Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01017278001 Vitis vinifera HOM05D004554 ORTHO05D005360 5.3e-66 254.2 130 100.0
CSS0017610 Camellia sinensis var. sinensis HOM05D004554 ORTHO05D005360 4.4e-36 154.8 106 78.3
Atru.chr2.1839 Acer truncatum HOM05D004554 ORTHO05D005360 3.7e-35 151.8 81 93.8
SalBow3G2596 Salvia bowleyana HOM05D004554 ORTHO05D005360 1.1e-34 150.2 113 71.7
vmacro16909 Vaccinium macrocarpon HOM05D004554 ORTHO05D005360 1.1e-34 150.2 82 91.5
CSS0011930 Camellia sinensis var. sinensis HOM05D004554 ORTHO05D005360 1.9e-34 149.4 82 90.2
Rhsim08G0215600 Rhododendron simsii HOM05D004554 ORTHO05D005360 1.9e-34 149.4 79 93.7
COL.COLO4_28385 Corchorus olitorius HOM05D004554 ORTHO05D005360 4.1e-34 148.3 79 92.4
QL06p045297 Quercus lobata HOM05D004554 ORTHO05D005360 4.1e-34 148.3 85 89.4
Dinv30578 Davidia involucrata HOM05D004554 ORTHO05D005360 5.4e-34 147.9 82 89.0
HanXRQChr16g0500531 Helianthus annuus HOM05D004554 ORTHO05D005360 5.4e-34 147.9 81 91.4
QL10p039943 Quercus lobata HOM05D004554 ORTHO05D005360 5.4e-34 147.9 79 92.4
Sopen06g025310 Solanum pennellii HOM05D004554 ORTHO05D005360 5.4e-34 147.9 82 89.0
CAN.G395.49 Capsicum annuum HOM05D004554 ORTHO05D005360 7.0e-34 147.5 133 64.7
HanXRQChr09g0274941 Helianthus annuus HOM05D004554 ORTHO05D005360 7.0e-34 147.5 81 90.1
MD08G1243100 Malus domestica HOM05D004554 ORTHO05D005360 7.0e-34 147.5 81 90.1
CSS0043216 Camellia sinensis var. sinensis HOM05D004554 ORTHO05D005360 9.2e-34 147.1 82 87.8
SalBow2G1085 Salvia bowleyana HOM05D004554 ORTHO05D005360 9.2e-34 147.1 82 89.0
Hund00544 Selenicereus undatus HOM05D004554 ORTHO05D005360 9.2e-34 147.1 82 86.6
PGSC0003DMG401028512 Solanum tuberosum HOM05D004554 ORTHO05D005360 9.2e-34 147.1 82 89.0
BcaC04g21821 Brassica carinata HOM05D004554 ORTHO05D005360 1.2e-33 146.7 82 87.8
BolC9t55589H Brassica oleracea HOM05D004554 ORTHO05D005360 1.2e-33 146.7 82 87.8
CANSAT56G2605 Cannabis sativa HOM05D004554 ORTHO05D005360 1.6e-33 146.4 82 87.8
Duzib268G0645 Durio zibethinus HOM05D004554 ORTHO05D005360 1.6e-33 146.4 82 89.0
Rhsim12G0192700 Rhododendron simsii HOM05D004554 ORTHO05D005360 1.6e-33 146.4 79 91.1
TWI31G0401 Tripterygium wilfordii HOM05D004554 ORTHO05D005360 1.6e-33 146.4 82 87.8
Actinidia08808 Actinidia chinensis HOM05D004554 ORTHO05D005360 2.1e-33 146.0 82 87.8
Aa31sc43G10 Aethionema arabicum HOM05D004554 ORTHO05D005360 2.1e-33 146.0 79 91.1
