Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01017585001 Vitis vinifera HOM05D004770 ORTHO05D005572 1.3e-35 152.5 77 100.0
GSVIVG01020385001 Vitis vinifera HOM05D004770 ORTHO05D005572 5.1e-16 87.4 49 89.8
Cc01_g06090 Coffea canephora HOM05D004770 ORTHO05D005572 1.2e-09 66.2 63 60.3
PGR031G3940 Punica granatum HOM05D004770 ORTHO05D005572 1.2e-09 66.2 63 61.9
QL01p011010 Quercus lobata HOM05D004770 ORTHO05D005572 3.6e-09 64.7 63 58.7
Aa31LG10G17080 Aethionema arabicum HOM05D004770 ORTHO05D005572 4.6e-09 64.3 74 51.4
Ciclev10022091m.g Citrus clementina HOM05D004770 ORTHO05D005572 4.6e-09 64.3 63 60.3
Thecc.01G273700 Theobroma cacao HOM05D004770 ORTHO05D005572 4.6e-09 64.3 63 58.7
arahy.Tifrunner.gnm1.ann1.RIN6C8 Arachis hypogaea HOM05D004770 ORTHO05D005572 6.1e-09 63.9 63 58.7
arahy.Tifrunner.gnm1.ann1.S84LE1 Arachis hypogaea HOM05D004770 ORTHO05D005572 6.1e-09 63.9 63 58.7
arahy.Tifrunner.gnm1.ann1.W9SXTW Arachis hypogaea HOM05D004770 ORTHO05D005572 6.1e-09 63.9 63 58.7
arahy.Tifrunner.gnm1.ann1.YE39MU Arachis hypogaea HOM05D004770 ORTHO05D005572 6.1e-09 63.9 63 58.7
TAR362G0723 Trochodendron aralioides HOM05D004770 ORTHO05D005572 6.1e-09 63.9 63 58.7
Migut.D00330 Erythranthe guttata HOM05D004770 ORTHO05D005572 7.9e-09 63.5 63 58.7
Manes.01G205200 Manihot esculenta HOM05D004770 ORTHO05D005572 7.9e-09 63.5 63 58.7
Potri.002G049900 Populus trichocarpa HOM05D004770 ORTHO05D005572 7.9e-09 63.5 63 58.7
QL01p010878 Quercus lobata HOM05D004770 ORTHO05D005572 7.9e-09 63.5 63 58.7
Sabra02G0040800 Salix brachista HOM05D004770 ORTHO05D005572 7.9e-09 63.5 63 58.7
Atru.chr5.1488 Acer truncatum HOM05D004770 ORTHO05D005572 1.0e-08 63.2 63 57.1
Cfa006174 Carpinus fangiana HOM05D004770 ORTHO05D005572 1.0e-08 63.2 63 57.1
Haze_04673 Corylus avellana HOM05D004770 ORTHO05D005572 1.0e-08 63.2 63 57.1
Lj1A49T61 Lonicera japonica HOM05D004770 ORTHO05D005572 1.0e-08 63.2 63 57.1
Lj3A581T22 Lonicera japonica HOM05D004770 ORTHO05D005572 1.0e-08 63.2 63 57.1
Sed0021970 Sechium edule HOM05D004770 ORTHO05D005572 1.0e-08 63.2 63 57.1
Oeu025750.1 Olea europaea HOM05D004770 ORTHO05D005572 1.4e-08 62.8 63 58.7
Solyc06g084160.4 Solanum lycopersicum HOM05D004770 ORTHO05D005572 1.4e-08 62.8 63 57.1
PGSC0003DMG400020135 Solanum tuberosum HOM05D004770 ORTHO05D005572 1.4e-08 62.8 63 57.1
SGA_v2.0_scaffold1G00513 Striga asiatica HOM05D004770 ORTHO05D005572 1.4e-08 62.8 63 57.1
SGA_v2.0_scaffold80G25747 Striga asiatica HOM05D004770 ORTHO05D005572 1.4e-08 62.8 63 57.1
unitig_0.g135 Utricularia gibba HOM05D004770 ORTHO05D005572 1.4e-08 62.8 63 57.1
A06p36610 Brassica napus HOM05D004770 ORTHO05D005572 1.8e-08 62.4 63 57.1
BraA06t26586Z Brassica rapa HOM05D004770 ORTHO05D005572 1.8e-08 62.4 63 57.1
