Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01017163001 Vitis vinifera HOM05D004738 ORTHO05D006439 7.0e-231 803.5 386 100.0
Prupe.3G075100 Prunus persica HOM05D004738 ORTHO05D006439 3.7e-187 658.3 384 81.2
CiPaw.02G152800 Carya illinoinensis HOM05D004738 ORTHO05D006439 1.5e-185 652.9 384 81.0
Gohir.A02G122900 Gossypium hirsutum HOM05D004738 ORTHO05D006439 9.9e-185 650.2 372 81.7
vmacro16939 Vaccinium macrocarpon HOM05D004738 ORTHO05D006439 2.2e-184 649.0 371 81.4
Dinv30535 Davidia involucrata HOM05D004738 ORTHO05D006439 2.9e-184 648.7 371 82.7
Rhsim12G0195800 Rhododendron simsii HOM05D004738 ORTHO05D006439 3.8e-184 648.3 371 81.9
Gorai.002G058000 Gossypium raimondii HOM05D004738 ORTHO05D006439 6.4e-184 647.5 372 81.5
Gohir.D03G073500 Gossypium hirsutum HOM05D004738 ORTHO05D006439 1.9e-183 646.0 372 81.5
Thecc.06G081700 Theobroma cacao HOM05D004738 ORTHO05D006439 7.1e-183 644.0 371 81.9
MD17G1198400 Malus domestica HOM05D004738 ORTHO05D006439 4.6e-182 641.3 371 81.7
Duzib235G1168 Durio zibethinus HOM05D004738 ORTHO05D006439 6.0e-182 641.0 382 79.8
TAR383G0518 Trochodendron aralioides HOM05D004738 ORTHO05D006439 1.0e-181 640.2 384 77.6
RcHm_v2.0_Chr2g0137281 Rosa chinensis HOM05D004738 ORTHO05D006439 1.8e-181 639.4 384 78.4
ECA247G3808 Erigeron canadensis HOM05D004738 ORTHO05D006439 3.9e-181 638.3 384 77.9
CSS0005409 Camellia sinensis var. sinensis HOM05D004738 ORTHO05D006439 5.1e-181 637.9 389 78.9
QL05p025470 Quercus lobata HOM05D004738 ORTHO05D006439 1.1e-180 636.7 385 77.9
Nn2g11846 Nelumbo nucifera HOM05D004738 ORTHO05D006439 3.3e-180 635.2 386 78.5
Nn8g39296 Nelumbo nucifera HOM05D004738 ORTHO05D006439 5.6e-180 634.4 386 78.2
arahy.Tifrunner.gnm1.ann1.2F1L5Z Arachis hypogaea HOM05D004738 ORTHO05D006439 1.3e-179 633.3 371 80.6
Actinidia08828 Actinidia chinensis HOM05D004738 ORTHO05D006439 1.6e-179 632.9 370 81.1
Eucgr.F02574 Eucalyptus grandis HOM05D004738 ORTHO05D006439 1.6e-179 632.9 378 79.4
Haze_16464 Corylus avellana HOM05D004738 ORTHO05D006439 3.7e-179 631.7 408 76.0
Cfa002046 Carpinus fangiana HOM05D004738 ORTHO05D006439 4.8e-179 631.3 384 79.9
Ciclev10025569m.g Citrus clementina HOM05D004738 ORTHO05D006439 1.1e-178 630.2 386 77.7
FvH4_6g30840 Fragaria vesca HOM05D004738 ORTHO05D006439 4.0e-178 628.2 384 77.9
COL.COLO4_02957 Corchorus olitorius HOM05D004738 ORTHO05D006439 6.9e-178 627.5 357 81.8
Gorai.009G132100 Gossypium raimondii HOM05D004738 ORTHO05D006439 1.2e-177 626.7 371 79.5
Potri.003G058500 Populus trichocarpa HOM05D004738 ORTHO05D006439 2.0e-177 625.9 384 76.6
CANSAT56G4214 Cannabis sativa HOM05D004738 ORTHO05D006439 2.6e-177 625.5 371 79.0
