Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01017685001 Vitis vinifera HOM05D004696 ORTHO05D005645 8.1e-106 387.1 199 100.0
Dinv18020 Davidia involucrata HOM05D004696 ORTHO05D005645 1.1e-81 307.0 199 79.4
TAR629G2307 Trochodendron aralioides HOM05D004696 ORTHO05D005645 9.0e-81 303.9 199 78.4
Dinv29511 Davidia involucrata HOM05D004696 ORTHO05D005645 2.0e-80 302.8 199 76.9
Actinidia22921 Actinidia chinensis HOM05D004696 ORTHO05D005645 8.4e-79 297.4 198 74.7
CSS0007787 Camellia sinensis var. sinensis HOM05D004696 ORTHO05D005645 6.0e-77 291.2 201 73.6
TWI73G0566 Tripterygium wilfordii HOM05D004696 ORTHO05D005645 3.9e-76 288.5 199 75.4
Manes.11G020900 Manihot esculenta HOM05D004696 ORTHO05D005645 5.7e-75 284.6 199 73.4
vmacro08011 Vaccinium macrocarpon HOM05D004696 ORTHO05D005645 7.4e-75 284.3 211 70.1
Cfa015727 Carpinus fangiana HOM05D004696 ORTHO05D005645 1.6e-74 283.1 200 74.5
Ciclev10005920m.g Citrus clementina HOM05D004696 ORTHO05D005645 3.7e-74 282.0 201 70.1
CiPaw.02G069300 Carya illinoinensis HOM05D004696 ORTHO05D005645 1.8e-73 279.6 200 73.5
Lsat_1_v5_gn_1_39920 Lactuca sativa HOM05D004696 ORTHO05D005645 3.1e-73 278.9 200 70.5
Atru.chr4.3144 Acer truncatum HOM05D004696 ORTHO05D005645 5.3e-73 278.1 196 73.0
PGR031G3538 Punica granatum HOM05D004696 ORTHO05D005645 5.3e-73 278.1 200 72.0
Haze_00771 Corylus avellana HOM05D004696 ORTHO05D005645 6.9e-73 277.7 200 73.0
Manes.03G211700 Manihot esculenta HOM05D004696 ORTHO05D005645 6.9e-73 277.7 199 71.9
TWI09G0971 Tripterygium wilfordii HOM05D004696 ORTHO05D005645 6.9e-73 277.7 199 71.9
QL06p014174 Quercus lobata HOM05D004696 ORTHO05D005645 2.6e-72 275.8 209 70.3
Aqoxy4G02417 Aquilegia oxysepala HOM05D004696 ORTHO05D005645 7.6e-72 274.2 199 71.4
Thecc.04G312600 Theobroma cacao HOM05D004696 ORTHO05D005645 1.0e-71 273.9 202 71.3
Eucgr.B03956 Eucalyptus grandis HOM05D004696 ORTHO05D005645 1.7e-71 273.1 199 69.8
Cpa.g.sc146.25 Carica papaya HOM05D004696 ORTHO05D005645 2.2e-71 272.7 201 71.6
HanXRQChr09g0238571 Helianthus annuus HOM05D004696 ORTHO05D005645 3.8e-71 271.9 200 69.0
Gohir.A02G058200 Gossypium hirsutum HOM05D004696 ORTHO05D005645 6.5e-71 271.2 204 69.1
Solyc05g053220.3 Solanum lycopersicum HOM05D004696 ORTHO05D005645 6.5e-71 271.2 199 71.4
Sopen05g031730 Solanum pennellii HOM05D004696 ORTHO05D005645 6.5e-71 271.2 199 71.4
Lsat_1_v5_gn_6_92581 Lactuca sativa HOM05D004696 ORTHO05D005645 8.5e-71 270.8 199 68.8
PGSC0003DMG400027150 Solanum tuberosum HOM05D004696 ORTHO05D005645 1.9e-70 269.6 199 70.9
CsaV3_6G008150 Cucumis sativus L. HOM05D004696 ORTHO05D005645 2.5e-70 269.2 200 71.0
Gorai.005G071900 Gossypium raimondii HOM05D004696 ORTHO05D005645 2.5e-70 269.2 204 69.1
