Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01017152001 Vitis vinifera HOM05D004831 ORTHO05D003975 0.0e+00 1721.4 900 100.0
Dinv30528 Davidia involucrata HOM05D004831 ORTHO05D003975 1.6e-185 654.1 900 46.3
Actinidia01793 Actinidia chinensis HOM05D004831 ORTHO05D003975 2.8e-182 643.3 910 46.6
Dinv38059 Davidia involucrata HOM05D004831 ORTHO05D003975 3.1e-165 586.6 900 43.7
TAR374G0326 Trochodendron aralioides HOM05D004831 ORTHO05D003975 1.9e-162 577.4 898 43.1
TAR626G1756 Trochodendron aralioides HOM05D004831 ORTHO05D003975 1.9e-162 577.4 898 43.1
Cfa002050 Carpinus fangiana HOM05D004831 ORTHO05D003975 1.2e-161 574.7 944 44.6
CSS0014524 Camellia sinensis var. sinensis HOM05D004831 ORTHO05D003975 8.0e-161 572.0 993 40.1
QL05p025363 Quercus lobata HOM05D004831 ORTHO05D003975 5.4e-157 559.3 907 43.2
TAR383G0472 Trochodendron aralioides HOM05D004831 ORTHO05D003975 1.5e-154 551.2 911 42.2
Cpa.g.sc10.161 Carica papaya HOM05D004831 ORTHO05D003975 2.3e-144 517.3 864 43.5
Ciclev10024870m.g Citrus clementina HOM05D004831 ORTHO05D003975 2.9e-142 510.4 921 41.0
Rhsim08G0218700 Rhododendron simsii HOM05D004831 ORTHO05D003975 4.0e-136 490.0 909 41.0
Gorai.011G078100 Gossypium raimondii HOM05D004831 ORTHO05D003975 4.7e-129 466.5 895 39.0
TWI18G0228 Tripterygium wilfordii HOM05D004831 ORTHO05D003975 3.1e-128 463.8 892 37.6
Thecc.06G083000 Theobroma cacao HOM05D004831 ORTHO05D003975 4.0e-128 463.4 897 39.5
Potri.003G056600 Populus trichocarpa HOM05D004831 ORTHO05D003975 1.3e-126 458.4 918 37.6
Prupe.3G073700 Prunus persica HOM05D004831 ORTHO05D003975 1.7e-126 458.0 906 37.6
Actinidia15826 Actinidia chinensis HOM05D004831 ORTHO05D003975 2.9e-126 457.2 465 54.0
Gohir.A10G079000 Gossypium hirsutum HOM05D004831 ORTHO05D003975 7.1e-125 452.6 897 38.7
TWI12G0693 Tripterygium wilfordii HOM05D004831 ORTHO05D003975 9.3e-125 452.2 902 37.0
Atru.chr1.3226 Acer truncatum HOM05D004831 ORTHO05D003975 3.5e-124 450.3 903 38.4
Gohir.D10G072500 Gossypium hirsutum HOM05D004831 ORTHO05D003975 3.5e-124 450.3 897 38.6
vmacro18933 Vaccinium macrocarpon HOM05D004831 ORTHO05D003975 4.8e-121 439.9 850 39.5
CANSAT56G2043 Cannabis sativa HOM05D004831 ORTHO05D003975 1.1e-117 428.7 907 37.7
Lj5A62T33 Lonicera japonica HOM05D004831 ORTHO05D003975 2.4e-117 427.6 955 36.2
ClCG09G002300 Citrullus lanatus HOM05D004831 ORTHO05D003975 7.1e-117 426.0 920 36.1
MELO3C023366.2 Cucumis melo HOM05D004831 ORTHO05D003975 2.7e-116 424.1 918 36.9
CsaV3_7G033010 Cucumis sativus L. HOM05D004831 ORTHO05D003975 1.8e-115 421.4 920 36.6