Cc04_g03640 Coffea canephora HOM05D004738 ORTHO05D006439 4.5e-177 624.8 371 78.2
FAN05G5687 Fragaria x ananassa HOM05D004738 ORTHO05D006439 5.8e-177 624.4 384 77.6
Gohir.A05G127000 Gossypium hirsutum HOM05D004738 ORTHO05D006439 1.3e-176 623.2 371 79.2
arahy.Tifrunner.gnm1.ann1.S5ELWT Arachis hypogaea HOM05D004738 ORTHO05D006439 2.2e-176 622.5 392 76.3
FAN09G3531 Fragaria x ananassa HOM05D004738 ORTHO05D006439 1.9e-175 619.4 386 76.9
Sabra03G0032700 Salix brachista HOM05D004738 ORTHO05D006439 2.5e-175 619.0 384 75.8
MELO3C023371.2 Cucumis melo HOM05D004738 ORTHO05D006439 1.6e-174 616.3 373 77.7
Cpa.g.sc10.174 Carica papaya HOM05D004738 ORTHO05D006439 2.1e-174 615.9 357 80.4
FAN02G1331 Fragaria x ananassa HOM05D004738 ORTHO05D006439 2.1e-174 615.9 384 76.8
HanXRQChr04g0096441 Helianthus annuus HOM05D004738 ORTHO05D006439 3.5e-174 615.1 371 77.4
CsaV3_7G032950 Cucumis sativus L. HOM05D004738 ORTHO05D006439 4.6e-174 614.8 371 77.9
FAN14G4632 Fragaria x ananassa HOM05D004738 ORTHO05D006439 7.9e-174 614.0 396 75.3
Glyma.15G012500 Glycine max HOM05D004738 ORTHO05D006439 2.3e-173 612.5 371 77.4
SGA_v2.0_scaffold37G14802 Striga asiatica HOM05D004738 ORTHO05D006439 2.3e-173 612.5 384 76.3
Oeu022417.1 Olea europaea HOM05D004738 ORTHO05D006439 3.0e-173 612.1 373 78.0
Lsat_1_v5_gn_1_34140 Lactuca sativa HOM05D004738 ORTHO05D006439 1.1e-172 610.1 372 77.2
MSTRG.11096 Avicennia marina HOM05D004738 ORTHO05D006439 1.5e-172 609.8 371 77.1
Lalb_Chr14g0373571 Lupinus albus HOM05D004738 ORTHO05D006439 1.9e-172 609.4 383 76.0
VMungo1080G0347 Vigna mungo HOM05D004738 ORTHO05D006439 1.9e-172 609.4 371 76.8
Sed0002572 Sechium edule HOM05D004738 ORTHO05D006439 4.3e-172 608.2 384 75.0
DCAR_026302 Daucus carota HOM05D004738 ORTHO05D006439 7.4e-172 607.4 371 77.1
PGR102G2550 Punica granatum HOM05D004738 ORTHO05D006439 1.6e-171 606.3 352 79.3
HanXRQChr02g0032631 Helianthus annuus HOM05D004738 ORTHO05D006439 2.1e-171 605.9 374 76.2
TWI12G0818 Tripterygium wilfordii HOM05D004738 ORTHO05D006439 3.7e-171 605.1 385 74.8
Lj9A505T66 Lonicera japonica HOM05D004738 ORTHO05D006439 4.8e-171 604.7 357 80.1
Lj3g0008822 Lotus japonicus HOM05D004738 ORTHO05D006439 1.1e-170 603.6 371 76.0
Lalb_Chr22g0351141 Lupinus albus HOM05D004738 ORTHO05D006439 1.1e-170 603.6 371 77.1
Nitab4.5_0005784g0040 Nicotiana tabacum HOM05D004738 ORTHO05D006439 1.1e-170 603.6 371 76.5
Aqoxy7G03780 Aquilegia oxysepala HOM05D004738 ORTHO05D006439 2.4e-170 602.4 384 74.2
Hund06597 Selenicereus undatus HOM05D004738 ORTHO05D006439 2.4e-170 602.4 386 74.6
Sc12g0009100 Simmondsia chinensis HOM05D004738 ORTHO05D006439 2.4e-170 602.4 373 77.2