CAN.G305.38 Capsicum annuum HOM05D004696 ORTHO05D005645 1.2e-69 266.9 199 69.8
Duzib151G0078 Durio zibethinus HOM05D004696 ORTHO05D005645 1.2e-69 266.9 200 68.5
Lalb_Chr10g0096421 Lupinus albus HOM05D004696 ORTHO05D005645 4.6e-69 265.0 197 68.0
Gohir.D02G064000 Gossypium hirsutum HOM05D004696 ORTHO05D005645 7.9e-69 264.2 204 68.1
VMungo0331G1167 Vigna mungo HOM05D004696 ORTHO05D005645 1.0e-68 263.8 197 68.0
Ah.06g192450 Amaranthus hybridus HOM05D004696 ORTHO05D005645 2.3e-68 262.7 200 67.0
Phvul.010G140500 Phaseolus vulgaris HOM05D004696 ORTHO05D005645 3.0e-68 262.3 197 66.5
Potri.010G002100 Populus trichocarpa HOM05D004696 ORTHO05D005645 3.0e-68 262.3 193 69.4
Migut.N00002 Erythranthe guttata HOM05D004696 ORTHO05D005645 3.9e-68 261.9 198 69.2
Phvul.003G045400 Phaseolus vulgaris HOM05D004696 ORTHO05D005645 3.9e-68 261.9 197 68.0
arahy.Tifrunner.gnm1.ann1.61U0KE Arachis hypogaea HOM05D004696 ORTHO05D005645 6.7e-68 261.2 206 65.0
Sed0019137 Sechium edule HOM05D004696 ORTHO05D005645 1.1e-67 260.4 198 68.7
Ah.16g105210 Amaranthus hybridus HOM05D004696 ORTHO05D005645 1.9e-67 259.6 200 66.0
Lj2g0021207 Lotus japonicus HOM05D004696 ORTHO05D005645 1.9e-67 259.6 198 66.7
Aqoxy5G04183 Aquilegia oxysepala HOM05D004696 ORTHO05D005645 2.5e-67 259.2 199 68.3
Potri.008G206400 Populus trichocarpa HOM05D004696 ORTHO05D005645 2.5e-67 259.2 193 70.5
Sabra02G0114900 Salix brachista HOM05D004696 ORTHO05D005645 4.3e-67 258.5 193 71.0
Glyma.01G218300 Glycine max HOM05D004696 ORTHO05D005645 9.7e-67 257.3 197 67.5
Sc17g0002920 Simmondsia chinensis HOM05D004696 ORTHO05D005645 9.7e-67 257.3 200 67.5
EL10Ac4g08571 Beta vulgaris HOM05D004696 ORTHO05D005645 1.3e-66 256.9 192 69.3
arahy.Tifrunner.gnm1.ann1.BY2PXQ Arachis hypogaea HOM05D004696 ORTHO05D005645 2.2e-66 256.1 206 64.1
Lalb_Chr17g0338851 Lupinus albus HOM05D004696 ORTHO05D005645 2.2e-66 256.1 197 64.5
arahy.Tifrunner.gnm1.ann1.NQRV37 Arachis hypogaea HOM05D004696 ORTHO05D005645 2.8e-66 255.8 206 64.1
MD13G1140700 Malus domestica HOM05D004696 ORTHO05D005645 4.8e-66 255.0 199 66.3
Glyma.11G024900 Glycine max HOM05D004696 ORTHO05D005645 6.3e-66 254.6 197 67.5
Prupe.1G105700 Prunus persica HOM05D004696 ORTHO05D005645 1.1e-65 253.8 199 65.8
MSTRG.24614 Avicennia marina HOM05D004696 ORTHO05D005645 1.8e-65 253.1 189 71.4
MBI03_g01483_MAGBIO Magnolia biondii HOM05D004696 ORTHO05D005645 2.4e-65 252.7 186 68.8
RcHm_v2.0_Chr4g0427441 Rosa chinensis HOM05D004696 ORTHO05D005645 2.4e-65 252.7 201 65.7
Lj4g0004970 Lotus japonicus HOM05D004696 ORTHO05D005645 4.1e-65 251.9 198 65.2
SalBow2G0725 Salvia bowleyana HOM05D001196 ORTHO05D005911 4.1e-65 251.9 186 72.0
FAN07G1680 Fragaria x ananassa HOM05D004696 ORTHO05D005645 1.2e-64 250.4 199 66.3
