Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01017886001 Vitis vinifera HOM05D004860 ORTHO05D006366 5.7e-175 617.5 306 100.0
TAR636G2819 Trochodendron aralioides HOM05D004860 ORTHO05D006366 3.8e-155 551.6 306 88.6
TAR365G0160 Trochodendron aralioides HOM05D004860 ORTHO05D006366 1.4e-152 543.1 306 87.3
CSS0038220 Camellia sinensis var. sinensis HOM05D004860 ORTHO05D006366 5.2e-152 541.2 301 87.7
QL06p004255 Quercus lobata HOM05D004860 ORTHO05D006366 1.5e-151 539.7 303 88.1
Potri.008G202300 Populus trichocarpa HOM05D004860 ORTHO05D006366 1.3e-150 536.6 306 85.9
Nn4g26191 Nelumbo nucifera HOM05D004860 ORTHO05D006366 6.3e-150 534.3 306 85.9
CiPaw.02G092200 Carya illinoinensis HOM05D004860 ORTHO05D006366 3.1e-149 531.9 305 85.6
MD16G1183500 Malus domestica HOM05D004860 ORTHO05D006366 5.3e-149 531.2 306 85.3
TWI73G0632 Tripterygium wilfordii HOM05D004860 ORTHO05D006366 7.0e-149 530.8 306 85.6
Actinidia40192 Actinidia chinensis HOM05D004860 ORTHO05D006366 1.2e-148 530.0 307 84.7
CANSAT78G2493 Cannabis sativa HOM05D004860 ORTHO05D006366 1.6e-148 529.6 306 85.0
Eucgr.D02658 Eucalyptus grandis HOM05D004860 ORTHO05D006366 2.6e-148 528.9 306 85.0
Thecc.04G221400 Theobroma cacao HOM05D004860 ORTHO05D006366 2.2e-147 525.8 305 84.3
ClCG05G005460 Citrullus lanatus HOM05D004860 ORTHO05D006366 2.9e-147 525.4 306 83.3
Cc03_g03100 Coffea canephora HOM05D004860 ORTHO05D006366 2.9e-147 525.4 308 83.1
PGR031G2771 Punica granatum HOM05D004860 ORTHO05D006366 3.8e-147 525.0 294 87.1
Glyma.17G017300 Glycine max HOM05D004860 ORTHO05D006366 5.0e-147 524.6 306 83.7
Dinv38393 Davidia involucrata HOM05D001530 ORTHO05D004168 8.5e-147 523.9 299 88.0
MELO3C006570.2 Cucumis melo HOM05D004860 ORTHO05D006366 1.1e-146 523.5 305 83.3
ECA240G4413 Erigeron canadensis HOM05D004860 ORTHO05D006366 1.1e-146 523.5 302 83.4
COL.COLO4_21645 Corchorus olitorius HOM05D004860 ORTHO05D006366 1.5e-146 523.1 308 84.1
FAN07G1456 Fragaria x ananassa HOM05D004860 ORTHO05D006366 5.5e-146 521.2 306 83.0
MD13G1182900 Malus domestica HOM05D004860 ORTHO05D006366 5.5e-146 521.2 306 83.7
Gohir.A05G316600 Gossypium hirsutum HOM05D004860 ORTHO05D006366 1.6e-145 519.6 296 85.5
Duzib268G1873 Durio zibethinus HOM05D004860 ORTHO05D006366 2.1e-145 519.2 305 83.3
CsaV3_3G013760 Cucumis sativus L. HOM05D004860 ORTHO05D006366 3.6e-145 518.5 305 82.6
FvH4_4g14470 Fragaria vesca HOM05D004860 ORTHO05D006366 3.6e-145 518.5 292 86.6
Glyma.07G256800 Glycine max HOM05D004860 ORTHO05D006366 3.6e-145 518.5 306 82.7
RcHm_v2.0_Chr4g0418381 Rosa chinensis HOM05D004860 ORTHO05D006366 4.7e-145 518.1 306 82.7
