Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01017208001 Vitis vinifera HOM05D004705 ORTHO05D005595 0.0e+00 1286.9 658 100.0
Dinv38075 Davidia involucrata HOM05D004705 ORTHO05D005595 2.4e-255 885.6 797 63.1
Prupe.3G077300 Prunus persica HOM05D004705 ORTHO05D005595 9.4e-252 873.6 736 65.5
Potri.003G058600 Populus trichocarpa HOM05D004705 ORTHO05D005595 1.8e-250 869.4 744 65.2
RcHm_v2.0_Chr2g0137071 Rosa chinensis HOM05D004705 ORTHO05D005595 9.1e-247 857.1 736 63.7
Manes.04G119400 Manihot esculenta HOM05D004705 ORTHO05D005595 3.2e-244 848.6 746 64.2
MD17G1201400 Malus domestica HOM05D004705 ORTHO05D005595 9.4e-244 847.0 752 62.8
Haze_16487 Corylus avellana HOM05D004705 ORTHO05D005595 1.6e-243 846.3 739 63.1
QL05p026953 Quercus lobata HOM05D004705 ORTHO05D005595 1.0e-242 843.6 740 63.2
Thecc.06G077700 Theobroma cacao HOM05D004705 ORTHO05D005595 4.0e-242 841.6 739 63.3
Duzib235G0494 Durio zibethinus HOM05D004705 ORTHO05D005595 8.8e-242 840.5 720 65.3
FvH4_6g30700 Fragaria vesca HOM05D004705 ORTHO05D005595 8.8e-242 840.5 736 63.5
Potri.001G175500 Populus trichocarpa HOM05D004705 ORTHO05D005595 4.4e-241 838.2 707 65.8
Cfa002032 Carpinus fangiana HOM05D004705 ORTHO05D005595 7.5e-241 837.4 737 63.2
Atru.chr1.3167 Acer truncatum HOM05D004705 ORTHO05D005595 2.2e-240 835.9 736 63.0
Ciclev10024977m.g Citrus clementina HOM05D004705 ORTHO05D005595 3.7e-240 835.1 751 62.5
FAN09G0848 Fragaria x ananassa HOM05D004705 ORTHO05D005595 1.8e-239 832.8 738 62.6
FAN05G0816 Fragaria x ananassa HOM05D004705 ORTHO05D005595 4.5e-238 828.2 736 62.2
FAN02G3197 Fragaria x ananassa HOM05D004705 ORTHO05D005595 2.9e-237 825.5 736 62.4
FAN14G4493 Fragaria x ananassa HOM05D004705 ORTHO05D005595 1.2e-235 820.1 705 64.1
vmacro16932 Vaccinium macrocarpon HOM05D004705 ORTHO05D005595 2.8e-235 818.9 804 58.8
Gohir.A02G124100 Gossypium hirsutum HOM05D004705 ORTHO05D005595 1.0e-234 817.0 707 64.1
TAR626G1984 Trochodendron aralioides HOM05D004705 ORTHO05D005595 2.3e-234 815.8 750 62.1
CSS0020826 Camellia sinensis var. sinensis HOM05D004705 ORTHO05D005595 7.5e-233 810.8 776 60.3
Duzib160G0698 Durio zibethinus HOM05D004705 ORTHO05D005595 1.3e-232 810.1 703 63.6
CSS0001459 Camellia sinensis var. sinensis HOM05D004705 ORTHO05D005595 1.7e-232 809.7 776 60.3
Dinv30551 Davidia involucrata HOM05D004705 ORTHO05D005595 8.3e-232 807.4 750 62.0
CiPaw.01G242500 Carya illinoinensis HOM05D004705 ORTHO05D005595 7.0e-231 804.3 739 61.8
ClCG07G012910 Citrullus lanatus HOM05D004705 ORTHO05D005595 2.7e-230 802.4 730 60.3
Gohir.D03G064900 Gossypium hirsutum HOM05D004705 ORTHO05D005595 2.3e-229 799.3 744 60.9
MELO3C012944.2 Cucumis melo HOM05D004705 ORTHO05D005595 5.0e-229 798.1 732 59.7