SGA_v2.0_scaffold49G18399 Striga asiatica HOM05D004696 ORTHO05D005645 1.2e-64 250.4 196 67.3
Glyma.14G125600 Glycine max HOM05D004696 ORTHO05D005645 1.5e-64 250.0 193 66.3
MD07G1065600 Malus domestica HOM05D004696 ORTHO05D005645 1.5e-64 250.0 199 65.8
CANSAT78G0332 Cannabis sativa HOM05D004696 ORTHO05D005645 5.9e-64 248.1 202 65.8
Medtr5g081850 Medicago truncatula HOM05D004696 ORTHO05D005645 5.9e-64 248.1 199 62.8
FvH4_4g21490 Fragaria vesca HOM05D004696 ORTHO05D005645 1.3e-63 246.9 199 65.8
Sabra08G0150400 Salix brachista HOM05D004696 ORTHO05D005645 1.3e-63 246.9 213 64.3
FAN12G0616 Fragaria x ananassa HOM05D004696 ORTHO05D005645 3.8e-63 245.4 199 64.8
AUR62020507 Chenopodium quinoa HOM05D004696 ORTHO05D005645 5.0e-63 245.0 191 65.4
Cc03_g00150 Coffea canephora HOM05D004696 ORTHO05D005645 6.5e-63 244.6 217 59.9
Psat7g133720 Pisum sativum HOM05D004696 ORTHO05D005645 6.5e-63 244.6 198 63.1
Cc00_g15640 Coffea canephora HOM05D004696 ORTHO05D005645 8.5e-63 244.2 217 61.3
MD16G1136700 Malus domestica HOM05D004696 ORTHO05D005645 8.5e-63 244.2 199 65.3
Psat1g042400 Pisum sativum HOM05D004696 ORTHO05D005645 4.2e-62 241.9 198 62.6
CDE06G2579 Ceratophyllum demersum HOM05D005139 ORTHO05D006125 5.5e-62 241.5 195 65.6
Sabra02G0116500 Salix brachista HOM05D004696 ORTHO05D005645 7.2e-62 241.1 213 63.8
THA.LOC104827108 Tarenaya hassleriana HOM05D004696 ORTHO05D005645 6.1e-61 238.0 196 62.8
ECA220G0002 Erigeron canadensis HOM05D004696 ORTHO05D005645 6.7e-60 234.6 185 63.2
Aqoxy3G02973 Aquilegia oxysepala HOM05D004696 ORTHO05D005645 8.8e-60 234.2 155 76.1
unitig_8.g2889 Utricularia gibba HOM05D004696 ORTHO05D005645 2.2e-58 229.6 187 64.2
AL6G41010 Arabidopsis lyrata HOM05D004696 ORTHO05D005645 4.8e-58 228.4 199 61.3
TPR.G8061 Trifolium pratense HOM05D004696 ORTHO05D005645 1.1e-57 227.3 200 59.5
AT5G30495 Arabidopsis thaliana HOM05D004696 ORTHO05D005645 3.1e-57 225.7 199 60.3
PSO782G4648 Papaver somniferum HOM05D004696 ORTHO05D005645 5.3e-57 224.9 190 59.5
PSO478G3068 Papaver somniferum HOM05D004696 ORTHO05D005645 9.1e-57 224.2 192 58.3
Os02g0730500 Oryza sativa ssp. japonica HOM05D004696 ORTHO05D005645 1.5e-56 223.4 194 61.9
PSO063G5897 Papaver somniferum HOM05D004696 ORTHO05D005645 1.5e-56 223.4 197 57.9
Lj6C700T16 Lonicera japonica HOM05D004696 ORTHO05D005645 3.4e-56 222.2 199 61.8
Oeu022705.1 Olea europaea HOM05D004696 ORTHO05D005645 3.4e-56 222.2 178 65.2
PSO832G1751 Papaver somniferum HOM05D004696 ORTHO05D005645 4.5e-56 221.9 200 57.0
Rhsim04G0248200 Rhododendron simsii HOM05D004696 ORTHO05D005645 5.9e-56 221.5 201 60.7
BcaC04g23715 Brassica carinata HOM05D004696 ORTHO05D005645 7.7e-56 221.1 199 60.8