FAN12G3962 Fragaria x ananassa HOM05D004860 ORTHO05D006366 6.1e-145 517.7 292 86.6
Lj4g0005512 Lotus japonicus HOM05D004860 ORTHO05D006366 6.1e-145 517.7 306 83.3
FAN22G2324 Fragaria x ananassa HOM05D004860 ORTHO05D006366 1.4e-144 516.5 306 82.7
Duzib212G0960 Durio zibethinus HOM05D004860 ORTHO05D006366 2.3e-144 515.8 298 84.6
PSO170G1688 Papaver somniferum HOM05D004860 ORTHO05D006366 2.3e-144 515.8 308 83.1
PSO407G0112 Papaver somniferum HOM05D004860 ORTHO05D006366 3.0e-144 515.4 308 83.1
Sed0000368 Sechium edule HOM05D004860 ORTHO05D006366 3.0e-144 515.4 307 83.4
Atru.chr4.2574 Acer truncatum HOM05D004860 ORTHO05D006366 6.7e-144 514.2 304 82.9
Ciclev10005293m.g Citrus clementina HOM05D004860 ORTHO05D006366 6.7e-144 514.2 306 82.7
Aqoxy2G03261 Aquilegia oxysepala HOM05D004860 ORTHO05D006366 1.2e-143 513.5 290 86.6
Manes.15G022900 Manihot esculenta HOM05D004860 ORTHO05D006366 4.4e-143 511.5 306 81.7
Lalb_Chr07g0177321 Lupinus albus HOM05D004860 ORTHO05D006366 5.7e-143 511.1 292 84.2
Oeu029304.1 Olea europaea HOM05D004860 ORTHO05D006366 5.7e-143 511.1 295 83.4
Cfa015580 Carpinus fangiana HOM05D004860 ORTHO05D006366 7.5e-143 510.8 306 84.0
HanXRQChr09g0248101 Helianthus annuus HOM05D004860 ORTHO05D006366 9.7e-143 510.4 291 83.8
THA.LOC104818790 Tarenaya hassleriana HOM05D004860 ORTHO05D006366 1.3e-142 510.0 301 83.4
Ah.07g203980 Amaranthus hybridus HOM05D004860 ORTHO05D006366 1.7e-142 509.6 302 82.5
Medtr4g117310 Medicago truncatula HOM05D004860 ORTHO05D006366 2.8e-142 508.8 308 81.8
Ca_21591_v3 Cicer arietinum L. HOM05D004860 ORTHO05D006366 8.2e-142 507.3 305 82.0
Gorai.009G340700 Gossypium raimondii HOM05D004860 ORTHO05D006366 8.2e-142 507.3 310 81.6
Thhalv10013904m.g Eutrema salsugineum HOM05D004860 ORTHO05D006366 1.1e-141 506.9 303 82.8
Phvul.003G093000 Phaseolus vulgaris HOM05D004860 ORTHO05D006366 1.1e-141 506.9 304 81.2
TPR.G20138 Trifolium pratense HOM05D004860 ORTHO05D006366 1.1e-141 506.9 309 81.6
THA.LOC104822311 Tarenaya hassleriana HOM05D004860 ORTHO05D006366 1.8e-141 506.1 293 83.6
AT5G19050 Arabidopsis thaliana HOM05D004860 ORTHO05D006366 3.1e-141 505.4 307 81.8
BcaC04g18624 Brassica carinata HOM05D004860 ORTHO05D006366 3.1e-141 505.4 304 82.2
arahy.Tifrunner.gnm1.ann1.PDW3QZ Arachis hypogaea HOM05D004860 ORTHO05D006366 5.3e-141 504.6 306 80.7
Solyc01g080140.3 Solanum lycopersicum HOM05D004860 ORTHO05D006366 5.3e-141 504.6 299 80.9
AL6G30430 Arabidopsis lyrata HOM05D004860 ORTHO05D006366 7.0e-141 504.2 307 81.8
arahy.Tifrunner.gnm1.ann1.K193BP Arachis hypogaea HOM05D004860 ORTHO05D006366 7.0e-141 504.2 306 81.0