Manes.04G120700 Manihot esculenta HOM05D004738 ORTHO05D006439 3.1e-170 602.1 383 74.2
Ca_01103_v3 Cicer arietinum L. HOM05D004738 ORTHO05D006439 5.3e-170 601.3 371 76.5
TPR.G37250 Trifolium pratense HOM05D004738 ORTHO05D006439 6.9e-170 600.9 371 75.2
Peaxi162Scf00015g00234 Petunia axillaris HOM05D004738 ORTHO05D006439 9.0e-170 600.5 371 76.0
Glyma.13G361400 Glycine max HOM05D004738 ORTHO05D006439 1.2e-169 600.1 369 76.2
Medtr2g102510 Medicago truncatula HOM05D004738 ORTHO05D006439 1.5e-169 599.7 371 76.0
PGSC0003DMG400002559 Solanum tuberosum HOM05D004738 ORTHO05D006439 3.4e-169 598.6 371 76.3
Migut.I00837 Erythranthe guttata HOM05D004738 ORTHO05D006439 1.3e-168 596.7 371 74.9
Lj3g0001201 Lotus japonicus HOM05D004738 ORTHO05D006439 1.7e-168 596.3 371 76.5
Potri.001G177300 Populus trichocarpa HOM05D004738 ORTHO05D006439 1.1e-167 593.6 385 73.5
Solyc03g120430.3 Solanum lycopersicum HOM05D004738 ORTHO05D006439 1.1e-167 593.6 371 75.5
Sopen00g008920 Solanum pennellii HOM05D004738 ORTHO05D006439 1.1e-167 593.6 371 75.5
Sopen03g039310 Solanum pennellii HOM05D004738 ORTHO05D006439 1.1e-167 593.6 371 75.5
Nitab4.5_0002424g0040 Nicotiana tabacum HOM05D004738 ORTHO05D006439 3.2e-167 592.0 392 71.9
Phvul.005G173200 Phaseolus vulgaris HOM05D004738 ORTHO05D006439 5.5e-167 591.3 371 74.4
THA.LOC104808210 Tarenaya hassleriana HOM05D004738 ORTHO05D006439 7.2e-167 590.9 373 75.3
Sp5g35430 Schrenkiella parvula HOM05D004738 ORTHO05D006439 1.2e-166 590.1 371 74.9
BolC2t09746H Brassica oleracea HOM05D004738 ORTHO05D006439 3.6e-166 588.6 371 74.7
Thhalv10018540m.g Eutrema salsugineum HOM05D004738 ORTHO05D006439 1.8e-165 586.3 371 75.2
A02p23600 Brassica napus HOM05D004738 ORTHO05D006439 2.3e-165 585.9 371 74.1
C02p37360 Brassica napus HOM05D004738 ORTHO05D006439 2.3e-165 585.9 371 74.1
BraA02t07352Z Brassica rapa HOM05D004738 ORTHO05D006439 5.1e-165 584.7 371 73.9
CARHR074130 Cardamine hirsuta HOM05D004738 ORTHO05D006439 1.1e-164 583.6 372 75.3
AL2G41120 Arabidopsis lyrata HOM05D004738 ORTHO05D006439 1.9e-164 582.8 391 72.1
MBI01_g13569_MAGBIO Magnolia biondii HOM05D004738 ORTHO05D006439 4.3e-164 581.6 369 73.4
CAN.G438.45 Capsicum annuum HOM05D004738 ORTHO05D006439 5.7e-164 581.3 383 72.8
BcaB02g08689 Brassica carinata HOM05D004738 ORTHO05D006439 7.4e-164 580.9 381 72.7
A07p45280 Brassica napus HOM05D004738 ORTHO05D006439 7.4e-164 580.9 381 73.5
Carub.0002s2719 Capsella rubella HOM05D004738 ORTHO05D006439 9.7e-164 580.5 385 72.7
THA.LOC104812476 Tarenaya hassleriana HOM05D004738 ORTHO05D006439 9.7e-164 580.5 371 73.9
BcaB02g07276 Brassica carinata HOM05D004738 ORTHO05D006439 1.3e-163 580.1 373 73.5