BolC6t40416H Brassica oleracea HOM05D004554 ORTHO05D005360 2.1e-33 146.0 97 78.4
Hund06576 Selenicereus undatus HOM05D004554 ORTHO05D005360 2.1e-33 146.0 80 90.0
ClCG02G000050 Citrullus lanatus HOM05D004554 ORTHO05D005360 2.7e-33 145.6 79 89.9
CsaV3_2G019710 Cucumis sativus L. HOM05D004554 ORTHO05D005360 2.7e-33 145.6 79 89.9
MD15G1436700 Malus domestica HOM05D004554 ORTHO05D005360 2.7e-33 145.6 79 91.1
Sc10g0005760 Simmondsia chinensis HOM05D004554 ORTHO05D005360 2.7e-33 145.6 82 87.8
PGSC0003DMG402028512 Solanum tuberosum HOM05D004554 ORTHO05D005360 2.7e-33 145.6 82 87.8
Ah.11g047570 Amaranthus hybridus HOM05D004554 ORTHO05D005360 3.5e-33 145.2 79 91.1
A07p45180 Brassica napus HOM05D004554 ORTHO05D005360 3.5e-33 145.2 79 91.1
BraA07t32021Z Brassica rapa HOM05D004554 ORTHO05D005360 3.5e-33 145.2 79 91.1
CiPaw.03G115100 Carya illinoinensis HOM05D004554 ORTHO05D005360 3.5e-33 145.2 82 87.8
Thecc.04G171500 Theobroma cacao HOM05D004554 ORTHO05D005360 3.5e-33 145.2 82 87.8
C06p54030 Brassica napus HOM05D004554 ORTHO05D005360 4.6e-33 144.8 84 86.9
CARHR074020 Cardamine hirsuta HOM05D004554 ORTHO05D005360 6.0e-33 144.4 82 86.6
Cc02_g38630 Coffea canephora HOM05D004554 ORTHO05D005360 6.0e-33 144.4 85 83.5
FvH4_7g07440 Fragaria vesca HOM05D004554 ORTHO05D005360 6.0e-33 144.4 112 70.5
FAN06G4122 Fragaria x ananassa HOM05D004554 ORTHO05D005360 6.0e-33 144.4 112 70.5
FAN10G0691 Fragaria x ananassa HOM05D004554 ORTHO05D005360 6.0e-33 144.4 112 70.5
Gohir.D02G111000 Gossypium hirsutum HOM05D004554 ORTHO05D005360 6.0e-33 144.4 82 86.6
Gorai.005G125900 Gossypium raimondii HOM05D004554 ORTHO05D005360 6.0e-33 144.4 82 86.6
PSO170G6065 Papaver somniferum HOM05D004554 ORTHO05D005360 6.0e-33 144.4 82 84.1
Potri.001G043400 Populus trichocarpa HOM05D004554 ORTHO05D005360 6.0e-33 144.4 82 86.6
AL2G40970 Arabidopsis lyrata HOM05D004554 ORTHO05D005360 7.8e-33 144.1 82 86.6
AL6G52910 Arabidopsis lyrata HOM05D004554 ORTHO05D005360 7.8e-33 144.1 82 86.6
AT1G80500 Arabidopsis thaliana HOM05D004554 ORTHO05D005360 7.8e-33 144.1 82 86.6
Carub.0002s1001 Capsella rubella HOM05D004554 ORTHO05D005360 7.8e-33 144.1 82 86.6
Lalb_Chr08g0237951 Lupinus albus HOM05D004554 ORTHO05D005360 7.8e-33 144.1 80 88.8
Manes.04G101300 Manihot esculenta HOM05D004554 ORTHO05D005360 7.8e-33 144.1 82 86.6
Manes.11G068800 Manihot esculenta HOM05D004554 ORTHO05D005360 7.8e-33 144.1 82 86.6
Potri.003G183400 Populus trichocarpa HOM05D004554 ORTHO05D005360 7.8e-33 144.1 82 85.4
