Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01017965001 Vitis vinifera HOM05D006086 ORTHO05D007396 1.8e-30 135.2 63 100.0
Thecc.04G230800 Theobroma cacao HOM05D006086 ORTHO05D007396 1.0e-25 119.4 63 87.3
CiPaw.01G165300 Carya illinoinensis HOM05D006086 ORTHO05D007396 1.3e-25 119.0 61 88.5
Manes.15G028500 Manihot esculenta HOM05D006086 ORTHO05D007396 1.7e-25 118.6 63 87.3
Lj5g0007110 Lotus japonicus HOM05D006086 ORTHO05D007396 2.2e-25 118.2 63 87.3
Cc03_g03710 Coffea canephora HOM05D006086 ORTHO05D007396 8.4e-25 116.3 62 87.1
CsaV3_3G013360 Cucumis sativus L. HOM05D006086 ORTHO05D007396 8.4e-25 116.3 61 85.2
Glyma.20G145600 Glycine max HOM05D006086 ORTHO05D007396 8.4e-25 116.3 63 85.7
Glyma.10G248500 Glycine max HOM05D006086 ORTHO05D007396 1.1e-24 115.9 63 85.7
Oeu023395.1 Olea europaea HOM05D006086 ORTHO05D007396 1.1e-24 115.9 62 88.7
arahy.Tifrunner.gnm1.ann1.GC569L Arachis hypogaea HOM05D006086 ORTHO05D007396 1.4e-24 115.5 63 87.3
arahy.Tifrunner.gnm1.ann1.I5363L Arachis hypogaea HOM05D006086 ORTHO05D007396 1.4e-24 115.5 63 87.3
Prupe.1G012900 Prunus persica HOM05D006086 ORTHO05D007396 1.4e-24 115.5 62 87.1
Medtr1g104520 Medicago truncatula HOM05D006086 ORTHO05D007396 1.9e-24 115.2 63 82.5
CSS0045022 Camellia sinensis var. sinensis HOM05D006086 ORTHO05D007396 2.5e-24 114.8 63 85.7
Nn4g26304 Nelumbo nucifera HOM05D006086 ORTHO05D007396 3.2e-24 114.4 62 85.5
Phvul.007G056800 Phaseolus vulgaris HOM05D006086 ORTHO05D007396 3.2e-24 114.4 62 83.9
RcHm_v2.0_Chr4g0416351 Rosa chinensis HOM05D006086 ORTHO05D007396 3.2e-24 114.4 59 88.1
Medtr5g006200 Medicago truncatula HOM05D006086 ORTHO05D007396 4.2e-24 114.0 60 86.7
Phvul.002G045900 Phaseolus vulgaris HOM05D006086 ORTHO05D007396 4.2e-24 114.0 61 85.2
Sed0006679 Sechium edule HOM05D006086 ORTHO05D007396 4.2e-24 114.0 61 83.6
Gohir.A09G215300 Gossypium hirsutum HOM05D006086 ORTHO05D007396 5.5e-24 113.6 57 91.2
Gohir.D09G217800 Gossypium hirsutum HOM05D006086 ORTHO05D007396 5.5e-24 113.6 57 91.2
Oeu031234.1 Olea europaea HOM05D006086 ORTHO05D007396 5.5e-24 113.6 62 83.9
FvH4_4g15440 Fragaria vesca HOM05D006086 ORTHO05D007396 7.1e-24 113.2 59 86.4
FAN12G3621 Fragaria x ananassa HOM05D006086 ORTHO05D007396 7.1e-24 113.2 59 86.4
FAN17G2927 Fragaria x ananassa HOM05D006086 ORTHO05D007396 7.1e-24 113.2 59 86.4
FAN22G1306 Fragaria x ananassa HOM05D006086 ORTHO05D007396 7.1e-24 113.2 59 86.4
Glyma.01G238500 Glycine max HOM05D006086 ORTHO05D007396 7.1e-24 113.2 63 82.5
Potri.010G088200 Populus trichocarpa HOM05D006086 ORTHO05D007396 7.1e-24 113.2 63 84.1
Potri.008G152200 Populus trichocarpa HOM05D006086 ORTHO05D007396 9.3e-24 112.8 63 84.1
GSVIVG01021842001 Vitis vinifera HOM05D006086 ORTHO05D007396 9.3e-24 112.8 63 82.5
Atru.ctg752_3.89 Acer truncatum HOM05D006086 ORTHO05D007396 1.2e-23 112.5 56 89.3