Gorai.002G057500 Gossypium raimondii HOM05D004705 ORTHO05D005595 5.0e-229 798.1 744 60.9
CsaV3_3G026670 Cucumis sativus L. HOM05D004705 ORTHO05D005595 1.6e-227 793.1 722 60.4
TWI75G0140 Tripterygium wilfordii HOM05D004705 ORTHO05D005595 1.9e-223 779.6 749 59.1
Sed0012410 Sechium edule HOM05D004705 ORTHO05D005595 2.4e-223 779.2 721 59.4
Lj5A66T57 Lonicera japonica HOM05D004705 ORTHO05D005595 9.2e-223 777.3 806 56.8
Glyma.15G011700 Glycine max HOM05D004705 ORTHO05D005595 1.1e-220 770.4 772 57.5
Nn8g39334 Nelumbo nucifera HOM05D004705 ORTHO05D005595 2.1e-219 766.1 748 58.7
RhsimUnG0009400 Rhododendron simsii HOM05D004705 ORTHO05D005595 4.7e-219 765.0 851 54.9
PGR031G3493 Punica granatum HOM05D004705 ORTHO05D005595 8.1e-219 764.2 734 59.3
Manes.11G049500 Manihot esculenta HOM05D004705 ORTHO05D005595 2.3e-218 762.7 560 71.8
TAR383G1056 Trochodendron aralioides HOM05D004705 ORTHO05D005595 5.2e-218 761.5 756 57.9
Peaxi162Scf00015g00532 Petunia axillaris HOM05D004705 ORTHO05D005595 8.9e-218 760.8 839 53.3
Rhsim12G0195000 Rhododendron simsii HOM05D004705 ORTHO05D005595 7.5e-217 757.7 850 54.4
CANSAT56G4120 Cannabis sativa HOM05D004705 ORTHO05D005595 1.3e-216 756.9 746 59.0
Cc04_g03760 Coffea canephora HOM05D004705 ORTHO05D005595 1.7e-216 756.5 813 55.5
PGSC0003DMG400005697 Solanum tuberosum HOM05D004705 ORTHO05D005595 3.5e-214 748.8 818 54.4
Nitab4.5_0004817g0040 Nicotiana tabacum HOM05D004705 ORTHO05D005595 6.6e-213 744.6 815 54.0
Phvul.005G173800 Phaseolus vulgaris HOM05D004705 ORTHO05D005595 4.3e-212 741.9 751 56.2
Sopen03g038820 Solanum pennellii HOM05D004705 ORTHO05D005595 4.3e-212 741.9 817 53.7
Aqoxy7G01953 Aquilegia oxysepala HOM05D004705 ORTHO05D005595 9.5e-212 740.7 776 56.1
DCAR_025463 Daucus carota HOM05D004705 ORTHO05D005595 4.7e-211 738.4 826 54.0
Lj3g0018532 Lotus japonicus HOM05D004705 ORTHO05D005595 6.2e-211 738.0 738 57.9
Solyc03g119940.3 Solanum lycopersicum HOM05D004705 ORTHO05D005595 8.1e-211 737.6 817 53.5
CAN.G438.96 Capsicum annuum HOM05D004705 ORTHO05D005595 1.4e-210 736.9 809 54.6
Hund00574 Selenicereus undatus HOM05D004705 ORTHO05D005595 5.2e-210 734.9 718 59.1
Sp3g13840 Schrenkiella parvula HOM05D004705 ORTHO05D005595 6.8e-210 734.6 731 57.2
Oeu051920.1 Olea europaea HOM05D004705 ORTHO05D005595 1.2e-209 733.8 822 53.2
HanXRQChr02g0032571 Helianthus annuus HOM05D004705 ORTHO05D005595 2.0e-209 733.0 754 56.5
Glyma.13G362100 Glycine max HOM05D004705 ORTHO05D005595 1.1e-207 727.2 757 56.1
EL10Ac9g21966 Beta vulgaris HOM05D004705 ORTHO05D005595 2.4e-207 726.1 757 55.6
arahy.Tifrunner.gnm1.ann1.1G4SNU Arachis hypogaea HOM05D004705 ORTHO05D005595 4.1e-207 725.3 686 58.9