Sp5g35300 Schrenkiella parvula HOM05D004554 ORTHO05D005360 7.8e-33 144.1 82 86.6
arahy.Tifrunner.gnm1.ann1.HM0BYB Arachis hypogaea HOM05D004554 ORTHO05D005360 1.0e-32 143.7 79 88.6
arahy.Tifrunner.gnm1.ann1.NV3HYF Arachis hypogaea HOM05D004554 ORTHO05D005360 1.0e-32 143.7 79 88.6
arahy.Tifrunner.gnm1.ann1.YS1HQ5 Arachis hypogaea HOM05D004554 ORTHO05D005360 1.0e-32 143.7 79 88.6
Ciclev10022803m.g Citrus clementina HOM05D004554 ORTHO05D005360 1.0e-32 143.7 82 86.6
MELO3C023193.2 Cucumis melo HOM05D004554 ORTHO05D005360 1.0e-32 143.7 82 85.4
Duzib151G1169 Durio zibethinus HOM05D004554 ORTHO05D005360 1.0e-32 143.7 82 86.6
Oeu053426.1 Olea europaea HOM05D004554 ORTHO05D005360 1.0e-32 143.7 81 88.9
Sabra01G0029900 Salix brachista HOM05D004554 ORTHO05D005360 1.0e-32 143.7 79 89.9
MSTRG.4713 Avicennia marina HOM05D004554 ORTHO05D005360 1.3e-32 143.3 82 85.4
Migut.D01058 Erythranthe guttata HOM05D004554 ORTHO05D005360 1.3e-32 143.3 82 85.4
THA.LOC104819505 Tarenaya hassleriana HOM05D004554 ORTHO05D005360 1.3e-32 143.3 82 86.6
TWI75G0475 Tripterygium wilfordii HOM05D004554 ORTHO05D005360 1.3e-32 143.3 136 60.3
Oeu052276.1 Olea europaea HOM05D004554 ORTHO05D005360 1.7e-32 142.9 82 87.8
arahy.Tifrunner.gnm1.ann1.Z4TQX9 Arachis hypogaea HOM05D004554 ORTHO05D005360 2.3e-32 142.5 79 87.3
CiPaw.04G077100 Carya illinoinensis HOM05D004554 ORTHO05D005360 2.3e-32 142.5 82 85.4
Eucgr.E03470 Eucalyptus grandis HOM05D004554 ORTHO05D005360 2.3e-32 142.5 82 86.6
Sc25g0002650 Simmondsia chinensis HOM05D004554 ORTHO05D005360 2.3e-32 142.5 82 86.6
vmacro21051 Vaccinium macrocarpon HOM05D004554 ORTHO05D005360 2.3e-32 142.5 79 89.9
ATR0138G017 Amborella trichopoda HOM05D004554 ORTHO05D005360 3.0e-32 142.1 78 89.7
Gohir.A02G092800 Gossypium hirsutum HOM05D004554 ORTHO05D005360 3.0e-32 142.1 82 85.4
Hma1.2p1_0515F.1_g170190 Hydrangea macrophylla HOM05D004554 ORTHO05D005360 3.0e-32 142.1 82 85.4
ECA232G3015 Erigeron canadensis HOM05D004554 ORTHO05D005360 3.9e-32 141.7 82 82.9
Sp2g09550 Schrenkiella parvula HOM05D004554 ORTHO05D005360 3.9e-32 141.7 82 85.4
Sed0018246 Sechium edule HOM05D004554 ORTHO05D005360 5.1e-32 141.4 82 82.9
Duzib212G0633 Durio zibethinus HOM05D004554 ORTHO05D005360 6.6e-32 141.0 82 84.1
PGR119G2244 Punica granatum HOM05D004554 ORTHO05D005360 6.6e-32 141.0 82 85.4
Nitab4.5_0005235g0030 Nicotiana tabacum HOM05D004554 ORTHO05D005360 8.6e-32 140.6 78 89.7