DCAR_030633 Daucus carota HOM05D006086 ORTHO05D007396 1.2e-23 112.5 62 83.9
SalBow2G3603 Salvia bowleyana HOM05D006086 ORTHO05D007396 1.6e-23 112.1 59 86.4
Thecc.05G288200 Theobroma cacao HOM05D006086 ORTHO05D007396 1.6e-23 112.1 63 84.1
arahy.Tifrunner.gnm1.ann1.NA8V5S Arachis hypogaea HOM05D006086 ORTHO05D007396 2.1e-23 111.7 64 84.4
Lalb_Chr05g0210971 Lupinus albus HOM05D006086 ORTHO05D007396 2.1e-23 111.7 63 82.5
Oeu011629.1 Olea europaea HOM05D006086 ORTHO05D007396 2.1e-23 111.7 62 87.1
Sed0021654 Sechium edule HOM05D006086 ORTHO05D007396 2.1e-23 111.7 61 85.2
arahy.Tifrunner.gnm1.ann1.K13GF2 Arachis hypogaea HOM05D006086 ORTHO05D007396 2.7e-23 111.3 64 84.4
CAN.G907.3 Capsicum annuum HOM05D006086 ORTHO05D007396 6.0e-23 110.2 62 85.5
Glyma.11G005000 Glycine max HOM05D006086 ORTHO05D007396 1.0e-22 109.4 57 84.2
Solyc09g075980.3 Solanum lycopersicum HOM05D006086 ORTHO05D007396 1.0e-22 109.4 63 82.5
PGSC0003DMG400030088 Solanum tuberosum HOM05D006086 ORTHO05D007396 1.0e-22 109.4 63 82.5
Migut.G00335 Erythranthe guttata HOM05D006086 ORTHO05D007396 1.3e-22 109.0 63 81.0
HanXRQChr15g0492031 Helianthus annuus HOM05D006086 ORTHO05D007396 1.3e-22 109.0 60 86.7
Lsat_1_v5_gn_7_65621 Lactuca sativa HOM05D006086 ORTHO05D007396 1.8e-22 108.6 58 87.9
Gorai.006G238700 Gossypium raimondii HOM05D006086 ORTHO05D007396 2.3e-22 108.2 57 89.5
TAR636G0808 Trochodendron aralioides HOM05D006086 ORTHO05D007396 2.3e-22 108.2 63 81.0
A05p26350 Brassica napus HOM05D006086 ORTHO05D007396 3.0e-22 107.8 63 79.4
BraA05t21510Z Brassica rapa HOM05D006086 ORTHO05D007396 3.0e-22 107.8 63 79.4
Hma1.2p1_3079F.1_g332420 Hydrangea macrophylla HOM05D006086 ORTHO05D007396 3.0e-22 107.8 59 81.4
EL10Ac3g06420 Beta vulgaris HOM05D006086 ORTHO05D007396 3.9e-22 107.5 65 81.5
MD13G1192200 Malus domestica HOM05D006086 ORTHO05D007396 3.9e-22 107.5 60 80.0
ECA240G3083 Erigeron canadensis HOM05D006086 ORTHO05D007396 5.1e-22 107.1 57 87.7
TAR633G0013 Trochodendron aralioides HOM05D006086 ORTHO05D007396 5.1e-22 107.1 63 81.0
HPP92_015928 Vanilla planifolia HOM05D006086 ORTHO05D007396 5.1e-22 107.1 63 77.8
Carub.0003s2258 Capsella rubella HOM05D006086 ORTHO05D007396 6.7e-22 106.7 63 79.4
Gohir.A11G255000 Gossypium hirsutum HOM05D006086 ORTHO05D007396 8.7e-22 106.3 63 81.0
Gohir.D11G264700 Gossypium hirsutum HOM05D006086 ORTHO05D007396 8.7e-22 106.3 63 81.0
Gorai.007G284800 Gossypium raimondii HOM05D006086 ORTHO05D007396 8.7e-22 106.3 63 81.0
Nitab4.5_0000043g0210 Nicotiana tabacum HOM05D006086 ORTHO05D007396 8.7e-22 106.3 62 83.9
Nitab4.5_0012971g0020 Nicotiana tabacum HOM05D006086 ORTHO05D007396 8.7e-22 106.3 62 83.9
DCAR_027212 Daucus carota HOM05D006086 ORTHO05D007396 1.1e-21 105.9 59 81.4
Nn1g02292 Nelumbo nucifera HOM05D006086 ORTHO05D007396 1.5e-21 105.5 58 81.0