AUR62015697 Chenopodium quinoa HOM05D004696 ORTHO05D005645 7.7e-56 221.1 152 69.7
Hma1.2p1_2234F.1_g317690 Hydrangea macrophylla HOM05D004696 ORTHO05D000003 1.0e-55 220.7 260 52.3
Nitab4.5_0008086g0030 Nicotiana tabacum HOM05D004696 ORTHO05D005645 1.7e-55 219.9 199 62.3
Sp2g19960 Schrenkiella parvula HOM05D004696 ORTHO05D005645 6.5e-55 218.0 199 57.3
C09p05450 Brassica napus HOM05D004696 ORTHO05D005645 8.5e-55 217.6 199 60.8
A09p05040 Brassica napus HOM05D004696 ORTHO05D005645 1.4e-54 216.9 199 60.8
BraA09t36143Z Brassica rapa HOM05D004696 ORTHO05D005645 1.4e-54 216.9 199 60.8
BolC9t53474H Brassica oleracea HOM05D004696 ORTHO05D005645 2.5e-54 216.1 199 60.3
Zm00001eb189970 Zea mays HOM05D004696 ORTHO05D005645 4.2e-54 215.3 199 59.3
Oeu037627.2 Olea europaea HOM05D004696 ORTHO05D005645 5.5e-54 214.9 302 46.0
BcaB04g19639 Brassica carinata HOM05D004696 ORTHO05D005645 9.4e-54 214.2 199 58.3
Carub.0002s0865 Capsella rubella HOM05D004696 ORTHO05D005645 1.2e-53 213.8 199 59.3
CARHR185500 Cardamine hirsuta HOM05D004696 ORTHO05D005645 7.9e-53 211.1 199 57.8
Peaxi162Scf00164g00414 Petunia axillaris HOM05D004696 ORTHO05D005645 2.3e-52 209.5 199 58.8
Aa31LG2G12130 Aethionema arabicum HOM05D004696 ORTHO05D005645 3.9e-52 208.8 196 56.1
AT1G54770 Arabidopsis thaliana HOM05D004696 ORTHO05D005645 8.8e-52 207.6 200 61.0
ClCG06G002080 Citrullus lanatus HOM05D004696 ORTHO05D005645 1.1e-51 207.2 200 58.5
Thhalv10005420m.g Eutrema salsugineum HOM05D004696 ORTHO05D005645 3.3e-51 205.7 201 57.7
Actinidia01063 Actinidia chinensis HOM05D004696 ORTHO05D005645 7.4e-51 204.5 197 56.3
arahy.Tifrunner.gnm1.ann1.09FGJA Arachis hypogaea HOM05D004696 ORTHO05D005645 7.4e-51 204.5 197 55.3
SGA_v2.0_scaffold69G23291 Striga asiatica HOM05D004696 ORTHO05D005645 1.8e-49 199.9 198 56.1
Nitab4.5_0000745g0120 Nicotiana tabacum HOM05D004696 ORTHO05D005645 5.5e-46 188.3 199 55.3
SHI04008 Sapria himalayana HOM05D004696 ORTHO05D005645 4.7e-45 185.3 162 61.1
SEGI_16783 Sequoiadendron giganteum HOM05D004696 ORTHO05D005645 8.0e-45 184.5 171 56.7
SEGI_41631 Sequoiadendron giganteum HOM05D004696 ORTHO05D005645 1.0e-44 184.1 183 54.1
Ca_05928_v3 Cicer arietinum L. HOM05D004696 ORTHO05D005645 8.8e-44 181.0 198 49.0
ECA248G3148 Erigeron canadensis HOM05D004696 ORTHO05D005645 8.8e-44 181.0 191 52.4
Nn3g16891 Nelumbo nucifera HOM05D004696 ORTHO05D005645 1.5e-43 180.3 126 69.0
Ca_06214_v3 Cicer arietinum L. HOM05D004696 ORTHO05D005645 3.3e-43 179.1 199 48.2
Mapoly0084s0020 Marchantia polymorpha HOM05D004696 ORTHO05D005645 8.2e-42 174.5 180 50.6
Pp3c7_450 Physcomitrium patens HOM05D004696 ORTHO05D005645 2.0e-40 169.9 181 50.8
MELO3C035238.2 Cucumis melo HOM05D004696 ORTHO05D005645 5.0e-39 165.2 168 55.4