BolC3t13554H Brassica oleracea HOM05D004860 ORTHO05D006366 7.0e-141 504.2 293 83.6
Carub.0006s1737 Capsella rubella HOM05D004860 ORTHO05D006366 7.0e-141 504.2 307 81.4
Psat4g031440 Pisum sativum HOM05D004860 ORTHO05D006366 9.1e-141 503.8 305 81.6
Sopen01g031920 Solanum pennellii HOM05D004860 ORTHO05D006366 1.2e-140 503.4 299 80.9
Sp6g25330 Schrenkiella parvula HOM05D004860 ORTHO05D006366 2.7e-140 502.3 303 82.2
BcaB01g04878 Brassica carinata HOM05D004860 ORTHO05D006366 3.5e-140 501.9 293 83.3
BcaB01g05289 Brassica carinata HOM05D004860 ORTHO05D006366 3.5e-140 501.9 293 83.3
BolC9t58612H Brassica oleracea HOM05D004860 ORTHO05D006366 3.5e-140 501.9 303 81.8
Migut.N00151 Erythranthe guttata HOM05D004860 ORTHO05D006366 3.5e-140 501.9 295 81.7
Haze_00965 Corylus avellana HOM05D004860 ORTHO05D006366 4.5e-140 501.5 384 69.0
Aa31LG11G10670 Aethionema arabicum HOM05D004860 ORTHO05D006366 5.9e-140 501.1 309 81.6
A10p20640 Brassica napus HOM05D004860 ORTHO05D006366 5.9e-140 501.1 293 83.3
AUR62030079 Chenopodium quinoa HOM05D004860 ORTHO05D006366 5.9e-140 501.1 284 84.9
C09p57430 Brassica napus HOM05D004860 ORTHO05D006366 1.0e-139 500.4 304 81.6
SalBow5G0733 Salvia bowleyana HOM05D004860 ORTHO05D006366 1.3e-139 500.0 310 79.0
SalBow5G4413 Salvia bowleyana HOM05D004860 ORTHO05D006366 1.3e-139 500.0 310 79.0
BraA03t10247Z Brassica rapa HOM05D004860 ORTHO05D006366 1.7e-139 499.6 293 83.3
MSTRG.24756 Avicennia marina HOM05D004860 ORTHO05D006366 2.2e-139 499.2 295 81.7
CDE02G3435 Ceratophyllum demersum HOM05D004860 ORTHO05D006366 2.2e-139 499.2 287 83.3
Nitab4.5_0001247g0010 Nicotiana tabacum HOM05D004860 ORTHO05D006366 3.8e-139 498.4 299 81.9
BcaB08g36622 Brassica carinata HOM05D004860 ORTHO05D006366 5.0e-139 498.0 293 82.6
BraA10t44127Z Brassica rapa HOM05D004860 ORTHO05D006366 5.0e-139 498.0 293 82.9
CARHR193940 Cardamine hirsuta HOM05D004860 ORTHO05D006366 5.0e-139 498.0 308 80.5
Lj3C761T9 Lonicera japonica HOM05D004860 ORTHO05D006366 5.0e-139 498.0 303 78.2
SEGI_28969 Sequoiadendron giganteum HOM05D004860 ORTHO05D006366 1.1e-138 496.9 288 82.3
Ah.13g074180 Amaranthus hybridus HOM05D004860 ORTHO05D006366 1.9e-138 496.1 302 79.8
MBI17_g12009_MAGBIO Magnolia biondii HOM05D004860 ORTHO05D006366 9.4e-138 493.8 305 81.6
EL10Ac3g06352 Beta vulgaris HOM05D004860 ORTHO05D006366 1.6e-137 493.0 339 73.5
Zm00001eb303280 Zea mays HOM05D004860 ORTHO05D006366 3.6e-137 491.9 296 80.4
Os07g0211800 Oryza sativa ssp. japonica HOM05D004860 ORTHO05D006366 8.0e-137 490.7 288 81.6
