Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01017058001 Vitis vinifera HOM05D005761 ORTHO05D007286 8.0e-88 327.0 160 100.0
Thecc.06G093100 Theobroma cacao HOM05D005761 ORTHO05D007286 8.9e-71 270.4 160 78.8
arahy.Tifrunner.gnm1.ann1.QAD112 Arachis hypogaea HOM05D005761 ORTHO05D007286 2.0e-70 269.2 160 77.5
Cc04_g07670 Coffea canephora HOM05D005761 ORTHO05D007286 3.4e-70 268.5 160 79.4
Manes.04G130300 Manihot esculenta HOM05D005761 ORTHO05D007286 4.4e-70 268.1 157 78.3
Dinv38013 Davidia involucrata HOM05D005761 ORTHO05D007286 5.8e-70 267.7 155 78.1
Duzib192G1004 Durio zibethinus HOM05D005761 ORTHO05D007286 5.8e-70 267.7 160 77.5
Gohir.A05G132200 Gossypium hirsutum HOM05D005761 ORTHO05D007286 5.8e-70 267.7 158 78.5
Gohir.D05G131700 Gossypium hirsutum HOM05D005761 ORTHO05D007286 5.8e-70 267.7 158 78.5
Gorai.009G135400 Gossypium raimondii HOM05D005761 ORTHO05D007286 5.8e-70 267.7 158 78.5
Atru.chr5.1334 Acer truncatum HOM05D005761 ORTHO05D007286 3.7e-69 265.0 158 76.6
arahy.Tifrunner.gnm1.ann1.IDML3X Arachis hypogaea HOM05D005761 ORTHO05D007286 4.9e-69 264.6 160 75.6
Ciclev10022630m.g Citrus clementina HOM05D005761 ORTHO05D007286 8.3e-69 263.8 160 75.0
Prupe.6G357100 Prunus persica HOM05D005761 ORTHO05D007286 2.4e-68 262.3 160 76.9
RcHm_v2.0_Chr2g0139151 Rosa chinensis HOM05D005761 ORTHO05D007286 3.2e-68 261.9 160 74.4
Atru.chr5.1303 Acer truncatum HOM05D005761 ORTHO05D007286 7.0e-68 260.8 160 74.4
COL.COLO4_30441 Corchorus olitorius HOM05D005761 ORTHO05D007286 1.2e-67 260.0 160 75.6
Eucgr.F03043 Eucalyptus grandis HOM05D005761 ORTHO05D007286 1.2e-67 260.0 160 74.4
FvH4_6g31840 Fragaria vesca HOM05D005761 ORTHO05D007286 2.7e-67 258.8 157 74.5
FAN14G3194 Fragaria x ananassa HOM05D005761 ORTHO05D007286 2.7e-67 258.8 157 74.5
MD17G1190700 Malus domestica HOM05D005761 ORTHO05D007286 2.7e-67 258.8 160 77.5
Sc12g0009490 Simmondsia chinensis HOM05D005761 ORTHO05D007286 2.7e-67 258.8 160 75.0
FAN09G1691 Fragaria x ananassa HOM05D005761 ORTHO05D007286 3.5e-67 258.5 156 74.4
Glyma.08G204400 Glycine max HOM05D005761 ORTHO05D007286 3.5e-67 258.5 161 75.8
Haze_16351 Corylus avellana HOM05D005761 ORTHO05D007286 4.6e-67 258.1 160 76.2
QL05p021523 Quercus lobata HOM05D005761 ORTHO05D007286 6.0e-67 257.7 159 75.5
CsaV3_3G005910 Cucumis sativus L. HOM05D005761 ORTHO05D007286 7.8e-67 257.3 160 73.8
Rhsim08G0224400 Rhododendron simsii HOM05D005761 ORTHO05D007286 1.0e-66 256.9 160 76.2
CSS0019454 Camellia sinensis var. sinensis HOM05D005761 ORTHO05D007286 1.3e-66 256.5 160 75.0
CSS0045926 Camellia sinensis var. sinensis HOM05D005761 ORTHO05D007286 1.3e-66 256.5 160 75.0
PGR102G2101 Punica granatum HOM05D005761 ORTHO05D007286 1.7e-66 256.1 163 73.6
Gohir.D10G069650 Gossypium hirsutum HOM05D005761 ORTHO05D007286 2.3e-66 255.8 160 74.4
Gorai.011G073900 Gossypium raimondii HOM05D005761 ORTHO05D007286 2.3e-66 255.8 160 74.4
Cfa014791 Carpinus fangiana HOM05D005761 ORTHO05D007286 5.0e-66 254.6 160 75.0
Gohir.A10G081800 Gossypium hirsutum HOM05D005761 ORTHO05D007286 5.0e-66 254.6 160 73.8
CiPaw.01G235200 Carya illinoinensis HOM05D005761 ORTHO05D007286 6.6e-66 254.2 160 74.4
Lj3g0012819 Lotus japonicus HOM05D005761 ORTHO05D007286 6.6e-66 254.2 160 74.4
FAN05G4602 Fragaria x ananassa HOM05D005761 ORTHO05D007286 8.6e-66 253.8 156 73.1
PGR102G0188 Punica granatum HOM05D005761 ORTHO05D007286 1.5e-65 253.1 163 73.6