EL10Ac9g21974 Beta vulgaris HOM05D004738 ORTHO05D006439 1.6e-163 579.7 374 74.9
BcaB05g25272 Brassica carinata HOM05D004738 ORTHO05D006439 1.6e-163 579.7 373 73.5
BraA07t30308Z Brassica rapa HOM05D004738 ORTHO05D006439 2.2e-163 579.3 372 74.7
A07p26650 Brassica napus HOM05D004738 ORTHO05D006439 3.7e-163 578.6 372 74.7
BcaC08g45309 Brassica carinata HOM05D004738 ORTHO05D006439 4.8e-163 578.2 372 74.5
C06p29130 Brassica napus HOM05D004738 ORTHO05D006439 4.8e-163 578.2 372 74.5
BolC6t38077H Brassica oleracea HOM05D004738 ORTHO05D006439 4.8e-163 578.2 372 74.5
BraA07t32032Z Brassica rapa HOM05D004738 ORTHO05D006439 4.8e-163 578.2 381 72.7
C06p54140 Brassica napus HOM05D004738 ORTHO05D006439 1.1e-162 577.0 383 72.3
BcaC08g47585 Brassica carinata HOM05D004738 ORTHO05D006439 3.1e-162 575.5 371 73.6
AUR62011604 Chenopodium quinoa HOM05D004738 ORTHO05D006439 4.1e-162 575.1 368 74.5
AUR62016418 Chenopodium quinoa HOM05D004738 ORTHO05D006439 6.9e-162 574.3 379 73.1
PSO210G3793 Papaver somniferum HOM05D004738 ORTHO05D006439 1.2e-161 573.5 392 70.7
CSS0037007 Camellia sinensis var. sinensis HOM05D004738 ORTHO05D006439 3.4e-161 572.0 357 76.5
PSO210G6241 Papaver somniferum HOM05D004738 ORTHO05D006439 2.9e-160 568.9 392 70.2
Aa31LG4G650 Aethionema arabicum HOM05D004738 ORTHO05D006439 3.8e-160 568.5 384 70.3
CDE06G1313 Ceratophyllum demersum HOM05D004738 ORTHO05D006439 5.0e-160 568.2 390 70.3
Duzib192G0909 Durio zibethinus HOM05D004738 ORTHO05D006439 9.4e-159 563.9 330 80.6
ClCG09G002360 Citrullus lanatus HOM05D004738 ORTHO05D006439 1.2e-158 563.5 366 74.0
Ah.01g021090 Amaranthus hybridus HOM05D004738 ORTHO05D006439 4.6e-158 561.6 354 75.1
BolC6t40426H Brassica oleracea HOM05D004738 ORTHO05D006439 1.4e-157 560.1 402 67.9
Os01g0682500 Oryza sativa ssp. japonica HOM05D004738 ORTHO05D006439 1.8e-157 559.7 360 72.8
Gohir.D05G127900 Gossypium hirsutum HOM05D004738 ORTHO05D006439 6.3e-155 551.2 315 82.9
Zm00001eb267390 Zea mays HOM05D004738 ORTHO05D006439 7.9e-150 534.3 343 72.0
Zm00001eb156570 Zea mays HOM05D004738 ORTHO05D006439 2.6e-145 519.2 353 69.7
ATR0083G024 Amborella trichopoda HOM05D004738 ORTHO05D006439 1.3e-144 516.9 369 66.4
Nn2g11397 Nelumbo nucifera HOM05D004738 ORTHO05D006439 1.5e-143 513.5 353 69.4
unitig_21.g20511 Utricularia gibba HOM05D004738 ORTHO05D006439 1.0e-136 490.7 383 64.0
Oeu033460.1 Olea europaea HOM05D004738 ORTHO05D006439 4.2e-135 485.3 333 70.9
AT1G80380 Arabidopsis thaliana HOM05D004738 ORTHO05D006439 2.8e-131 472.6 284 77.5
HPP92_011481 Vanilla planifolia HOM05D004738 ORTHO05D006439 6.3e-131 471.5 339 68.1