SMO139G0013 Selaginella moellendorffii HOM05D004696 ORTHO05D005645 7.2e-38 161.4 185 48.1
ATR1127G170 Amborella trichopoda HOM05D004696 ORTHO05D005645 7.7e-32 141.4 128 57.8
Lj4g0014561 Lotus japonicus HOM05D004696 ORTHO05D005645 1.3e-31 140.6 100 72.0
CBR_g41139 Chara braunii HOM05D004696 ORTHO05D005645 2.9e-31 139.4 150 46.0
ECA149G0001 Erigeron canadensis HOM05D004696 ORTHO05D005645 8.5e-31 137.9 191 46.6
Lj4g0016234 Lotus japonicus HOM05D004696 ORTHO05D005645 1.5e-30 137.1 97 72.2
HPP92_006011 Vanilla planifolia HOM05D004696 ORTHO05D005645 4.7e-29 132.1 124 51.6
RcHm_v2.0_Chr4g0427481 Rosa chinensis HOM05D004696 ORTHO05D005645 1.0e-28 131.0 103 61.2
TAR371G0358 Trochodendron aralioides HOM05D004696 ORTHO05D005645 3.4e-27 125.9 104 68.3
CSS0046364 Camellia sinensis var. sinensis HOM05D004696 ORTHO05D005645 3.7e-26 122.5 102 60.8
CSS0022818 Camellia sinensis var. sinensis HOM05D004696 ORTHO05D005645 1.4e-25 120.6 101 59.4
Lj2g0010517 Lotus japonicus HOM05D004696 ORTHO05D005645 1.8e-25 120.2 132 53.8
MCO05G434 Micromonas commoda HOM05D004696 ORTHO05D005645 4.5e-24 115.5 179 38.0
AagrBONN_evm.TU.Sc2ySwM_368.1627 Anthoceros agrestis HOM05D004696 ORTHO05D005645 5.9e-24 115.2 159 42.8
BcaC04g19932 Brassica carinata HOM05D004696 ORTHO05D005645 1.5e-22 110.5 121 51.2
BolC9t57816H Brassica oleracea HOM05D004696 ORTHO05D005645 1.9e-22 110.2 121 52.1
Zm00001eb253530 Zea mays HOM05D004696 ORTHO05D005645 5.6e-22 108.6 99 58.6
COL.COLO4_34519 Corchorus olitorius HOM05D004696 ORTHO05D005645 2.8e-21 106.3 117 51.3
Lj2g0009432 Lotus japonicus HOM05D004696 ORTHO05D005645 3.4e-19 99.4 97 57.7
PRCOL_00000839 Prasinoderma coloniale HOM05D004696 ORTHO05D005645 3.7e-18 95.9 90 53.3
Cfa024688 Carpinus fangiana HOM05D004696 ORTHO05D005645 4.6e-16 89.0 101 42.6
BcaB05g22696 Brassica carinata HOM05D004696 ORTHO05D005645 8.6e-15 84.7 127 40.9
EL10Ac1g01076 Beta vulgaris HOM05D004696 ORTHO05D005645 1.4e-12 77.4 57 73.7
Cre03.g194150 Chlamydomonas reinhardtii HOM05D004696 ORTHO05D005645 1.4e-12 77.4 175 33.7
Aqoxy5G04095 Aquilegia oxysepala HOM05D004696 ORTHO05D005645 1.5e-11 73.9 69 59.4
QL04p080373 Quercus lobata HOM05D000023 ORTHO05D000014 3.4e-11 72.8 45 77.8
Zm00001eb026470 Zea mays HOM05D004696 ORTHO05D021106 5.8e-11 72.0 65 56.9
QL12p004065 Quercus lobata HOM05D004696 ORTHO05D005645 6.4e-10 68.6 66 60.6
CSS0030909 Camellia sinensis var. sinensis HOM05D004696 ORTHO05D005645 1.9e-09 67.0 102 42.2
Zm00001eb219180 Zea mays HOM05D004696 ORTHO05D005645 9.2e-09 64.7 65 53.8
Medtr7g074130 Medicago truncatula HOM05D004696 ORTHO05D005645 3.0e-07 59.7 62 54.8


User provided reference genes

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