ClCG03G016560 Citrullus lanatus HOM05D004770 ORTHO05D005572 1.8e-08 62.4 63 57.1
MELO3C015367.2 Cucumis melo HOM05D004770 ORTHO05D005572 1.8e-08 62.4 63 57.1
Duzib138G1187 Durio zibethinus HOM05D004770 ORTHO05D005572 1.8e-08 62.4 63 55.6
Thhalv10004885m.g Eutrema salsugineum HOM05D004770 ORTHO05D005572 1.8e-08 62.4 63 57.1
Hma1.2p1_2357F.1_g320590 Hydrangea macrophylla HOM05D004770 ORTHO05D005572 1.8e-08 62.4 63 58.7
Nn6g34126 Nelumbo nucifera HOM05D004770 ORTHO05D005572 1.8e-08 62.4 63 58.7
Nitab4.5_0004355g0020 Nicotiana tabacum HOM05D004770 ORTHO05D005572 1.8e-08 62.4 63 57.1
Peaxi162Scf00783g00122 Petunia axillaris HOM05D004770 ORTHO05D005572 1.8e-08 62.4 63 57.1
SalBow4G2779 Salvia bowleyana HOM05D004770 ORTHO05D005572 1.8e-08 62.4 63 57.1
Sp5g00290 Schrenkiella parvula HOM05D004770 ORTHO05D005572 1.8e-08 62.4 63 57.1
BcaNung02803 Brassica carinata HOM05D004770 ORTHO05D005572 2.3e-08 62.0 63 57.1
BcaNung03978 Brassica carinata HOM05D004770 ORTHO05D005572 2.3e-08 62.0 63 57.1
C07p41870 Brassica napus HOM05D004770 ORTHO05D005572 2.3e-08 62.0 63 57.1
CARHR187390 Cardamine hirsuta HOM05D004770 ORTHO05D005572 2.3e-08 62.0 63 57.1
CsaV3_1G039420 Cucumis sativus L. HOM05D004770 ORTHO05D005572 2.3e-08 62.0 63 55.6
Eucgr.G02085 Eucalyptus grandis HOM05D004770 ORTHO05D005572 2.3e-08 62.0 63 57.1
HanXRQChr08g0213371 Helianthus annuus HOM05D004770 ORTHO05D005572 2.3e-08 62.0 63 57.1
Potri.005G212800 Populus trichocarpa HOM05D004770 ORTHO05D005572 2.3e-08 62.0 63 57.1
Sp2g21620 Schrenkiella parvula HOM05D004770 ORTHO05D005572 2.3e-08 62.0 63 57.1
THA.LOC104817561 Tarenaya hassleriana HOM05D004770 ORTHO05D005572 2.3e-08 62.0 63 55.6
HPP92_017651 Vanilla planifolia HOM05D004770 ORTHO05D005572 2.3e-08 62.0 63 55.6
CAN.G1549.26 Capsicum annuum HOM05D004770 ORTHO05D005572 3.0e-08 61.6 63 55.6
Cpa.g.sc41.63 Carica papaya HOM05D004770 ORTHO05D005572 3.0e-08 61.6 74 50.0
CiPaw.07G089000 Carya illinoinensis HOM05D004770 ORTHO05D005572 3.0e-08 61.6 63 57.1
Lj6g0011383 Lotus japonicus HOM05D004770 ORTHO05D005572 3.0e-08 61.6 63 54.0
Sabra05G0162600 Salix brachista HOM05D004770 ORTHO05D005572 3.0e-08 61.6 63 57.1
vmacro14906 Vaccinium macrocarpon HOM05D004770 ORTHO05D005572 3.0e-08 61.6 63 57.1
Actinidia00788 Actinidia chinensis HOM05D004770 ORTHO05D005572 3.9e-08 61.2 63 57.1
Carub.0005s0602 Capsella rubella HOM05D004770 ORTHO05D005572 3.9e-08 61.2 63 55.6
Carub.0006s2388 Capsella rubella HOM05D004770 ORTHO05D005572 3.9e-08 61.2 63 55.6
CSS0005681 Camellia sinensis var. sinensis HOM05D004770 ORTHO05D005572 5.1e-08 60.8 63 57.1
CSS0032403 Camellia sinensis var. sinensis HOM05D004770 ORTHO05D005572 5.1e-08 60.8 63 57.1