Prupe.1G151200 Prunus persica HOM05D004860 ORTHO05D006366 4.4e-135 485.0 270 87.0
C03p10800 Brassica napus HOM05D004860 ORTHO05D006366 5.7e-135 484.6 284 83.8
Cpa.g.sc16.26 Carica papaya HOM05D004860 ORTHO05D006366 1.4e-133 479.9 307 78.2
CiPaw.01G159800 Carya illinoinensis HOM05D004860 ORTHO05D006366 5.4e-133 478.0 306 78.8
Lsat_1_v5_gn_7_67361 Lactuca sativa HOM05D004860 ORTHO05D006366 5.4e-133 478.0 303 77.9
unitig_8.g2879 Utricularia gibba HOM05D004860 ORTHO05D006366 1.2e-132 476.9 310 75.8
Hund12197 Selenicereus undatus HOM05D004860 ORTHO05D000105 1.0e-131 473.8 272 84.6
Peaxi162Scf01766g00011 Petunia axillaris HOM05D004860 ORTHO05D006366 2.9e-131 472.2 305 76.4
CAN.G183.30 Capsicum annuum HOM05D004860 ORTHO05D006366 6.6e-131 471.1 302 78.1
AUR62038223 Chenopodium quinoa HOM05D004860 ORTHO05D006366 1.9e-130 469.5 270 84.4
A03p09270 Brassica napus HOM05D004860 ORTHO05D006366 3.3e-130 468.8 280 82.9
Gohir.D05G318100 Gossypium hirsutum HOM05D004860 ORTHO05D006366 3.0e-128 462.2 296 78.0
Sabra08G0159200 Salix brachista HOM05D004860 ORTHO05D006366 2.8e-126 455.7 306 76.5
Actinidia12990 Actinidia chinensis HOM05D004860 ORTHO05D006366 1.6e-124 449.9 322 73.3
Dinv44480 Davidia involucrata HOM05D001530 ORTHO05D004168 2.0e-124 449.5 298 77.5
Migut.G00288 Erythranthe guttata HOM05D004860 ORTHO05D006366 3.5e-124 448.7 272 80.5
AagrBONN_evm.TU.Sc2ySwM_117.2400 Anthoceros agrestis HOM05D004860 ORTHO05D006366 6.1e-121 438.0 286 72.7
Lj6A565G28 Lonicera japonica HOM05D004860 ORTHO05D006366 8.9e-120 434.1 262 82.1
SMO119G0283 Selaginella moellendorffii HOM05D004860 ORTHO05D006366 5.8e-119 431.4 287 74.2
Pp3c4_4720 Physcomitrium patens HOM05D004860 ORTHO05D006366 1.9e-117 426.4 282 70.9
Rhsim04G0207200 Rhododendron simsii HOM05D004860 ORTHO05D006366 1.7e-115 419.9 296 73.6
vmacro08274 Vaccinium macrocarpon HOM05D004860 ORTHO05D006366 2.3e-115 419.5 281 76.9
Mapoly0095s0018 Marchantia polymorpha HOM05D004860 ORTHO05D006366 5.0e-115 418.3 272 72.4
Nn1g02160 Nelumbo nucifera HOM05D004860 ORTHO05D006366 3.4e-111 405.6 259 79.9
TWI53G0789 Tripterygium wilfordii HOM05D004860 ORTHO05D006366 1.4e-109 400.2 239 82.4
ATR0626G115 Amborella trichopoda HOM05D004860 ORTHO05D006366 6.2e-105 384.8 236 79.7
Manes.03G184900 Manihot esculenta HOM05D004860 ORTHO05D006366 3.1e-104 382.5 225 82.2
SGA_v2.0_scaffold166G38376 Striga asiatica HOM05D004860 ORTHO05D006366 7.8e-100 367.9 263 72.6
SalBow2G3077 Salvia bowleyana HOM05D004860 ORTHO05D006366 1.0e-99 367.5 310 62.9
Oeu017197.2 Olea europaea HOM05D004860 ORTHO05D006366 5.4e-93 345.1 228 76.3