Manes.11G052100 Manihot esculenta HOM05D004831 ORTHO05D003975 5.1e-115 419.9 930 35.7
Hma1.2p1_2171F.1_g315970 Hydrangea macrophylla HOM05D004831 ORTHO05D003975 1.1e-114 418.7 902 36.8
Duzib235G0180 Durio zibethinus HOM05D004831 ORTHO05D003975 2.5e-114 417.5 848 36.9
Potri.001G178200 Populus trichocarpa HOM05D004831 ORTHO05D003975 7.6e-111 406.0 921 35.2
Nn8g39278 Nelumbo nucifera HOM05D004831 ORTHO05D003975 1.3e-110 405.2 940 34.8
Sabra03G0032100 Salix brachista HOM05D004831 ORTHO05D003975 8.4e-110 402.5 949 35.7
Hma1.2p1_0682F.1_g202670 Hydrangea macrophylla HOM05D004831 ORTHO05D003975 4.2e-109 400.2 838 37.1
Gohir.A09G084100 Gossypium hirsutum HOM05D004831 ORTHO05D003975 1.8e-107 394.8 807 38.2
Sed0027172 Sechium edule HOM05D004831 ORTHO05D003975 9.6e-106 389.0 913 35.0
CiPaw.02G152200 Carya illinoinensis HOM05D004831 ORTHO05D003975 3.1e-104 384.0 393 56.2
Gohir.D09G083900 Gossypium hirsutum HOM05D004831 ORTHO05D003975 9.0e-104 382.5 809 37.2
Oeu021950.1 Olea europaea HOM05D004831 ORTHO05D003975 2.2e-102 377.9 932 36.1
Gorai.006G099900 Gossypium raimondii HOM05D004831 ORTHO05D003975 1.6e-100 371.7 807 36.8
PGSC0003DMG400002560 Solanum tuberosum HOM05D004831 ORTHO05D003975 2.1e-100 371.3 900 34.3
Glyma.15G013200 Glycine max HOM05D004831 ORTHO05D003975 2.7e-100 370.9 907 33.4
RcHm_v2.0_Chr2g0137511 Rosa chinensis HOM05D004831 ORTHO05D003975 6.0e-100 369.8 903 34.6
Hma1.2p1_0323F.1_g125270 Hydrangea macrophylla HOM05D004831 ORTHO05D003975 7.9e-100 369.4 865 35.4
Sopen03g039230 Solanum pennellii HOM05D004831 ORTHO05D003975 2.5e-98 364.4 900 33.7
Glyma.13G360700 Glycine max HOM05D004831 ORTHO05D003975 1.6e-97 361.7 922 33.0
Sc15g0001240 Simmondsia chinensis HOM05D004831 ORTHO05D003975 2.8e-97 360.9 917 35.0
Oeu024063.2 Olea europaea HOM05D004831 ORTHO05D003975 6.3e-97 359.8 417 48.7
Solyc03g120340.3 Solanum lycopersicum HOM05D004831 ORTHO05D003975 6.3e-97 359.8 900 33.4
Eucgr.F03008 Eucalyptus grandis HOM05D004831 ORTHO05D003975 9.0e-96 355.9 899 33.1
Duzib160G0042 Durio zibethinus HOM05D004831 ORTHO05D003975 7.6e-95 352.8 818 36.6
PGR102G0340 Punica granatum HOM05D004831 ORTHO05D003975 1.2e-92 345.5 966 33.3
CAN.G438.52 Capsicum annuum HOM05D004831 ORTHO05D003975 1.6e-92 345.1 900 33.0
Hund06602 Selenicereus undatus HOM05D004831 ORTHO05D003975 7.4e-90 336.3 906 32.8
Lalb_Chr24g0395761 Lupinus albus HOM05D004831 ORTHO05D003975 1.1e-88 332.4 912 31.4
Ca_24215_v3 Cicer arietinum L. HOM05D004831 ORTHO05D003975 5.9e-87 326.6 906 31.9