CAN.G1549.14 Capsicum annuum HOM05D004770 ORTHO05D005572 5.1e-08 60.8 63 54.0
Gohir.D12G003300 Gossypium hirsutum HOM05D004770 ORTHO05D005572 5.1e-08 60.8 63 54.0
Gorai.008G003100 Gossypium raimondii HOM05D004770 ORTHO05D005572 5.1e-08 60.8 63 54.0
Lalb_Chr18g0051481 Lupinus albus HOM05D004770 ORTHO05D005572 5.1e-08 60.8 63 55.6
MBI02_g08255_MAGBIO Magnolia biondii HOM05D004770 ORTHO05D005572 5.1e-08 60.8 63 55.6
MBI15_g39353_MAGBIO Magnolia biondii HOM05D004770 ORTHO05D005572 5.1e-08 60.8 63 55.6
Nn1g02388 Nelumbo nucifera HOM05D004770 ORTHO05D005572 5.1e-08 60.8 63 57.1
Nitab4.5_0000759g0280 Nicotiana tabacum HOM05D004770 ORTHO05D005572 5.1e-08 60.8 63 55.6
Prupe.8G236800 Prunus persica HOM05D004770 ORTHO05D005572 5.1e-08 60.8 63 57.1
QL12p020786 Quercus lobata HOM05D004770 ORTHO05D005572 5.1e-08 60.8 63 57.1
Rhsim13G0027500 Rhododendron simsii HOM05D004770 ORTHO05D005572 5.1e-08 60.8 63 57.1
Actinidia24914 Actinidia chinensis HOM05D004770 ORTHO05D005572 6.7e-08 60.5 63 55.6
CANSAT80G2828 Cannabis sativa HOM05D004770 ORTHO05D005572 6.7e-08 60.5 63 55.6
Glyma.17G044400 Glycine max HOM05D004770 ORTHO05D005572 6.7e-08 60.5 63 55.6
Glyma.18G056100 Glycine max HOM05D004770 ORTHO05D005572 6.7e-08 60.5 63 55.6
Lj3g0010058 Lotus japonicus HOM05D004770 ORTHO05D005572 6.7e-08 60.5 63 54.0
Phvul.006G075100 Phaseolus vulgaris HOM05D004770 ORTHO05D005572 6.7e-08 60.5 63 55.6
Solyc08g005140.3 Solanum lycopersicum HOM05D004770 ORTHO05D005572 6.7e-08 60.5 63 55.6
VMungo0540G0250 Vigna mungo HOM05D004770 ORTHO05D005572 6.7e-08 60.5 63 55.6
GSVIVG01001190001 Vitis vinifera HOM05D004770 ORTHO05D005572 6.7e-08 60.5 63 58.7
Phvul.007G249400 Phaseolus vulgaris HOM05D004770 ORTHO05D005572 8.8e-08 60.1 63 54.0
Sopen06g035540 Solanum pennellii HOM05D004770 ORTHO05D005572 8.8e-08 60.1 63 54.0
PGSC0003DMG400017838 Solanum tuberosum HOM05D004770 ORTHO05D005572 8.8e-08 60.1 59 57.6
TWI39G0629 Tripterygium wilfordii HOM05D004770 ORTHO05D005572 8.8e-08 60.1 63 55.6
VMungo0720G0347 Vigna mungo HOM05D004770 ORTHO05D005572 8.8e-08 60.1 63 52.4
Aqoxy2G03435 Aquilegia oxysepala HOM05D004770 ORTHO05D005572 1.1e-07 59.7 63 55.6
AL2G11930 Arabidopsis lyrata HOM05D004770 ORTHO05D005572 1.1e-07 59.7 63 55.6
AL2G11990 Arabidopsis lyrata HOM05D004770 ORTHO05D005572 1.1e-07 59.7 63 55.6
AT5G26110 Arabidopsis thaliana HOM05D004770 ORTHO05D005572 1.1e-07 59.7 63 55.6
AUR62012543 Chenopodium quinoa HOM05D004770 ORTHO05D005572 1.1e-07 59.7 63 55.6
Ca_15021_v3 Cicer arietinum L. HOM05D004770 ORTHO05D005572 1.1e-07 59.7 63 54.0
ECA248G2232 Erigeron canadensis HOM05D004770 ORTHO05D005572 1.1e-07 59.7 63 55.6
MD11G1280900 Malus domestica HOM05D004770 ORTHO05D005572 1.1e-07 59.7 63 55.6