Psat5g058840 Pisum sativum HOM05D004554 ORTHO05D005360 8.6e-32 140.6 82 84.1
Solyc06g068030.3 Solanum lycopersicum HOM05D004554 ORTHO05D005360 8.6e-32 140.6 78 89.7
TPR.G7873 Trifolium pratense HOM05D004554 ORTHO05D005360 8.6e-32 140.6 82 84.1
A09p21270 Brassica napus HOM05D003109 ORTHO05D003578 1.1e-31 140.2 85 83.5
BraA09t37732Z Brassica rapa HOM05D004554 ORTHO05D005360 1.1e-31 140.2 85 83.5
FAN03G1590 Fragaria x ananassa HOM05D004554 ORTHO05D005360 1.1e-31 140.2 81 85.2
Glyma.04G207300 Glycine max HOM05D004554 ORTHO05D005360 1.1e-31 140.2 82 82.9
Phvul.009G152000 Phaseolus vulgaris HOM05D004554 ORTHO05D005360 1.1e-31 140.2 82 82.9
EL10Ac6g14261 Beta vulgaris HOM05D004554 ORTHO05D005360 1.9e-31 139.4 75 92.0
CSS0029734 Camellia sinensis var. sinensis HOM05D004554 ORTHO05D005360 1.9e-31 139.4 80 86.2
CDE01G0639 Ceratophyllum demersum HOM05D004554 ORTHO05D005360 1.9e-31 139.4 82 82.9
Nitab4.5_0000620g0010 Nicotiana tabacum HOM05D004554 ORTHO05D005360 1.9e-31 139.4 78 88.5
Lj1g0025297 Lotus japonicus HOM05D004554 ORTHO05D005360 2.5e-31 139.0 82 82.9
Prupe.1G580600 Prunus persica HOM05D004554 ORTHO05D005360 3.3e-31 138.7 75 90.7
THA.LOC104807163 Tarenaya hassleriana HOM05D004554 ORTHO05D005360 4.3e-31 138.3 82 84.1
Zm00001eb111730 Zea mays HOM05D004554 ORTHO05D005360 4.3e-31 138.3 82 81.7
Glyma.06G158300 Glycine max HOM05D004554 ORTHO05D005360 7.3e-31 137.5 82 80.5
Lsat_1_v5_gn_4_105840 Lactuca sativa HOM05D004554 ORTHO05D005360 9.5e-31 137.1 75 89.3
RcHm_v2.0_Chr1g0339521 Rosa chinensis HOM05D004554 ORTHO05D005360 9.5e-31 137.1 75 89.3
PSO541G2287 Papaver somniferum HOM05D004554 ORTHO05D005360 1.2e-30 136.7 82 81.7
PSO675G8776 Papaver somniferum HOM05D004554 ORTHO05D005360 1.2e-30 136.7 82 81.7
SEGI_00661 Sequoiadendron giganteum HOM05D004554 ORTHO05D005360 2.8e-30 135.6 82 78.0
FAN01G0304 Fragaria x ananassa HOM05D004554 ORTHO05D007400 4.7e-30 134.8 75 88.0
Gohir.A09G212650 Gossypium hirsutum HOM05D004554 ORTHO05D005360 4.7e-30 134.8 82 82.9
Os02g0613600 Oryza sativa ssp. japonica HOM05D004554 ORTHO05D005360 4.7e-30 134.8 82 79.3
BcaB07g30930 Brassica carinata HOM05D004554 ORTHO05D005360 1.4e-29 133.3 80 81.2
DCAR_025490 Daucus carota HOM05D004554 ORTHO05D005360 5.2e-29 131.3 76 81.6
Zm00001eb331160 Zea mays HOM05D004554 ORTHO05D005360 6.8e-29 131.0 83 80.7
SGA_v2.0_scaffold16G07612 Striga asiatica HOM05D004554 ORTHO05D005360 8.9e-29 130.6 114 60.5
unitig_899.g14783 Utricularia gibba HOM05D004554 ORTHO05D005360 5.8e-28 127.9 76 81.6