Sc13g0003950 Simmondsia chinensis HOM05D004860 ORTHO05D006366 1.9e-85 320.1 195 83.6
VMungo1215G0515 Vigna mungo HOM05D004860 ORTHO05D006366 1.9e-85 320.1 197 80.7
Eucgr.B01143 Eucalyptus grandis HOM05D004860 ORTHO05D006366 5.1e-67 258.8 153 79.7
Actinidia23474 Actinidia chinensis HOM05D004860 ORTHO05D006366 1.8e-64 250.4 265 53.6
FAN17G0307 Fragaria x ananassa HOM05D004860 ORTHO05D006366 1.5e-63 247.3 139 84.2
SHI00370 Sapria himalayana HOM05D004860 ORTHO05D000023 4.5e-63 245.7 139 87.1
HPP92_027344 Vanilla planifolia HOM05D004860 ORTHO05D006366 1.9e-58 230.3 156 75.6
Hund22791 Selenicereus undatus HOM05D004860 ORTHO05D006366 1.5e-55 220.7 132 78.8
Nitab4.5_0002954g0030 Nicotiana tabacum HOM05D004860 ORTHO05D006366 5.5e-53 212.2 142 75.4
Cc02_g31730 Coffea canephora HOM05D004860 ORTHO05D006366 1.5e-50 204.1 108 85.2
VMungo1215G0712 Vigna mungo HOM05D004860 ORTHO05D006366 5.7e-50 202.2 108 85.2
PRCOL_00003006 Prasinoderma coloniale HOM05D004860 ORTHO05D006366 9.1e-40 168.3 273 43.6
CBR_g23274 Chara braunii HOM05D004860 ORTHO05D006366 3.5e-39 166.4 129 60.5
Cc09_g08330 Coffea canephora HOM05D004860 ORTHO05D006366 3.5e-39 166.4 112 70.5
Cre06.g283034 Chlamydomonas reinhardtii HOM05D004860 ORTHO05D006366 7.4e-34 148.7 307 33.2
Cc01_g03740 Coffea canephora HOM05D004860 ORTHO05D006366 9.7e-34 148.3 117 63.2
SHI00369 Sapria himalayana HOM05D004860 ORTHO05D006366 4.0e-27 126.3 118 60.2
Mapoly0174s0021 Marchantia polymorpha HOM05D004860 ORTHO05D006366 3.5e-23 113.2 87 62.1
DCAR_002416 Daucus carota HOM05D004860 ORTHO05D006366 2.2e-22 110.5 86 61.6
Cfa023854 Carpinus fangiana HOM05D004860 ORTHO05D126341 2.9e-22 110.2 289 31.8
HPP92_027343 Vanilla planifolia HOM05D004860 ORTHO05D006366 1.6e-20 104.4 71 70.4
A02p05180 Brassica napus HOM05D004860 ORTHO05D006366 8.8e-19 98.6 92 59.8
BraA02t05478Z Brassica rapa HOM05D004860 ORTHO05D006366 1.2e-18 98.2 93 60.2
CBR_g23273 Chara braunii HOM05D004860 ORTHO05D006366 1.3e-17 94.7 81 53.1
Lj6C565T4 Lonicera japonica HOM05D004860 ORTHO05D006366 1.3e-17 94.7 53 77.4
THA.LOC104820105 Tarenaya hassleriana HOM05D001530 ORTHO05D004168 4.9e-17 92.8 53 86.8
DCAR_030597 Daucus carota HOM05D004860 ORTHO05D006366 8.3e-17 92.0 52 78.8
Cc00_g00380 Coffea canephora HOM05D004860 ORTHO05D006366 3.1e-16 90.1 53 77.4
Cc11_g00440 Coffea canephora HOM05D004860 ORTHO05D005444 1.8e-11 74.3 37 83.8
HPP92_017189 Vanilla planifolia HOM05D004860 ORTHO05D006366 5.9e-07 59.3 31 87.1
BcaB07g33046 Brassica carinata HOM05D004860 ORTHO05D005738 2.9e-06 57.0 50 62.0


User provided reference genes

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