Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01017758001 Vitis vinifera HOM05D003821 ORTHO05D004449 2.5e-40 168.3 85 100.0
Nn3g21436 Nelumbo nucifera HOM05D000763 ORTHO05D000599 1.1e-14 83.2 52 82.7
Sabra10G0014100 Salix brachista HOM05D003821 ORTHO05D004449 1.4e-14 82.8 51 84.3
Rhsim02G0009100 Rhododendron simsii HOM05D003821 ORTHO05D004449 2.4e-14 82.0 53 79.2
C01p27060 Brassica napus HOM05D003821 ORTHO05D004449 4.1e-14 81.3 46 89.1
Lalb_Chr15g0078581 Lupinus albus HOM05D003821 ORTHO05D004449 4.1e-14 81.3 45 91.1
MD11G1304500 Malus domestica HOM05D003821 ORTHO05D004449 4.1e-14 81.3 45 91.1
Lalb_Chr18g0047131 Lupinus albus HOM05D003821 ORTHO05D004449 9.0e-14 80.1 45 91.1
Cc03_g01940 Coffea canephora HOM05D003821 ORTHO05D004449 1.2e-13 79.7 53 79.2
Haze_04896 Corylus avellana HOM05D003821 ORTHO05D004449 1.2e-13 79.7 57 75.4
Lj4g0002252 Lotus japonicus HOM05D003821 ORTHO05D004449 1.2e-13 79.7 44 93.2
Hund05412 Selenicereus undatus HOM05D003821 ORTHO05D004449 1.2e-13 79.7 50 82.0
TPR.G9594 Trifolium pratense HOM05D003821 ORTHO05D004449 1.2e-13 79.7 45 86.7
BolC7t45268H Brassica oleracea HOM05D003821 ORTHO05D004449 3.4e-13 78.2 45 86.7
BcaB04g18333 Brassica carinata HOM05D003821 ORTHO05D004449 4.5e-13 77.8 49 81.6
Nitab4.5_0000191g0110 Nicotiana tabacum HOM05D003821 ORTHO05D004449 4.5e-13 77.8 61 63.9
QL10p053326 Quercus lobata HOM05D003821 ORTHO05D004449 4.5e-13 77.8 55 74.5
QL10p054532 Quercus lobata HOM05D003821 ORTHO05D004449 4.5e-13 77.8 55 74.5
BraA03t14035Z Brassica rapa HOM05D003821 ORTHO05D004449 5.9e-13 77.4 44 88.6
ATR0580G132 Amborella trichopoda HOM05D003821 ORTHO05D004449 7.7e-13 77.0 45 91.1
Sp7g14190 Schrenkiella parvula HOM05D003821 ORTHO05D004449 1.0e-12 76.6 51 78.4
RcHm_v2.0_Chr6g0293541 Rosa chinensis HOM05D003821 ORTHO05D004449 1.3e-12 76.3 45 84.4
Medtr1g088760 Medicago truncatula HOM05D003821 ORTHO05D004449 1.7e-12 75.9 51 82.4
Medtr7g108615 Medicago truncatula HOM05D003821 ORTHO05D004449 1.7e-12 75.9 45 82.2
GSVIVG01027975001 Vitis vinifera HOM05D003821 ORTHO05D004449 2.9e-12 75.1 46 87.0
RcHm_v2.0_Chr4g0422231 Rosa chinensis HOM05D003821 ORTHO05D004449 3.8e-12 74.7 44 86.4
Ciclev10007067m.g Citrus clementina HOM05D003821 ORTHO05D004449 5.0e-12 74.3 50 74.0
MD03G1285000 Malus domestica HOM05D003821 ORTHO05D004449 5.0e-12 74.3 52 78.8
TPR.G33980 Trifolium pratense HOM05D003821 ORTHO05D004449 5.0e-12 74.3 51 80.4
Sed0001615 Sechium edule HOM05D003821 ORTHO05D004449 6.5e-12 73.9 55 72.7
vmacro08148 Vaccinium macrocarpon HOM05D003821 ORTHO05D004449 6.5e-12 73.9 45 82.2
Nn4g25849 Nelumbo nucifera HOM05D003821 ORTHO05D004449 1.1e-11 73.2 43 83.7
BolC8t48318H Brassica oleracea HOM05D003821 ORTHO05D004449 1.4e-11 72.8 49 79.6
BraA01t02079Z Brassica rapa HOM05D000802 ORTHO05D013138 1.4e-11 72.8 51 78.4
CSS0044842 Camellia sinensis var. sinensis HOM05D003821 ORTHO05D004449 1.4e-11 72.8 50 78.0