Cc04_g03580 Coffea canephora HOM05D004831 ORTHO05D003975 2.2e-86 324.7 892 32.8
Haze_16453 Corylus avellana HOM05D004831 ORTHO05D003975 4.2e-85 320.5 664 39.2
Peaxi162Scf00015g00247 Petunia axillaris HOM05D004831 ORTHO05D003975 3.6e-84 317.4 926 30.7
TPR.G31352 Trifolium pratense HOM05D004831 ORTHO05D003975 3.6e-84 317.4 932 32.5
MSTRG.22702 Avicennia marina HOM05D004831 ORTHO05D003975 1.0e-83 315.8 543 40.7
Migut.I00846 Erythranthe guttata HOM05D004831 ORTHO05D003975 2.3e-83 314.7 438 44.5
Phvul.005G172500 Phaseolus vulgaris HOM05D004831 ORTHO05D003975 3.3e-82 310.8 980 31.2
MD17G1197700 Malus domestica HOM05D004831 ORTHO05D003975 2.2e-81 308.1 858 31.9
arahy.Tifrunner.gnm1.ann1.NQW8T9 Arachis hypogaea HOM05D004831 ORTHO05D003975 1.8e-80 305.1 972 31.0
Lsat_1_v5_gn_1_34820 Lactuca sativa HOM05D004831 ORTHO05D003975 2.4e-80 304.7 902 31.3
Lj3g0022365 Lotus japonicus HOM05D004831 ORTHO05D003975 2.0e-79 301.6 892 29.7
Aa31sc115G30 Aethionema arabicum HOM05D004831 ORTHO05D003975 2.6e-79 301.2 909 31.9
COL.COLO4_30332 Corchorus olitorius HOM05D004831 ORTHO05D003975 1.3e-78 298.9 568 40.5
FAN09G2060 Fragaria x ananassa HOM05D004831 ORTHO05D003975 5.0e-78 297.0 898 31.6
PSO782G5420 Papaver somniferum HOM05D004831 ORTHO05D003975 1.1e-77 295.8 987 30.3
MBI01_g10032_MAGBIO Magnolia biondii HOM05D004831 ORTHO05D003975 7.2e-77 293.1 882 30.6
FAN14G0810 Fragaria x ananassa HOM05D004831 ORTHO05D003975 9.4e-77 292.7 899 31.4
Nitab4.5_0003159g0050 Nicotiana tabacum HOM05D004831 ORTHO05D003975 1.2e-76 292.4 932 30.4
Aa31LG7G15290 Aethionema arabicum HOM05D004831 ORTHO05D003975 3.0e-75 287.7 927 32.0
PSO063G2677 Papaver somniferum HOM05D004831 ORTHO05D003975 6.7e-75 286.6 998 29.9
HanXRQChr02g0032681 Helianthus annuus HOM05D004831 ORTHO05D003975 2.0e-74 285.0 899 29.1
Nitab4.5_0003885g0040 Nicotiana tabacum HOM05D004831 ORTHO05D003975 1.1e-72 279.3 937 30.2
arahy.Tifrunner.gnm1.ann1.5CE7DY Arachis hypogaea HOM05D004831 ORTHO05D003975 1.8e-72 278.5 923 29.9
SGA_v2.0_scaffold37G14809 Striga asiatica HOM05D004831 ORTHO05D003975 1.8e-72 278.5 936 29.6
AUR62011616 Chenopodium quinoa HOM05D004831 ORTHO05D003975 7.0e-72 276.6 910 30.4
HanXRQChr05g0163461 Helianthus annuus HOM05D004831 ORTHO05D003975 4.5e-71 273.9 896 28.0
EL10Ac9g21986 Beta vulgaris HOM05D004831 ORTHO05D003975 1.7e-70 271.9 910 30.5
FvH4_6g30920 Fragaria vesca HOM05D004831 ORTHO05D003975 3.8e-70 270.8 899 30.4
Medtr8g467560 Medicago truncatula HOM05D004831 ORTHO05D003975 1.2e-68 265.8 905 30.3
