0e-09 63.9 45 60.0
MD08G1103500 Malus domestica HOM05D002103 ORTHO05D007890 5.0e-09 63.9 47 66.0
EL10Ac3g05247 Beta vulgaris HOM05D002103 ORTHO05D007890 6.5e-09 63.5 53 62.3
Nitab4.5_0004184g0060 Nicotiana tabacum HOM05D006157 ORTHO05D007890 8.5e-09 63.2 51 60.8
Nitab4.5_0004376g0080 Nicotiana tabacum HOM05D002103 ORTHO05D007890 8.5e-09 63.2 52 59.6
Sed0021207 Sechium edule HOM05D002103 ORTHO05D007890 1.1e-08 62.8 47 59.6
MELO3C010884.2 Cucumis melo HOM05D002103 ORTHO05D007890 1.4e-08 62.4 47 59.6
CsaV3_2G028050 Cucumis sativus L. HOM05D002103 ORTHO05D007890 1.4e-08 62.4 47 59.6
ECA247G1332 Erigeron canadensis HOM05D002103 ORTHO05D007890 1.4e-08 62.4 50 60.0
HanXRQChr02g0037671 Helianthus annuus HOM05D002103 ORTHO05D007890 1.4e-08 62.4 48 58.3
Oeu011541.1 Olea europaea HOM05D002103 ORTHO05D007890 1.4e-08 62.4 46 60.9
Oeu011560.1 Olea europaea HOM05D002103 ORTHO05D007890 1.4e-08 62.4 46 60.9
PSO210G1636 Papaver somniferum HOM05D002103 ORTHO05D007890 1.9e-08 62.0 51 58.8
PSO801G0348 Papaver somniferum HOM05D002103 ORTHO05D007890 1.9e-08 62.0 58 51.7
Zm00001eb315040 Zea mays HOM05D002103 ORTHO05D007890 1.9e-08 62.0 61 52.5
Nitab4.5_0000453g0220 Nicotiana tabacum HOM05D006157 ORTHO05D007890 2.5e-08 61.6 53 54.7
PSO339G5974 Papaver somniferum HOM05D002103 ORTHO05D007890 2.5e-08 61.6 58 51.7
Peaxi162Scf00064g00125 Petunia axillaris HOM05D006157 ORTHO05D007826 2.5e-08 61.6 53 54.7
PGR083G1082 Punica granatum HOM05D002103 ORTHO05D007890 2.5e-08 61.6 58 53.4
Solyc12g088890.3 Solanum lycopersicum HOM05D006157 ORTHO05D007890 3.2e-08 61.2 53 54.7
Cc10_g04330 Coffea canephora HOM05D002103 ORTHO05D007890 4.2e-08 60.8 53 50.9
PGSC0003DMG400015418 Solanum tuberosum HOM05D002103 ORTHO05D007890 4.2e-08 60.8 53 54.7
AUR62006065 Chenopodium quinoa HOM05D005832 ORTHO05D007117 7.2e-08 60.1 48 60.4
Sopen12g030780 Solanum pennellii HOM05D002103 ORTHO05D007890 7.2e-08 60.1 53 52.8
Sc02g0007040 Simmondsia chinensis HOM05D002103 ORTHO05D004020 9.4e-08 59.7 52 55.8
SGA_v2.0_scaffold62G21581 Striga asiatica HOM05D002103 ORTHO05D007890 9.4e-08 59.7 48 56.2
unitig_19.g30010 Utricularia gibba HOM05D002103 ORTHO05D007890 9.4e-08 59.7 53 50.9
unitig_8.g5018 Utricularia gibba HOM05D002103 ORTHO05D007890 9.4e-08 59.7 53 50.9
SGA_v2.0_scaffold208G41999 Striga asiatica HOM05D002103 ORTHO05D007890 2.1e-07 58.5 51 54.9
Aqoxy125s002 Aquilegia oxysepala HOM05D002103 ORTHO05D007890 3.6e-07 57.8 42 64.3
Sc19g0008280 Simmondsia chinensis HOM05D002103 ORTHO05D007890 4.6e-07 57.4 48 56.2
SGA_v2.0_scaffold168G38534 Striga asiatica HOM05D002103 ORTHO05D007890 4.6e-07 57.4 48 56.2
ATR0605G347 Amborella trichopoda HOM05D002103 ORTHO05D007890 1.0e-06 56.2 57 49.1
Os09g0460000 Oryza sativa ssp. japonica HOM05D002103 ORTHO05D007890 2.3e-06 55.1 38 57.9
SHI08293 Sapria himalayana HOM05D002103 ORTHO05D007890 3.0e-06 54.7 40 62.5
HPP92_016731 Vanilla planifolia HOM05D002103 ORTHO05D007890 3.9e-06 54.3 51 49.0


User provided reference genes

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