Prupe.7G268200 Prunus persica HOM05D006086 ORTHO05D007396 1.5e-21 105.5 60 80.0
CSS0028415 Camellia sinensis var. sinensis HOM05D006086 ORTHO05D007396 1.9e-21 105.1 63 77.8
BraA01t03396Z Brassica rapa HOM05D006086 ORTHO05D007396 2.5e-21 104.8 62 75.8
BolC3t17520H Brassica oleracea HOM05D006086 ORTHO05D007396 3.3e-21 104.4 63 76.2
Manes.03G179500 Manihot esculenta HOM05D006086 ORTHO05D007396 3.3e-21 104.4 63 81.0
AL3G36690 Arabidopsis lyrata HOM05D006086 ORTHO05D007396 5.7e-21 103.6 63 77.8
Dinv44531 Davidia involucrata HOM05D006086 ORTHO05D007396 5.7e-21 103.6 59 81.4
Lalb_Chr23g0273411 Lupinus albus HOM05D006086 ORTHO05D007396 7.4e-21 103.2 59 81.4
A01p32670 Brassica napus HOM05D006086 ORTHO05D007396 9.6e-21 102.8 62 74.2
MD16G1192800 Malus domestica HOM05D006086 ORTHO05D007396 9.6e-21 102.8 68 70.6
CARHR098310 Cardamine hirsuta HOM05D006086 ORTHO05D007396 1.6e-20 102.1 54 87.0
C01p41850 Brassica napus HOM05D006086 ORTHO05D007396 4.8e-20 100.5 54 83.3
BolC1t04139H Brassica oleracea HOM05D006086 ORTHO05D007396 4.8e-20 100.5 54 83.3
Os07g0572400 Oryza sativa ssp. japonica HOM05D006086 ORTHO05D007396 4.8e-20 100.5 53 84.9
Thecc.01G143500 Theobroma cacao HOM05D006086 ORTHO05D007396 6.3e-20 100.1 62 72.6
MD02G1003000 Malus domestica HOM05D006086 ORTHO05D007396 1.1e-19 99.4 61 75.4
Os01g0778500 Oryza sativa ssp. japonica HOM05D006086 ORTHO05D007396 1.8e-19 98.6 60 71.7
Phvul.001G152800 Phaseolus vulgaris HOM05D006086 ORTHO05D007396 1.8e-19 98.6 63 77.8
Gohir.A02G031700 Gossypium hirsutum HOM05D006086 ORTHO05D007396 3.1e-19 97.8 61 78.7
Gohir.D02G038400 Gossypium hirsutum HOM05D006086 ORTHO05D007396 3.1e-19 97.8 61 78.7
Gorai.005G042300 Gossypium raimondii HOM05D006086 ORTHO05D007396 3.1e-19 97.8 61 78.7
Psat4g210480 Pisum sativum HOM05D006086 ORTHO05D007396 3.1e-19 97.8 65 69.2
Glyma.03G155400 Glycine max HOM05D006086 ORTHO05D007396 5.3e-19 97.1 63 76.2
Potri.005G211000 Populus trichocarpa HOM05D006086 ORTHO05D007396 5.3e-19 97.1 62 75.8
Manes.05G077700 Manihot esculenta HOM05D006086 ORTHO05D007396 6.9e-19 96.7 62 74.2
CiPaw.07G090400 Carya illinoinensis HOM05D006086 ORTHO05D007396 1.2e-18 95.9 57 75.4
Psat3g063680 Pisum sativum HOM05D006086 ORTHO05D007396 1.2e-18 95.9 63 74.6
BolC5t32839H Brassica oleracea HOM05D006086 ORTHO05D007396 1.5e-18 95.5 57 77.2
Glyma.19G157600 Glycine max HOM05D006086 ORTHO05D007396 1.5e-18 95.5 63 74.6
MD15G1146200 Malus domestica HOM05D006086 ORTHO05D007396 2.6e-18 94.7 55 78.2
Sed0017079 Sechium edule HOM05D006086 ORTHO05D007396 2.6e-18 94.7 61 73.8
Lj1g0005264 Lotus japonicus HOM05D006086 ORTHO05D007396 3.4e-18 94.4 63 73.0
Zm00001eb151540 Zea mays HOM05D006086 ORTHO05D007396 3.4e-18 94.4 64 67.2
Manes.09G155600 Manihot esculenta HOM05D006086 ORTHO05D007396 5.9e-18 93.6 58 74.1
Potri.013G037800 Populus trichocarpa HOM05D006086 ORTHO05D007396 5.9e-18 93.6 64 71.9
