Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01017906001 Vitis vinifera HOM05D004695 ORTHO05D005372 1.4e-60 236.1 119 100.0
Thecc.01G113400 Theobroma cacao HOM05D004695 ORTHO05D005372 1.0e-39 166.8 117 74.4
QL06p003781 Quercus lobata HOM05D004695 ORTHO05D005372 3.3e-38 161.8 120 74.2
Hma1.2p1_0995F.1_g245790 Hydrangea macrophylla HOM05D004695 ORTHO05D005372 2.6e-35 152.1 118 72.0
Thecc.04G224700 Theobroma cacao HOM05D004695 ORTHO05D005372 4.9e-34 147.9 97 76.3
Manes.03G182700 Manihot esculenta HOM05D004695 ORTHO05D005372 6.5e-34 147.5 117 66.7
Aqoxy2G03294 Aquilegia oxysepala HOM05D004695 ORTHO05D005372 8.4e-34 147.1 112 67.0
Nn1g02189 Nelumbo nucifera HOM05D004695 ORTHO05D005372 1.9e-33 146.0 122 63.9
Gorai.003G047400 Gossypium raimondii HOM05D004695 ORTHO05D005372 3.2e-33 145.2 118 67.8
Manes.15G024700 Manihot esculenta HOM05D004695 ORTHO05D005372 7.1e-33 144.1 116 68.1
Duzib264G0758 Durio zibethinus HOM05D004695 ORTHO05D005372 2.1e-32 142.5 122 69.7
Gohir.A02G135400 Gossypium hirsutum HOM05D004695 ORTHO05D005372 2.7e-32 142.1 118 66.9
Gohir.D03G046400 Gossypium hirsutum HOM05D004695 ORTHO05D005372 4.6e-32 141.4 118 66.9
TAR636G3528 Trochodendron aralioides HOM05D004695 ORTHO05D005372 4.6e-32 141.4 117 64.1
Duzib147G1031 Durio zibethinus HOM05D004695 ORTHO05D005372 1.0e-31 140.2 128 65.6
COL.COLO4_11008 Corchorus olitorius HOM05D004695 ORTHO05D005372 3.0e-31 138.7 123 69.9
Glyma.15G105500 Glycine max HOM05D004695 ORTHO05D005372 3.0e-31 138.7 116 62.1
CiPaw.01G161500 Carya illinoinensis HOM05D004695 ORTHO05D005372 2.5e-30 135.6 120 65.8
Ciclev10006235m.g Citrus clementina HOM05D004695 ORTHO05D005372 2.5e-30 135.6 118 67.8
Glyma.13G207100 Glycine max HOM05D004695 ORTHO05D005372 9.6e-30 133.7 117 60.7
Potri.008G204100 Populus trichocarpa HOM05D004695 ORTHO05D005372 9.6e-30 133.7 118 65.3
Prupe.1G153300 Prunus persica HOM05D004695 ORTHO05D005372 6.2e-29 131.0 115 67.0
Gohir.D10G104100 Gossypium hirsutum HOM05D004695 ORTHO05D005372 1.1e-28 130.2 116 64.7
Gorai.011G113700 Gossypium raimondii HOM05D004695 ORTHO05D005372 1.1e-28 130.2 120 62.5
Lalb_Chr15g0087411 Lupinus albus HOM05D004695 ORTHO05D005372 1.4e-28 129.8 116 60.3
Gohir.A10G084407 Gossypium hirsutum HOM05D004695 ORTHO05D005372 1.8e-28 129.4 120 61.7
Nitab4.5_0000630g0080 Nicotiana tabacum HOM05D004695 ORTHO05D005372 5.3e-28 127.9 120 62.5
Actinidia23502 Actinidia chinensis HOM05D004695 ORTHO05D005372 6.9e-28 127.5 127 59.1
RcHm_v2.0_Chr4g0417511 Rosa chinensis HOM05D004695 ORTHO05D005372 9.0e-28 127.1 125 60.8
Lj4g0022767 Lotus japonicus HOM05D004695 ORTHO05D005372 1.2e-27 126.7 113 61.9
MD13G1185600 Malus domestica HOM05D004695 ORTHO05D005372 1.2e-27 126.7 120 60.8