THA.LOC104820264 Tarenaya hassleriana HOM05D003821 ORTHO05D004449 1.4e-11 72.8 41 90.2
BraA08t33190Z Brassica rapa HOM05D003821 ORTHO05D004449 1.9e-11 72.4 46 82.6
FvH4_4g18020 Fragaria vesca HOM05D003821 ORTHO05D004449 2.5e-11 72.0 41 87.8
TWI09G0102 Tripterygium wilfordii HOM05D003821 ORTHO05D004449 2.5e-11 72.0 41 85.4
Manes.15G012400 Manihot esculenta HOM05D003821 ORTHO05D004449 3.2e-11 71.6 41 85.4
CANSAT78G0465 Cannabis sativa HOM05D003821 ORTHO05D004449 4.2e-11 71.2 41 85.4
CiPaw.08G097300 Carya illinoinensis HOM05D003821 ORTHO05D004449 4.2e-11 71.2 41 85.4
Atru.chr4.2835 Acer truncatum HOM05D003821 ORTHO05D004449 5.5e-11 70.9 44 77.3
AL7G39490 Arabidopsis lyrata HOM05D003821 ORTHO05D004449 5.5e-11 70.9 41 85.4
AT4G15802 Arabidopsis thaliana HOM05D003821 ORTHO05D004449 5.5e-11 70.9 41 85.4
CSS0020997 Camellia sinensis var. sinensis HOM05D003821 ORTHO05D004449 5.5e-11 70.9 49 77.6
Gohir.D01G051650 Gossypium hirsutum HOM05D003821 ORTHO05D004449 5.5e-11 70.9 48 72.9
Gohir.D08G087850 Gossypium hirsutum HOM05D003821 ORTHO05D004449 5.5e-11 70.9 48 72.9
Gorai.002G124200 Gossypium raimondii HOM05D003821 ORTHO05D004449 5.5e-11 70.9 48 72.9
HanXRQChr06g0169061 Helianthus annuus HOM05D003821 ORTHO05D004449 5.5e-11 70.9 50 72.0
Gorai.004G142200 Gossypium raimondii HOM05D003821 ORTHO05D004449 7.2e-11 70.5 45 77.8
Gorai.005G060300 Gossypium raimondii HOM05D003821 ORTHO05D004449 7.2e-11 70.5 45 80.0
Potri.014G131701 Populus trichocarpa HOM05D003821 ORTHO05D004449 7.2e-11 70.5 41 85.4
MELO3C016019.2 Cucumis melo HOM05D003821 ORTHO05D004449 9.4e-11 70.1 47 76.6
Gohir.D08G106266 Gossypium hirsutum HOM05D003821 ORTHO05D004449 9.4e-11 70.1 47 74.5
Ah.08g213210 Amaranthus hybridus HOM05D003821 ORTHO05D004449 1.6e-10 69.3 57 66.7
CARHR290310 Cardamine hirsuta HOM05D003821 ORTHO05D004449 1.6e-10 69.3 41 82.9
TWI53G1984 Tripterygium wilfordii HOM05D003821 ORTHO05D004449 1.6e-10 69.3 41 82.9
unitig_748.g8733 Utricularia gibba HOM05D003821 ORTHO05D004449 1.6e-10 69.3 47 72.3
Carub.0007s2585 Capsella rubella HOM05D003821 ORTHO05D004449 2.1e-10 68.9 41 82.9
Ca_10352_v3 Cicer arietinum L. HOM05D003821 ORTHO05D004449 2.1e-10 68.9 41 87.8
FvH4_2g25350 Fragaria vesca HOM05D003821 ORTHO05D004449 2.1e-10 68.9 41 82.9
Oeu026313.1 Olea europaea HOM05D003821 ORTHO05D004449 2.1e-10 68.9 41 80.5
Psat3g022560 Pisum sativum HOM05D003821 ORTHO05D004449 2.1e-10 68.9 41 80.5
CiPaw.07G106400 Carya illinoinensis HOM05D003821 ORTHO05D004449 2.7e-10 68.6 41 80.5
Thecc.04G284600 Theobroma cacao HOM05D003821 ORTHO05D004449 6.1e-10 67.4 41 82.9
CSS0048427 Camellia sinensis var. sinensis HOM05D003821 ORTHO05D004449 7.9e-10 67.0 49 75.5
MSTRG.3917 Avicennia marina HOM05D003821 ORTHO05D004449 1.0e-09 66.6 42 78.6
Hma1.2p1_0078F.1_g040550 Hydrangea macrophylla HOM05D003821 ORTHO05D004449 1.4e-09 66.2 39 82.1
CANSAT25G1361 Cannabis sativa HOM05D003821 ORTHO05D004449 5.1e-09 64.3 41 78.0