Medtr1g102650 Medicago truncatula HOM05D004554 ORTHO05D005360 1.3e-27 126.7 71 87.3
SGA_v2.0_scaffold117G32370 Striga asiatica HOM05D004554 ORTHO05D005360 2.2e-27 125.9 70 85.7
VMungo1309G1053 Vigna mungo HOM05D004554 ORTHO05D005360 3.7e-27 125.2 71 84.5
Lj1g0023737 Lotus japonicus HOM05D004554 ORTHO05D005360 4.9e-27 124.8 86 74.4
Pp3c14_6180 Physcomitrium patens HOM05D004554 ORTHO05D005360 8.3e-27 124.0 82 69.5
Mapoly0010s0129 Marchantia polymorpha HOM05D004554 ORTHO05D005360 1.1e-26 123.6 82 68.3
Gohir.D09G206200 Gossypium hirsutum HOM05D004554 ORTHO05D005360 1.4e-26 123.2 82 75.6
Gorai.006G230100 Gossypium raimondii HOM05D004554 ORTHO05D005360 1.4e-26 123.2 82 75.6
Hma1.2p1_1324F.1_g275710 Hydrangea macrophylla HOM05D004554 ORTHO05D005360 1.4e-26 123.2 67 91.0
AagrBONN_evm.TU.Sc2ySwM_362.569 Anthoceros agrestis HOM05D004554 ORTHO05D005360 4.1e-26 121.7 82 67.1
Thhalv10019800m.g Eutrema salsugineum HOM05D004554 ORTHO05D005360 1.5e-23 113.2 105 61.0
Lsat_1_v5_gn_5_132260 Lactuca sativa HOM05D004554 ORTHO05D005360 2.8e-22 109.0 71 78.9
Ca_17005_v3 Cicer arietinum L. HOM05D004554 ORTHO05D005360 8.9e-21 104.0 57 89.5
SMO244G0023 Selaginella moellendorffii HOM05D004554 ORTHO05D005360 8.9e-21 104.0 121 47.1
Peaxi162Scf00207g00743 Petunia axillaris HOM05D004554 ORTHO05D005360 1.2e-20 103.6 56 89.3
Medtr3g097015 Medicago truncatula HOM05D004554 ORTHO05D005360 1.5e-20 103.2 56 91.1
TAR626G1579 Trochodendron aralioides HOM05D004554 ORTHO05D005360 3.4e-20 102.1 52 94.2
C09p27060 Brassica napus HOM05D004554 ORTHO05D005360 5.8e-20 101.3 56 87.5
CBR_g36380 Chara braunii HOM05D004554 ORTHO05D005360 5.8e-20 101.3 75 61.3
Os04g0503800 Oryza sativa ssp. japonica HOM05D004554 ORTHO05D005360 1.6e-17 93.2 56 78.6
MCO03G231 Micromonas commoda HOM05D004554 ORTHO05D005360 4.3e-15 85.1 90 46.7
arahy.Tifrunner.gnm1.ann1.MTW2QA Arachis hypogaea HOM05D004554 ORTHO05D005360 3.6e-14 82.0 59 69.5
PRCOL_00001690 Prasinoderma coloniale HOM05D004554 ORTHO05D005360 9.0e-13 77.4 74 47.3
Lj5A69T38 Lonicera japonica HOM05D004554 ORTHO05D005360 1.7e-11 73.2 81 55.6
Sed0002995 Sechium edule HOM05D004554 ORTHO05D005360 2.9e-11 72.4 42 76.2
Cre13.g571600 Chlamydomonas reinhardtii HOM05D004554 ORTHO05D005360 3.5e-09 65.5 80 41.2
QL11p051435 Quercus lobata HOM05D004554 ORTHO05D005360 1.3e-06 57.0 29 89.7


User provided reference genes

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