Zm00001eb107360 Zea mays HOM05D006086 ORTHO05D007396 5.9e-18 93.6 59 74.6
Gohir.D11G232700 Gossypium hirsutum HOM05D006086 ORTHO05D007396 7.6e-18 93.2 62 67.7
Medtr7g095120 Medicago truncatula HOM05D006086 ORTHO05D007396 7.6e-18 93.2 62 71.0
CiPaw.08G106900 Carya illinoinensis HOM05D006086 ORTHO05D007396 1.0e-17 92.8 57 73.7
Gorai.003G066200 Gossypium raimondii HOM05D006086 ORTHO05D007396 1.0e-17 92.8 62 67.7
Os03g0806800 Oryza sativa ssp. japonica HOM05D006086 ORTHO05D007396 1.0e-17 92.8 54 75.9
Lalb_Chr02g0142691 Lupinus albus HOM05D006086 ORTHO05D007396 1.7e-17 92.0 52 78.8
ATR0737G002 Amborella trichopoda HOM05D006086 ORTHO05D007396 6.5e-17 90.1 67 67.2
COL.COLO4_12126 Corchorus olitorius HOM05D006086 ORTHO05D007396 4.2e-16 87.4 65 64.6
Medtr5g006220 Medicago truncatula HOM05D006086 ORTHO05D007396 5.5e-16 87.0 57 70.2
Os07g0204400 Oryza sativa ssp. japonica HOM05D006086 ORTHO05D007396 7.2e-16 86.7 54 68.5
Hund09501 Selenicereus undatus HOM05D006086 ORTHO05D007396 1.6e-15 85.5 63 65.1
CSS0043804 Camellia sinensis var. sinensis HOM05D006086 ORTHO05D007396 4.6e-15 84.0 64 68.8
Dinv32919 Davidia involucrata HOM05D001893 ORTHO05D007396 1.3e-14 82.4 53 71.7
Lalb_Chr07g0189661 Lupinus albus HOM05D006086 ORTHO05D007396 1.3e-14 82.4 61 65.6
CsaV3_7G028010 Cucumis sativus L. HOM05D006086 ORTHO05D007396 5.1e-14 80.5 58 69.0
Cc07_g10970 Coffea canephora HOM05D006086 ORTHO05D007396 8.7e-14 79.7 56 66.1
ClCG09G007150 Citrullus lanatus HOM05D006086 ORTHO05D007396 1.5e-13 79.0 64 67.2
BraA03t13422Z Brassica rapa HOM05D006086 ORTHO05D007396 3.3e-13 77.8 49 75.5
HanXRQChr04g0118911 Helianthus annuus HOM05D006086 ORTHO05D007396 3.3e-13 77.8 54 64.8
Oeu034961.1 Olea europaea HOM05D006086 ORTHO05D007396 3.3e-13 77.8 53 62.3
Lsat_1_v5_gn_8_56520 Lactuca sativa HOM05D006086 ORTHO05D007396 3.1e-11 71.2 54 61.1
Rhsim02G0023700 Rhododendron simsii HOM05D006086 ORTHO05D007396 5.3e-11 70.5 57 61.4
Medtr5g006260 Medicago truncatula HOM05D006086 ORTHO05D007396 2.9e-09 64.7 81 42.0
Actinidia00772 Actinidia chinensis HOM05D001893 ORTHO05D001914 3.2e-08 61.2 40 67.5
SEGI_00264 Sequoiadendron giganteum HOM05D006086 ORTHO05D007396 5.5e-08 60.5 53 52.8
SEGI_12043 Sequoiadendron giganteum HOM05D006086 ORTHO05D007396 5.5e-08 60.5 51 56.9
SEGI_39026 Sequoiadendron giganteum HOM05D006086 ORTHO05D007396 5.5e-08 60.5 44 61.4
Mapoly0080s0018 Marchantia polymorpha HOM05D006086 ORTHO05D007396 7.2e-08 60.1 63 38.1
DCAR_012810 Daucus carota HOM05D002570 ORTHO05D002689 9.4e-08 59.7 55 45.5
SEGI_15030 Sequoiadendron giganteum HOM05D002570 ORTHO05D002689 7.9e-07 56.6 64 42.2
Pp3c4_16391 Physcomitrium patens HOM05D002570 ORTHO05D002689 5.1e-06 53.9 67 35.8


User provided reference genes

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