TWI73G0302 Tripterygium wilfordii HOM05D004695 ORTHO05D005372 2.0e-27 125.9 129 65.1
MBI17_g29941_MAGBIO Magnolia biondii HOM05D004695 ORTHO05D005372 2.6e-27 125.6 104 67.3
Peaxi162Scf00134g02026 Petunia axillaris HOM05D004695 ORTHO05D005372 2.6e-27 125.6 117 62.4
Haze_00944 Corylus avellana HOM05D004695 ORTHO05D005372 3.4e-27 125.2 121 62.8
Glyma.07G258100 Glycine max HOM05D004695 ORTHO05D005372 3.4e-27 125.2 116 59.5
Phvul.006G151900 Phaseolus vulgaris HOM05D004695 ORTHO05D005372 4.5e-27 124.8 116 59.5
Dinv38408 Davidia involucrata HOM05D004695 ORTHO05D005372 7.6e-27 124.0 93 72.0
VMungo0540G1940 Vigna mungo HOM05D004695 ORTHO05D005372 1.0e-26 123.6 116 56.9
Cfa015601 Carpinus fangiana HOM05D004695 ORTHO05D005372 1.3e-26 123.2 126 61.9
Lalb_Chr18g0056181 Lupinus albus HOM05D004695 ORTHO05D005372 2.9e-26 122.1 116 55.2
Atru.chr4.2536 Acer truncatum HOM05D004695 ORTHO05D005372 3.8e-26 121.7 99 69.7
Rhsim04G0203400 Rhododendron simsii HOM05D004695 ORTHO05D005372 3.8e-26 121.7 129 56.6
Dinv44493 Davidia involucrata HOM05D003236 ORTHO05D003620 5.0e-26 121.3 87 74.7
FvH4_4g14800 Fragaria vesca HOM05D004695 ORTHO05D005372 5.0e-26 121.3 100 67.0
FAN12G3688 Fragaria x ananassa HOM05D004695 ORTHO05D005372 5.0e-26 121.3 100 67.0
TWI09G0501 Tripterygium wilfordii HOM05D004695 ORTHO05D005372 6.5e-26 120.9 125 64.0
Cc03_g03270 Coffea canephora HOM05D004695 ORTHO05D005372 8.4e-26 120.6 122 55.7
FAN07G1591 Fragaria x ananassa HOM05D004695 ORTHO05D005372 1.1e-25 120.2 99 66.7
FAN22G2275 Fragaria x ananassa HOM05D004695 ORTHO05D005372 1.9e-25 119.4 100 66.0
Sabra08G0157600 Salix brachista HOM05D004695 ORTHO05D005372 2.5e-25 119.0 111 63.1
Medtr2g022610 Medicago truncatula HOM05D004695 ORTHO05D005372 4.2e-25 118.2 113 58.4
Duzib187G0357 Durio zibethinus HOM05D004695 ORTHO05D005372 7.2e-25 117.5 114 61.4
MSTRG.10006 Avicennia marina HOM05D004695 ORTHO05D005372 1.2e-24 116.7 116 56.0
CiPaw.02G093500 Carya illinoinensis HOM05D004695 ORTHO05D005372 1.2e-24 116.7 121 62.8
Psat1g182680 Pisum sativum HOM05D004695 ORTHO05D005372 2.1e-24 115.9 113 58.4
Ca_00631_v3 Cicer arietinum L. HOM05D004695 ORTHO05D005372 2.7e-24 115.5 117 56.4
COL.COLO4_26631 Corchorus olitorius HOM05D004695 ORTHO05D005372 3.5e-24 115.2 95 66.3
Medtr4g131720 Medicago truncatula HOM05D004695 ORTHO05D005372 3.5e-24 115.2 113 62.8
TPR.G912 Trifolium pratense HOM05D004695 ORTHO05D005372 6.1e-24 114.4 115 57.4
Eucgr.B01119 Eucalyptus grandis HOM05D004695 ORTHO05D005372 2.3e-23 112.5 123 56.1
SGA_v2.0_scaffold39G15314 Striga asiatica HOM05D004695 ORTHO05D005372 3.9e-23 111.7 123 56.9