Sopen08g001150 Solanum pennellii HOM05D004770 ORTHO05D005572 1.1e-07 59.7 63 55.6
AUR62032312 Chenopodium quinoa HOM05D004770 ORTHO05D005572 1.5e-07 59.3 63 55.6
COL.COLO4_09057 Corchorus olitorius HOM05D001769 ORTHO05D001695 1.5e-07 59.3 63 54.0
DCAR_002713 Daucus carota HOM05D004770 ORTHO05D005572 1.5e-07 59.3 63 55.6
Dinv34783 Davidia involucrata HOM05D004770 ORTHO05D005572 1.5e-07 59.3 63 57.1
PSO832G1010 Papaver somniferum HOM05D004770 ORTHO05D005572 1.5e-07 59.3 63 55.6
SEGI_22603 Sequoiadendron giganteum HOM05D004770 ORTHO05D005572 1.5e-07 59.3 63 54.0
EL10Ac5g10525 Beta vulgaris HOM05D004770 ORTHO05D005572 2.0e-07 58.9 63 54.0
Lj2g0018175 Lotus japonicus HOM05D004770 ORTHO05D005572 2.0e-07 58.9 63 52.4
SEGI_19127 Sequoiadendron giganteum HOM05D004770 ORTHO05D005572 2.0e-07 58.9 63 52.4
FAN20G2343 Fragaria x ananassa HOM05D004770 ORTHO05D005572 2.6e-07 58.5 63 54.0
FAN27G1754 Fragaria x ananassa HOM05D004770 ORTHO05D005572 2.6e-07 58.5 63 54.0
FvH4_2g23150 Fragaria vesca HOM05D004770 ORTHO05D005572 3.3e-07 58.2 63 54.0
Medtr3g465790 Medicago truncatula HOM05D004770 ORTHO05D005572 3.3e-07 58.2 63 52.4
Nitab4.5_0000208g0100 Nicotiana tabacum HOM05D004770 ORTHO05D005572 3.3e-07 58.2 63 54.0
PSO170G2661 Papaver somniferum HOM05D004770 ORTHO05D005572 3.3e-07 58.2 63 52.4
PSO210G1988 Papaver somniferum HOM05D004770 ORTHO05D005572 3.3e-07 58.2 63 52.4
Migut.N02033 Erythranthe guttata HOM05D004770 ORTHO05D005572 4.4e-07 57.8 63 54.0
Gohir.A12G003600 Gossypium hirsutum HOM05D004770 ORTHO05D005572 4.4e-07 57.8 63 52.4
Lsat_1_v5_gn_5_186200 Lactuca sativa HOM05D004770 ORTHO05D005572 4.4e-07 57.8 63 55.6
TPR.G25688 Trifolium pratense HOM05D004770 ORTHO05D005572 4.4e-07 57.8 63 52.4
ATR0665G226 Amborella trichopoda HOM05D004770 ORTHO05D005572 7.4e-07 57.0 63 52.4
DCAR_012498 Daucus carota HOM05D004770 ORTHO05D005572 7.4e-07 57.0 63 54.0
Nitab4.5_0006132g0020 Nicotiana tabacum HOM05D004770 ORTHO05D005572 7.4e-07 57.0 63 54.0
SalBow7G1168 Salvia bowleyana HOM05D004770 ORTHO05D005572 7.4e-07 57.0 63 52.4
Hund02843 Selenicereus undatus HOM05D004770 ORTHO05D005572 9.7e-07 56.6 63 50.8
Zm00001eb222890 Zea mays HOM05D004770 ORTHO05D005572 9.7e-07 56.6 63 50.8
Psat6g025640 Pisum sativum HOM05D004770 ORTHO05D005572 1.3e-06 56.2 63 49.2
RcHm_v2.0_Chr6g0290401 Rosa chinensis HOM05D004770 ORTHO05D005572 2.2e-06 55.5 63 52.4
vmacro02598 Vaccinium macrocarpon HOM05D004770 ORTHO05D005572 2.2e-06 55.5 64 56.2
Mapoly0133s0052 Marchantia polymorpha HOM05D004770 ORTHO05D005572 2.8e-06 55.1 59 52.5
SMO358G0317 Selaginella moellendorffii HOM05D004770 ORTHO05D005572 3.7e-06 54.7 70 47.1
Zm00001eb031460 Zea mays HOM05D004770 ORTHO05D005572 4.8e-06 54.3 63 47.6


User provided reference genes

Program Settings