THA.LOC104818041 Tarenaya hassleriana HOM05D004705 ORTHO05D005595 9.2e-207 724.2 728 56.9
Ca_01096_v3 Cicer arietinum L. HOM05D004705 ORTHO05D005595 1.2e-206 723.8 693 59.3
ECA247G3649 Erigeron canadensis HOM05D004705 ORTHO05D005595 6.0e-206 721.5 792 54.0
Lsat_1_v5_gn_1_33801 Lactuca sativa HOM05D004705 ORTHO05D005595 1.6e-203 713.4 765 55.3
PSO017G1026 Papaver somniferum HOM05D004705 ORTHO05D005595 1.6e-203 713.4 727 56.3
PSO170G5959 Papaver somniferum HOM05D004705 ORTHO05D005595 1.6e-203 713.4 727 56.1
arahy.Tifrunner.gnm1.ann1.WXP04W Arachis hypogaea HOM05D004705 ORTHO05D005595 1.4e-202 710.3 687 57.9
Lalb_Chr24g0395661 Lupinus albus HOM05D004705 ORTHO05D005595 2.4e-202 709.5 558 68.1
SalBow5G4930 Salvia bowleyana HOM05D004705 ORTHO05D005595 1.5e-201 706.8 570 66.5
Carub.0003s1530 Capsella rubella HOM05D004705 ORTHO05D005595 1.3e-200 703.7 726 55.0
AL3G28180 Arabidopsis lyrata HOM05D004705 ORTHO05D005595 1.7e-200 703.4 745 54.6
Psat5g299960 Pisum sativum HOM05D004705 ORTHO05D005595 2.9e-200 702.6 631 62.1
Sabra01G0137000 Salix brachista HOM05D004705 ORTHO05D005595 4.9e-200 701.8 688 58.4
Aa31LG8G2800 Aethionema arabicum HOM05D004705 ORTHO05D005595 1.9e-199 699.9 710 57.0
AUR62016408 Chenopodium quinoa HOM05D004705 ORTHO05D005595 1.9e-199 699.9 745 54.4
Medtr2g102680 Medicago truncatula HOM05D004705 ORTHO05D005595 5.4e-199 698.4 659 60.1
AT3G15550 Arabidopsis thaliana HOM05D004705 ORTHO05D005595 7.1e-199 698.0 751 53.7
Eucgr.J03029 Eucalyptus grandis HOM05D004705 ORTHO05D005595 7.8e-198 694.5 721 55.6
SGA_v2.0_scaffold153G36966 Striga asiatica HOM05D004705 ORTHO05D005595 1.0e-197 694.1 769 53.7
A05p33830 Brassica napus HOM05D004705 ORTHO05D005595 5.6e-196 688.3 724 55.4
MSTRG.20727 Avicennia marina HOM05D004705 ORTHO05D005595 3.6e-195 685.6 826 50.6
CARHR090640 Cardamine hirsuta HOM05D004705 ORTHO05D005595 4.8e-195 685.3 703 56.0
BraA01t03898Z Brassica rapa HOM05D004705 ORTHO05D005595 1.4e-194 683.7 706 57.1
Lalb_Chr22g0351091 Lupinus albus HOM05D004705 ORTHO05D005595 1.2e-193 680.6 687 58.4
VMungo1080G1183 Vigna mungo HOM05D004705 ORTHO05D005595 1.2e-193 680.6 745 54.8
A01p38480 Brassica napus HOM05D004705 ORTHO05D005595 2.6e-193 679.5 706 56.7
TPR.G37249 Trifolium pratense HOM05D004705 ORTHO05D005595 2.6e-193 679.5 589 63.0
BcaB06g29595 Brassica carinata HOM05D004705 ORTHO05D005595 3.4e-193 679.1 714 55.6
Cpa.g.c32383.1 Carica papaya HOM05D004705 ORTHO05D005595 4.4e-193 678.7 691 57.6
Thhalv10020202m.g Eutrema salsugineum HOM05D004705 ORTHO05D005595 3.8e-192 675.6 719 54.7
AUR62011594 Chenopodium quinoa HOM05D004705 ORTHO05D005595 6.4e-192 674.9 561 64.3
BcaC09g48528 Brassica carinata HOM05D004705 ORTHO05D005595 8.4e-192 674.5 707 56.2