Manes.04G121450 Manihot esculenta HOM05D004831 ORTHO05D003975 5.2e-67 260.4 526 36.7
arahy.Tifrunner.gnm1.ann1.3B4S3M Arachis hypogaea HOM05D004831 ORTHO05D003975 2.2e-65 255.0 857 28.6
AUR62016432 Chenopodium quinoa HOM05D004831 ORTHO05D003975 1.8e-64 251.9 911 29.9
arahy.Tifrunner.gnm1.ann1.Y8U4CK Arachis hypogaea HOM05D004831 ORTHO05D003975 4.1e-64 250.8 867 29.1
DCAR_026304 Daucus carota HOM05D004831 ORTHO05D003975 4.1e-64 250.8 367 42.0
THA.LOC104812471 Tarenaya hassleriana HOM05D004831 ORTHO05D003975 4.1e-64 250.8 922 31.6
Phvul.002G299500 Phaseolus vulgaris HOM05D004831 ORTHO05D003975 2.5e-61 241.5 393 40.5
Medtr6g068960 Medicago truncatula HOM05D004831 ORTHO05D003975 9.4e-61 239.6 827 29.5
CARHR016160 Cardamine hirsuta HOM05D004831 ORTHO05D003975 1.2e-60 239.2 926 30.7
Sed0009949 Sechium edule HOM05D004831 ORTHO05D003975 3.6e-60 237.7 749 31.5
Lalb_Chr15g0078831 Lupinus albus HOM05D004831 ORTHO05D003975 6.1e-60 236.9 841 30.2
Ah.01g021180 Amaranthus hybridus HOM05D004831 ORTHO05D003975 1.8e-59 235.3 908 28.0
Aqoxy7G01849 Aquilegia oxysepala HOM05D004831 ORTHO05D003975 8.3e-57 226.5 897 28.0
CDE04G1285 Ceratophyllum demersum HOM05D004831 ORTHO05D003975 1.8e-56 225.3 918 27.5
FAN02G3038 Fragaria x ananassa HOM05D004831 ORTHO05D003975 1.6e-55 222.2 759 29.2
Sp1g13970 Schrenkiella parvula HOM05D004831 ORTHO05D003975 1.7e-54 218.8 913 28.8
Lsat_1_v5_gn_9_45780 Lactuca sativa HOM05D004831 ORTHO05D003975 1.1e-53 216.1 829 29.2
BcaC05g25641 Brassica carinata HOM05D004831 ORTHO05D003975 2.3e-51 208.4 908 28.7
A06p11680 Brassica napus HOM05D004831 ORTHO05D003975 2.0e-50 205.3 908 28.6
BraA06t24347Z Brassica rapa HOM05D004831 ORTHO05D003975 4.4e-50 204.1 914 28.7
Thhalv10006918m.g Eutrema salsugineum HOM05D004831 ORTHO05D003975 5.7e-50 203.8 924 28.5
Psat4g139520 Pisum sativum HOM05D004831 ORTHO05D003975 5.7e-50 203.8 504 32.3
Duzib192G1036 Durio zibethinus HOM05D004831 ORTHO05D003975 9.8e-50 203.0 403 40.9
AT1G15660 Arabidopsis thaliana HOM05D004831 ORTHO05D003975 2.2e-49 201.8 915 28.3
Actinidia15827 Actinidia chinensis HOM05D004831 ORTHO05D003975 2.8e-49 201.4 495 37.8
BolC5t30118H Brassica oleracea HOM05D004831 ORTHO05D003975 6.3e-49 200.3 911 28.5
ClCG05G013830 Citrullus lanatus HOM05D004831 ORTHO05D003975 5.4e-48 197.2 378 38.9
ECA247G1173 Erigeron canadensis HOM05D004831 ORTHO05D003975 3.5e-47 194.5 905 26.7
AL1G27760 Arabidopsis lyrata HOM05D004831 ORTHO05D003975 5.0e-46 190.7 914 28.8
Haze_24989 Corylus avellana HOM05D004831 ORTHO05D003975 5.0e-46 190.7 394 38.6