HanXRQChr10g0311131 Helianthus annuus HOM05D004695 ORTHO05D005372 5.1e-23 111.3 127 51.2
Actinidia36986 Actinidia chinensis HOM05D004695 ORTHO05D005372 1.1e-22 110.2 122 56.6
Nitab4.5_0015975g0010 Nicotiana tabacum HOM05D004695 ORTHO05D005372 1.1e-22 110.2 124 56.5
PGSC0003DMG400008993 Solanum tuberosum HOM05D004695 ORTHO05D005372 1.1e-22 110.2 126 57.9
arahy.Tifrunner.gnm1.ann1.NGDM9G Arachis hypogaea HOM05D004695 ORTHO05D005372 3.3e-22 108.6 120 52.5
arahy.Tifrunner.gnm1.ann1.P3SWUI Arachis hypogaea HOM05D004695 ORTHO05D005372 3.3e-22 108.6 120 52.5
PSO170G6030 Papaver somniferum HOM05D004695 ORTHO05D005372 4.3e-22 108.2 120 60.8
TPR.G36993 Trifolium pratense HOM05D004695 ORTHO05D005372 7.4e-22 107.5 113 57.5
PSO302G0161 Papaver somniferum HOM05D004695 ORTHO05D005372 2.8e-21 105.5 110 63.6
CANSAT78G0872 Cannabis sativa HOM05D004695 ORTHO05D005372 4.8e-21 104.8 102 63.7
Phvul.003G091400 Phaseolus vulgaris HOM05D004695 ORTHO05D005372 1.1e-20 103.6 105 58.1
MBI19_g16320_MAGBIO Magnolia biondii HOM05D004695 ORTHO05D005372 1.4e-20 103.2 119 52.9
Solyc01g079830.3 Solanum lycopersicum HOM05D004695 ORTHO05D005372 1.4e-20 103.2 126 56.3
MBI19_g46840_MAGBIO Magnolia biondii HOM05D004695 ORTHO05D005372 3.1e-20 102.1 119 52.1
arahy.Tifrunner.gnm1.ann1.6BH6U4 Arachis hypogaea HOM05D004695 ORTHO05D005372 1.2e-19 100.1 128 52.3
DCAR_030605 Daucus carota HOM05D004695 ORTHO05D005372 1.7e-18 96.3 127 54.3
Oeu042788.1 Olea europaea HOM05D004695 ORTHO05D005372 1.7e-18 96.3 109 50.5
PGR142G2632 Punica granatum HOM05D004695 ORTHO05D005372 1.7e-18 96.3 141 53.2
Cpa.g.sc147.16 Carica papaya HOM05D004695 ORTHO05D005372 2.9e-18 95.5 79 67.1
DCAR_002402 Daucus carota HOM05D004695 ORTHO05D005372 3.8e-18 95.1 124 53.2
VMungo1215G1766 Vigna mungo HOM05D004695 ORTHO05D005372 5.0e-18 94.7 107 56.1
Psat4g008520 Pisum sativum HOM05D004695 ORTHO05D005372 1.4e-17 93.2 112 57.1
Sed0015868 Sechium edule HOM05D004695 ORTHO05D005372 1.9e-17 92.8 127 50.4
SalBow2G2333 Salvia bowleyana HOM05D004695 ORTHO05D005372 2.5e-17 92.4 127 48.8
Lj6g0025020 Lotus japonicus HOM05D004695 ORTHO05D005372 3.2e-17 92.0 101 53.5
THA.LOC104822307 Tarenaya hassleriana HOM05D004695 ORTHO05D005372 3.2e-17 92.0 126 48.4
CsaV3_3G013590 Cucumis sativus L. HOM05D004695 ORTHO05D005372 7.2e-17 90.9 127 49.6
ClCG05G005340 Citrullus lanatus HOM05D004695 ORTHO05D005372 9.4e-17 90.5 126 51.6
THA.LOC104818805 Tarenaya hassleriana HOM05D004695 ORTHO05D005372 9.4e-17 90.5 141 48.9
HanXRQChr12g0359551 Helianthus annuus HOM05D004695 ORTHO05D005372 2.1e-16 89.4 131 44.3
ECA234G1541 Erigeron canadensis HOM05D000219 ORTHO05D004649 2.3e-15 85.9 69 66.7
Peaxi162Scf00134g00214 Petunia axillaris HOM05D004695 ORTHO05D005372 5.1e-15 84.7 78 56.4