C01p48810 Brassica napus HOM05D004705 ORTHO05D005595 8.4e-192 674.5 698 56.7
BolC1t04836H Brassica oleracea HOM05D004705 ORTHO05D005595 5.4e-191 671.8 701 56.5
MBI04_g43364_MAGBIO Magnolia biondii HOM05D004705 ORTHO05D005595 2.1e-190 669.8 846 49.5
Sc12g0008970 Simmondsia chinensis HOM05D004705 ORTHO05D005595 3.0e-189 666.0 754 53.2
Oeu000022.1 Olea europaea HOM05D004705 ORTHO05D005595 5.1e-189 665.2 809 50.6
MSTRG.17159 Avicennia marina HOM05D004705 ORTHO05D005595 7.3e-188 661.4 817 49.9
COL.COLO4_12857 Corchorus olitorius HOM05D004705 ORTHO05D005595 9.6e-188 661.0 557 65.0
BraA05t22205Z Brassica rapa HOM05D004705 ORTHO05D005595 1.6e-187 660.2 717 54.4
C05p51460 Brassica napus HOM05D004705 ORTHO05D005595 2.8e-187 659.4 700 55.1
BcaC05g28954 Brassica carinata HOM05D004705 ORTHO05D005595 3.4e-185 652.5 701 54.8
BcaB04g20914 Brassica carinata HOM05D004705 ORTHO05D005595 9.3e-183 644.4 699 55.1
Nitab4.5_0000410g0340 Nicotiana tabacum HOM05D004705 ORTHO05D005595 2.8e-179 632.9 434 72.6
BolC5t33833H Brassica oleracea HOM05D004705 ORTHO05D005595 3.7e-179 632.5 709 53.0
unitig_26.g8885 Utricularia gibba HOM05D004705 ORTHO05D005595 7.9e-174 614.8 615 55.3
arahy.Tifrunner.gnm1.ann1.HFN88V Arachis hypogaea HOM05D004705 ORTHO05D005595 1.0e-173 614.4 705 53.3
Nn2g11880 Nelumbo nucifera HOM05D004705 ORTHO05D005595 6.7e-173 611.7 543 61.9
Lalb_Chr25g0279551 Lupinus albus HOM05D004705 ORTHO05D005595 6.3e-171 605.1 671 52.9
Zm00001eb122560 Zea mays HOM05D004705 ORTHO05D005595 3.0e-165 586.3 559 57.8
Os01g0176500 Oryza sativa ssp. japonica HOM05D004705 ORTHO05D005595 6.7e-165 585.1 528 59.8
arahy.Tifrunner.gnm1.ann1.AD4PBH Arachis hypogaea HOM05D004705 ORTHO05D005595 3.3e-156 556.2 705 50.2
ATR0083G057 Amborella trichopoda HOM05D004705 ORTHO05D005595 2.8e-155 553.1 836 43.9
CDE01G0719 Ceratophyllum demersum HOM05D004705 ORTHO05D005595 1.2e-150 537.7 568 52.8
Migut.B01589 Erythranthe guttata HOM05D004705 ORTHO05D005595 1.8e-149 533.9 664 50.6
THA.LOC104812485 Tarenaya hassleriana HOM05D004705 ORTHO05D005595 1.4e-146 524.2 441 60.3
unitig_61.g26415 Utricularia gibba HOM05D004705 ORTHO05D005595 2.5e-143 513.5 516 57.2
Ah.01g021140 Amaranthus hybridus HOM05D004705 ORTHO05D005595 4.5e-137 492.7 737 44.5
SEGI_27484 Sequoiadendron giganteum HOM05D004705 ORTHO05D005595 8.6e-120 435.3 637 43.0
SEGI_13982 Sequoiadendron giganteum HOM05D004705 ORTHO05D005595 7.5e-108 395.6 581 41.7
MBI01_g15493_MAGBIO Magnolia biondii HOM05D004705 ORTHO05D005595 1.4e-106 391.3 641 41.5
Actinidia16007 Actinidia chinensis HOM05D004705 ORTHO05D005595 5.4e-98 362.8 299 62.2
AagrBONN_evm.TU.Sc2ySwM_228.3613 Anthoceros agrestis HOM05D004705 ORTHO05D005595 6.2e-94 349.4 473 44.6