SHI09688 Sapria himalayana HOM05D004738 ORTHO05D006439 2.9e-128 462.6 344 64.5
Pp3c18_16070 Physcomitrium patens HOM05D004738 ORTHO05D006439 3.6e-126 455.7 329 63.8
SEGI_20298 Sequoiadendron giganteum HOM05D004738 ORTHO05D006439 2.0e-121 439.9 368 58.2
HPP92_011544 Vanilla planifolia HOM05D004738 ORTHO05D006439 7.3e-119 431.4 308 67.2
Psat5g299520 Pisum sativum HOM05D004738 ORTHO05D006439 4.7e-118 428.7 273 73.3
BcaC03g15976 Brassica carinata HOM05D004738 ORTHO05D006439 6.4e-115 418.3 242 81.0
AagrBONN_evm.TU.Sc2ySwM_368.190 Anthoceros agrestis HOM05D004738 ORTHO05D006439 1.8e-114 416.8 333 58.9
SMO147G0425 Selaginella moellendorffii HOM05D004738 ORTHO05D006439 1.2e-113 414.1 335 57.3
Mapoly0010s0209 Marchantia polymorpha HOM05D004738 ORTHO05D006439 2.1e-110 403.3 330 57.0
CBR_g49861 Chara braunii HOM05D004738 ORTHO05D006439 5.4e-106 388.7 336 54.5
arahy.Tifrunner.gnm1.ann1.7R7SHJ Arachis hypogaea HOM05D004738 ORTHO05D006439 1.0e-96 357.8 281 62.6
arahy.Tifrunner.gnm1.ann1.1FY4ZR Arachis hypogaea HOM05D004738 ORTHO05D007023 1.4e-90 337.4 272 62.5
Cre12.g542300 Chlamydomonas reinhardtii HOM05D004738 ORTHO05D006439 6.6e-88 328.6 329 48.0
MCO11G539 Micromonas commoda HOM05D004738 ORTHO05D006439 1.1e-79 301.2 339 43.7
PRCOL_00005044 Prasinoderma coloniale HOM05D004738 ORTHO05D006439 5.4e-74 282.3 326 46.3
Dinv38066 Davidia involucrata HOM05D004738 ORTHO05D006439 2.9e-67 260.0 145 85.5
arahy.Tifrunner.gnm1.ann1.CI84PE Arachis hypogaea HOM05D004738 ORTHO05D006439 6.9e-61 238.8 195 62.6
Hund00584 Selenicereus undatus HOM05D004738 ORTHO05D006439 2.1e-57 227.3 124 82.3
Nn4g26563 Nelumbo nucifera HOM05D004738 ORTHO05D006439 2.8e-38 163.7 242 41.7
TAR636G0147 Trochodendron aralioides HOM05D004738 ORTHO05D051490 3.7e-38 163.3 164 45.1
TAR636G3653 Trochodendron aralioides HOM05D004738 ORTHO05D051490 8.2e-38 162.2 164 45.1
arahy.Tifrunner.gnm1.ann1.9N81UM Arachis hypogaea HOM05D005815 ORTHO05D007023 1.5e-36 157.9 283 36.4
Ah.09g223940 Amaranthus hybridus HOM05D004738 ORTHO05D001643 1.6e-33 147.9 99 72.7
Dinv38065 Davidia involucrata HOM05D004738 ORTHO05D006439 1.0e-32 145.2 78 85.9
Sabra01G0149000 Salix brachista HOM05D004738 ORTHO05D006439 2.1e-25 120.9 129 46.5
arahy.Tifrunner.gnm1.ann1.GN5QKJ Arachis hypogaea HOM05D005815 ORTHO05D007023 9.1e-21 105.5 104 51.9
Nn1g05393 Nelumbo nucifera HOM05D004738 ORTHO05D280673 8.0e-17 92.4 82 53.7
Pp3c21_6430 Physcomitrium patens HOM05D004738 ORTHO05D314778 3.0e-08 63.9 52 48.1
Nn3g18662 Nelumbo nucifera HOM05D004738 ORTHO05D273315 7.5e-07 59.3 46 56.5


User provided reference genes

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