Thhalv10021691m.g Eutrema salsugineum HOM05D004695 ORTHO05D005372 8.8e-15 84.0 109 52.3
Sc19g0004420 Simmondsia chinensis HOM05D004695 ORTHO05D005372 5.7e-14 81.3 123 52.0
Lsat_1_v5_gn_5_74361 Lactuca sativa HOM05D004695 ORTHO05D005372 7.4e-14 80.9 98 51.0
CARHR193760 Cardamine hirsuta HOM05D004695 ORTHO05D005372 9.7e-14 80.5 118 45.8
AUR62038192 Chenopodium quinoa HOM05D004695 ORTHO05D005372 1.3e-13 80.1 95 54.7
Migut.G00305 Erythranthe guttata HOM05D004695 ORTHO05D005372 1.7e-13 79.7 131 45.0
EL10As3g23294 Beta vulgaris HOM05D004695 ORTHO05D005372 3.7e-13 78.6 127 48.8
BcaC05g30060 Brassica carinata HOM05D004695 ORTHO05D005372 3.7e-13 78.6 109 47.7
AL3G16910 Arabidopsis lyrata HOM05D004695 ORTHO05D005372 4.8e-13 78.2 109 48.6
Sp6g25190 Schrenkiella parvula HOM05D004695 ORTHO05D005372 4.8e-13 78.2 97 50.5
AT3G06070 Arabidopsis thaliana HOM05D004695 ORTHO05D005372 6.3e-13 77.8 111 46.8
C05p61180 Brassica napus HOM05D004695 ORTHO05D005372 8.2e-13 77.4 107 44.9
AT5G19190 Arabidopsis thaliana HOM05D004695 ORTHO05D005372 1.8e-12 76.3 109 45.9
unitig_748.g8553 Utricularia gibba HOM05D004695 ORTHO05D005372 1.8e-12 76.3 120 46.7
A05p41930 Brassica napus HOM05D004695 ORTHO05D005372 2.4e-12 75.9 109 46.8
Carub.0003s0551 Capsella rubella HOM05D004695 ORTHO05D005372 2.4e-12 75.9 112 49.1
Sp3g05020 Schrenkiella parvula HOM05D004695 ORTHO05D005372 2.4e-12 75.9 103 48.5
Sed0027149 Sechium edule HOM05D004695 ORTHO05D005372 3.1e-12 75.5 103 48.5
arahy.Tifrunner.gnm1.ann1.P7T279 Arachis hypogaea HOM05D004695 ORTHO05D005372 4.1e-12 75.1 121 46.3
Carub.0006s1752 Capsella rubella HOM05D004695 ORTHO05D005372 5.3e-12 74.7 111 45.0
AL6G30640 Arabidopsis lyrata HOM05D004695 ORTHO05D005372 6.9e-12 74.3 109 45.0
BcaB01g05138 Brassica carinata HOM05D004695 ORTHO05D005372 6.9e-12 74.3 97 50.5
C03p10990 Brassica napus HOM05D004695 ORTHO05D005372 6.9e-12 74.3 97 50.5
BolC3t13568H Brassica oleracea HOM05D004695 ORTHO05D005372 6.9e-12 74.3 97 50.5
DCAR_027181 Daucus carota HOM05D004695 ORTHO05D005372 9.1e-12 73.9 134 42.5
A03p09410 Brassica napus HOM05D004695 ORTHO05D005372 1.2e-11 73.6 97 49.5
BraA03t10259Z Brassica rapa HOM05D004695 ORTHO05D005372 1.2e-11 73.6 97 49.5
CARHR080580 Cardamine hirsuta HOM05D004695 ORTHO05D005372 1.2e-11 73.6 109 48.6
Thhalv10014937m.g Eutrema salsugineum HOM05D004695 ORTHO05D005372 1.2e-11 73.6 107 45.8
Migut.N00157 Erythranthe guttata HOM05D004695 ORTHO05D005372 1.5e-11 73.2 118 41.5
Glyma.17G015900 Glycine max HOM05D004695 ORTHO05D005372 1.5e-11 73.2 92 48.9
BraA02t05489Z Brassica rapa HOM05D004695 ORTHO05D005372 2.0e-11 72.8 123 44.7
A02p05310 Brassica napus HOM05D004695 ORTHO05D005372 4.5e-11 71.6 121 43.8