Pp3c8_15560 Physcomitrium patens HOM05D004705 ORTHO05D005595 1.5e-92 344.7 484 42.8
Pp3c23_2990 Physcomitrium patens HOM05D004705 ORTHO05D005595 1.9e-90 337.8 484 42.1
Pp3c13_19170 Physcomitrium patens HOM05D004705 ORTHO05D005595 9.2e-90 335.5 485 42.1
CDE02G1329 Ceratophyllum demersum HOM05D004705 ORTHO05D005595 3.6e-86 323.6 506 41.9
Pp3c23_18290 Physcomitrium patens HOM05D004705 ORTHO05D005595 1.4e-82 311.6 436 40.8
Pp3c20_1400 Physcomitrium patens HOM05D004705 ORTHO05D005595 7.1e-82 309.3 484 39.0
Pp3c20_1403 Physcomitrium patens HOM05D004705 ORTHO05D005595 7.1e-82 309.3 484 39.0
Pp3c24_17130 Physcomitrium patens HOM05D004705 ORTHO05D005595 7.1e-82 309.3 472 41.9
Pp3c8_22450 Physcomitrium patens HOM05D004705 ORTHO05D005595 1.5e-79 301.6 483 39.1
MBI04_g47892_MAGBIO Magnolia biondii HOM05D004705 ORTHO05D005595 6.0e-73 279.6 520 42.7
Lj8C335T16 Lonicera japonica HOM05D004705 ORTHO05D005595 1.9e-71 274.6 384 47.7
SHI09686 Sapria himalayana HOM05D004705 ORTHO05D005595 1.4e-66 258.5 564 39.5
SMO147G0411 Selaginella moellendorffii HOM05D004705 ORTHO05D005595 1.3e-56 225.3 196 54.1
Actinidia08822 Actinidia chinensis HOM05D004705 ORTHO05D005595 9.3e-50 202.6 201 61.2
BcaC09g48527 Brassica carinata HOM05D004705 ORTHO05D005595 3.7e-30 137.5 92 66.3
GSVIVG01017207001 Vitis vinifera HOM05D029100 ORTHO05D016439 9.4e-26 122.9 105 61.9
Actinidia16006 Actinidia chinensis HOM05D004705 ORTHO05D005595 2.2e-22 111.7 400 32.8
Medtr1g107505 Medicago truncatula HOM05D004705 ORTHO05D005595 2.2e-19 101.7 71 69.0
MBI04_g47893_MAGBIO Magnolia biondii HOM05D004705 ORTHO05D005595 2.5e-18 98.2 209 35.4
Actinidia08821 Actinidia chinensis HOM05D004705 ORTHO05D005595 1.2e-17 95.9 279 33.3
Nitab4.5_0000410g0350 Nicotiana tabacum HOM05D004705 ORTHO05D005595 5.4e-13 80.5 103 56.3
FAN21G1601 Fragaria x ananassa HOM05D000031 ORTHO05D000030 4.5e-12 77.4 63 54.0
FAN08G3635 Fragaria x ananassa HOM05D004705 ORTHO05D000113 1.7e-11 75.5 74 51.4
FAN15G3749 Fragaria x ananassa HOM05D005026 ORTHO05D005981 1.7e-11 75.5 74 51.4
Cpa.g.c42332 Carica papaya HOM05D004705 ORTHO05D005595 2.3e-11 75.1 53 62.3
FAN07G2703 Fragaria x ananassa HOM05D004705 ORTHO05D005595 1.2e-09 69.3 77 42.9
Ah.02g118940 Amaranthus hybridus HOM05D003112 ORTHO05D005595 2.3e-08 65.1 65 53.8
Ah.06g184670 Amaranthus hybridus HOM05D004705 ORTHO05D005595 2.3e-08 65.1 45 71.1
Medtr1g041460 Medicago truncatula HOM05D004705 ORTHO05D005595 1.5e-07 62.4 49 61.2
unitig_26.g8886 Utricularia gibba HOM05D004705 ORTHO05D005595 3.4e-07 61.2 83 43.4
Cre17.g717400 Chlamydomonas reinhardtii HOM05D004705 ORTHO05D005595 9.8e-07 59.7 115 35.7


User provided reference genes

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