Migut.G00164 Erythranthe guttata HOM05D003821 ORTHO05D004449 5.1e-09 64.3 41 78.0
Phvul.009G247900 Phaseolus vulgaris HOM05D003821 ORTHO05D004449 6.7e-09 63.9 41 75.6
MSTRG.24794 Avicennia marina HOM05D003821 ORTHO05D004449 1.1e-08 63.2 40 75.0
Gohir.D08G138600 Gossypium hirsutum HOM05D003821 ORTHO05D004449 1.1e-08 63.2 41 75.6
EL10Ac7g17441 Beta vulgaris HOM05D003821 ORTHO05D004449 1.9e-08 62.4 71 53.5
HanXRQChr01g0001301 Helianthus annuus HOM05D003821 ORTHO05D004449 1.9e-08 62.4 43 74.4
Oeu027727.1 Olea europaea HOM05D003821 ORTHO05D004449 1.9e-08 62.4 41 73.2
Gohir.A08G117600 Gossypium hirsutum HOM05D003821 ORTHO05D004449 5.7e-08 60.8 41 73.2
Gorai.N022500 Gossypium raimondii HOM05D003821 ORTHO05D004449 1.3e-07 59.7 48 66.7
Prupe.1G136900 Prunus persica HOM05D003821 ORTHO05D004449 1.7e-07 59.3 31 93.5
PGR031G0623 Punica granatum HOM05D003821 ORTHO05D004449 1.7e-07 59.3 35 85.7
TAR365G0642 Trochodendron aralioides HOM05D003821 ORTHO05D004449 1.7e-07 59.3 32 90.6
THA.LOC104802574 Tarenaya hassleriana HOM05D003821 ORTHO05D004449 2.2e-07 58.9 31 93.5
Lj5g0023739 Lotus japonicus HOM05D003821 ORTHO05D004449 4.8e-07 57.8 31 93.5
Ciclev10023083m.g Citrus clementina HOM05D003821 ORTHO05D004449 6.3e-07 57.4 31 90.3
Os06g0274000 Oryza sativa ssp. japonica HOM05D003821 ORTHO05D004449 6.3e-07 57.4 38 73.7
TWI79G0264 Tripterygium wilfordii HOM05D003821 ORTHO05D004449 6.3e-07 57.4 37 78.4
Manes.01G217100 Manihot esculenta HOM05D003821 ORTHO05D004449 8.2e-07 57.0 30 93.3
Psat6g166600 Pisum sativum HOM05D003821 ORTHO05D004449 1.1e-06 56.6 36 80.6
BcaC06g32965 Brassica carinata HOM05D003821 ORTHO05D004449 1.4e-06 56.2 38 73.7
BcaNung00244 Brassica carinata HOM05D000802 ORTHO05D013138 1.4e-06 56.2 38 73.7
Gohir.A12G010600 Gossypium hirsutum HOM05D003821 ORTHO05D004449 1.8e-06 55.8 31 90.3
Gohir.D12G011000 Gossypium hirsutum HOM05D003821 ORTHO05D004449 1.8e-06 55.8 31 90.3
Manes.03G194900 Manihot esculenta HOM05D003821 ORTHO05D004449 1.8e-06 55.8 31 87.1
Peaxi162Scf00086g00435 Petunia axillaris HOM05D003821 ORTHO05D004449 2.4e-06 55.5 34 79.4
THA.LOC104821775 Tarenaya hassleriana HOM05D003821 ORTHO05D004449 2.4e-06 55.5 32 87.5
Migut.N00088 Erythranthe guttata HOM05D003821 ORTHO05D004449 3.1e-06 55.1 32 84.4
Potri.008G208100 Populus trichocarpa HOM05D003821 ORTHO05D004449 4.1e-06 54.7 31 87.1
Potri.010G025000 Populus trichocarpa HOM05D003821 ORTHO05D004449 4.1e-06 54.7 31 87.1
Duzib138G0767 Durio zibethinus HOM05D003821 ORTHO05D004449 5.3e-06 54.3 32 84.4
Prupe.8G258100 Prunus persica HOM05D003821 ORTHO05D004449 5.3e-06 54.3 31 87.1
PGR004G1635 Punica granatum HOM05D003821 ORTHO05D004449 5.3e-06 54.3 31 90.3
Gorai.008G011000 Gossypium raimondii HOM05D003821 ORTHO05D004449 6.9e-06 53.9 30 90.0
SHI29056 Sapria himalayana HOM05D000030 ORTHO05D000009 9.1e-06 53.5 38 73.7


User provided reference genes

Program Settings