BcaC01g04322 Brassica carinata HOM05D004695 ORTHO05D005372 5.9e-11 71.2 117 41.0
C03p41960 Brassica napus HOM05D004695 ORTHO05D005372 5.9e-11 71.2 117 41.0
unitig_32.g11733 Utricularia gibba HOM05D004695 ORTHO05D005372 5.9e-11 71.2 102 48.0
BolC3t16478H Brassica oleracea HOM05D004695 ORTHO05D005372 7.7e-11 70.9 117 41.0
Aa31LG11G10450 Aethionema arabicum HOM05D004695 ORTHO05D005372 1.0e-10 70.5 92 48.9
A03p34500 Brassica napus HOM05D004695 ORTHO05D005372 1.0e-10 70.5 120 41.7
BraA01t04453Z Brassica rapa HOM05D004695 ORTHO05D005372 1.0e-10 70.5 107 45.8
BraA03t12627Z Brassica rapa HOM05D004695 ORTHO05D005372 1.0e-10 70.5 120 41.7
BcaB08g36595 Brassica carinata HOM05D004695 ORTHO05D005372 2.2e-10 69.3 102 45.1
BcaC03g13650 Brassica carinata HOM05D004695 ORTHO05D005372 2.2e-10 69.3 106 45.3
BNapus_Darmor_BZH_scaffold_38p02720 Brassica napus HOM05D004695 ORTHO05D005372 2.2e-10 69.3 106 45.3
BolC2t06944H Brassica oleracea HOM05D004695 ORTHO05D005372 2.2e-10 69.3 106 45.3
BcaB04g19218 Brassica carinata HOM05D004695 ORTHO05D005372 6.5e-10 67.8 109 43.1
BcaB04g19219 Brassica carinata HOM05D004695 ORTHO05D005372 6.5e-10 67.8 109 43.1
BcaC09g47874 Brassica carinata HOM05D004695 ORTHO05D005372 6.5e-10 67.8 107 45.8
BolC1t05639H Brassica oleracea HOM05D004695 ORTHO05D005372 6.5e-10 67.8 107 45.8
A10p20440 Brassica napus HOM05D004695 ORTHO05D005372 8.5e-10 67.4 105 45.7
BraA10t44114Z Brassica rapa HOM05D004695 ORTHO05D005372 8.5e-10 67.4 105 45.7
BcaB01g04872 Brassica carinata HOM05D004695 ORTHO05D005372 1.1e-09 67.0 97 49.5
BcaB05g23377 Brassica carinata HOM05D004695 ORTHO05D005372 1.1e-09 67.0 110 45.5
BcaC04g18589 Brassica carinata HOM05D004695 ORTHO05D005372 1.4e-09 66.6 104 47.1
C09p57070 Brassica napus HOM05D004695 ORTHO05D005372 1.4e-09 66.6 104 47.1
MBI17_g27868_MAGBIO Magnolia biondii HOM05D004695 ORTHO05D005372 1.4e-09 66.6 42 71.4
Aa31LG5G16560 Aethionema arabicum HOM05D004695 ORTHO05D005372 1.9e-09 66.2 102 46.1
SGA_v2.0_scaffold39G15310 Striga asiatica HOM05D004695 ORTHO05D005372 4.2e-09 65.1 86 46.5
HPP92_003158 Vanilla planifolia HOM05D004695 ORTHO05D005372 5.5e-09 64.7 121 38.8
BcaB04g21321 Brassica carinata HOM05D004695 ORTHO05D005372 9.4e-09 63.9 100 44.0
CsaV3_6G015120 Cucumis sativus L. HOM05D039226 ORTHO05D005372 2.3e-07 59.3 107 40.2
HPP92_000387 Vanilla planifolia HOM05D004695 ORTHO05D005372 4.4e-06 55.1 104 38.5
MELO3C021409.2 Cucumis melo HOM05D039226 ORTHO05D005372 5.7e-06 54.7 111 37.8
ClCG06G005870 Citrullus lanatus HOM05D039226 ORTHO05D005372 7.4e-06 54.3 110 40.0


User provided reference genes

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