DCAR_009558 Daucus carota HOM05D004831 ORTHO05D003975 1.1e-45 189.5 565 32.4
BcaC05g25510 Brassica carinata HOM05D004831 ORTHO05D003975 3.7e-41 174.5 921 27.4
Carub.0001s1544 Capsella rubella HOM05D004831 ORTHO05D003975 7.0e-40 170.2 912 27.3
C05p13810 Brassica napus HOM05D004831 ORTHO05D012057 9.2e-40 169.9 854 27.9
unitig_62.g23772 Utricularia gibba HOM05D004831 ORTHO05D003975 5.0e-38 164.1 911 26.1
ATR0037G028 Amborella trichopoda HOM05D004831 ORTHO05D003975 1.1e-35 156.4 910 24.0
TAR624G1194 Trochodendron aralioides HOM05D004831 ORTHO05D003975 1.4e-35 156.0 148 60.1
Aa31LG7G300 Aethionema arabicum HOM05D004831 ORTHO05D003975 2.0e-26 125.6 758 26.1
SHI09311 Sapria himalayana HOM05D004831 ORTHO05D003975 2.0e-26 125.6 128 53.1
COL.COLO4_30333 Corchorus olitorius HOM05D004831 ORTHO05D003975 3.4e-26 124.8 135 51.9
HPP92_017895 Vanilla planifolia HOM05D004831 ORTHO05D003975 3.4e-26 124.8 109 58.7
Os01g0617700 Oryza sativa ssp. japonica HOM05D004831 ORTHO05D003975 7.5e-26 123.6 956 23.3
Aa31LG7G290 Aethionema arabicum HOM05D004831 ORTHO05D003975 3.0e-22 111.7 158 44.3
TPR.G24077 Trifolium pratense HOM05D004831 ORTHO05D003975 8.6e-22 110.2 145 46.9
MD09G1215000 Malus domestica HOM05D004831 ORTHO05D003975 1.5e-21 109.4 142 44.4
SHI09312 Sapria himalayana HOM05D004831 ORTHO05D003975 6.2e-20 104.0 262 32.1
Haze_16456 Corylus avellana HOM05D004831 ORTHO05D003975 1.2e-18 99.8 118 50.0
Migut.I00847 Erythranthe guttata HOM05D004831 ORTHO05D003975 2.0e-18 99.0 107 55.1
AagrBONN_evm.TU.Sc2ySwM_368.483__484 Anthoceros agrestis HOM05D004831 ORTHO05D003975 2.9e-17 95.1 150 42.7
Pp3c2_32580 Physcomitrium patens HOM05D004831 ORTHO05D003975 5.4e-16 90.9 176 34.7
Zm00001eb358290 Zea mays HOM05D018572 ORTHO05D003975 1.6e-15 89.4 95 48.4
BcaB03g14531 Brassica carinata HOM05D004831 ORTHO05D017393 7.8e-15 87.0 207 30.4
Mapoly0008s0161 Marchantia polymorpha HOM05D004831 ORTHO05D003975 1.7e-14 85.9 110 47.3
SMO203G0255 Selaginella moellendorffii HOM05D004831 ORTHO05D003975 2.3e-14 85.5 83 48.2
SEGI_34595 Sequoiadendron giganteum HOM05D004831 ORTHO05D003975 1.5e-10 72.8 217 29.5
Zm00001eb159780 Zea mays HOM05D018572 ORTHO05D003975 4.4e-10 71.2 313 25.9
Pp3c5_11060 Physcomitrium patens HOM05D004831 ORTHO05D003975 9.9e-10 70.1 84 41.7
Cre02.g079250 Chlamydomonas reinhardtii HOM05D004831 ORTHO05D003975 6.0e-07 60.8 71 42.3
HanXRQChr12g0366341 Helianthus annuus HOM05D004831 ORTHO05D003975 8.7e-06 57.0 82 40.2


User provided reference genes

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