Sabra01G0154700 Salix brachista HOM05D005761 ORTHO05D007286 1.9e-65 252.7 161 73.3
MELO3C016564.2 Cucumis melo HOM05D005761 ORTHO05D007286 2.5e-65 252.3 156 73.7
TWI75G0371 Tripterygium wilfordii HOM05D005761 ORTHO05D007286 3.3e-65 251.9 160 72.5
Potri.003G052000 Populus trichocarpa HOM05D005761 ORTHO05D007286 4.3e-65 251.5 161 73.3
EL10Ac9g22057 Beta vulgaris HOM05D005761 ORTHO05D007286 5.6e-65 251.1 160 73.1
Ca_06670_v3 Cicer arietinum L. HOM05D005761 ORTHO05D007286 5.6e-65 251.1 166 74.1
Lj9C509G5 Lonicera japonica HOM05D003521 ORTHO05D000476 7.3e-65 250.8 161 73.3
Hma1.2p1_1195F.1_g265890 Hydrangea macrophylla HOM05D005761 ORTHO05D007286 1.2e-64 250.0 160 73.8
vmacro18882 Vaccinium macrocarpon HOM05D005761 ORTHO05D007286 1.2e-64 250.0 160 74.4
Cpa.g.sc33.106 Carica papaya HOM05D005761 ORTHO05D007286 1.6e-64 249.6 157 74.5
Nn2g11672 Nelumbo nucifera HOM05D005761 ORTHO05D007286 2.1e-64 249.2 153 77.1
Lj5A57G74 Lonicera japonica HOM05D005761 ORTHO05D007286 2.8e-64 248.8 158 73.4
Lalb_Chr25g0280001 Lupinus albus HOM05D005761 ORTHO05D007286 2.8e-64 248.8 161 74.5
VMungo0464G1667 Vigna mungo HOM05D005761 ORTHO05D007286 2.8e-64 248.8 156 75.6
CAN.G438.30 Capsicum annuum HOM05D005761 ORTHO05D007286 3.6e-64 248.4 160 72.5
Cfa002100 Carpinus fangiana HOM05D005761 ORTHO05D001133 3.6e-64 248.4 160 73.8
TWI12G1054 Tripterygium wilfordii HOM05D005761 ORTHO05D007286 3.6e-64 248.4 160 70.6
Phvul.010G148400 Phaseolus vulgaris HOM05D005761 ORTHO05D007286 4.7e-64 248.1 156 75.6
ClCG09G001920 Citrullus lanatus HOM05D005761 ORTHO05D007286 6.2e-64 247.7 154 74.0
Sed0000486 Sechium edule HOM05D005761 ORTHO05D007286 6.2e-64 247.7 160 71.9
unitig_37.g12255 Utricularia gibba HOM05D005761 ORTHO05D007286 8.0e-64 247.3 155 75.5
Psat2g181000 Pisum sativum HOM05D005761 ORTHO05D007286 1.4e-63 246.5 165 70.9
Migut.I00937 Erythranthe guttata HOM05D005761 ORTHO05D007286 3.1e-63 245.4 156 75.0
Oeu000460.1 Olea europaea HOM05D005761 ORTHO05D007286 3.1e-63 245.4 156 73.1
SGA_v2.0_scaffold5G02550 Striga asiatica HOM05D005761 ORTHO05D007286 4.0e-63 245.0 160 73.8
Zm00001eb237310 Zea mays HOM05D005761 ORTHO05D007286 4.0e-63 245.0 160 72.5
DCAR_023065 Daucus carota HOM05D005761 ORTHO05D007286 5.2e-63 244.6 161 72.0
SGA_v2.0_scaffold80G25854 Striga asiatica HOM05D005761 ORTHO05D007286 5.2e-63 244.6 160 73.1
PSO063G2446 Papaver somniferum HOM05D005761 ORTHO05D007286 6.8e-63 244.2 153 75.8
CDE05G3104 Ceratophyllum demersum HOM05D005761 ORTHO05D007286 1.2e-62 243.4 143 79.0
PSO170G4248 Papaver somniferum HOM05D005761 ORTHO05D007286 1.5e-62 243.0 153 74.5
Solyc03g120610.3 Solanum lycopersicum HOM05D005761 ORTHO05D007286 1.5e-62 243.0 155 72.3
Sopen00g008190 Solanum pennellii HOM05D005761 ORTHO05D007286 1.5e-62 243.0 155 72.3
DCAR_016208 Daucus carota HOM05D005761 ORTHO05D007286 2.6e-62 242.3 159 70.4
PGSC0003DMG401002548 Solanum tuberosum HOM05D005761 ORTHO05D007286 3.4e-62 241.9 155 72.3
Medtr5g011180 Medicago truncatula HOM05D005761 ORTHO05D007286 4.4e-62 241.5 165 69.7
Lsat_1_v5_gn_4_103261 Lactuca sativa HOM05D005761 ORTHO05D007286 9.8e-62 240.4 161 68.9
Nn3g18106 Nelumbo nucifera HOM05D005761 ORTHO05D007286 1.3e-61 240.0 154 74.7
MBI01_g30861_MAGBIO Magnolia biondii HOM05D005761 ORTHO05D007286 1.7e-61 239.6 144 79.2
Oeu059462.1 Olea europaea HOM05D005761 ORTHO05D007286 2.2e-61 239.2 178 66.3
Cpa.g.sc37.42 Carica papaya HOM05D005761 ORTHO05D007286 2.9e-61 238.8 163 70.6
RcHm_v2.0_Chr2g0139101 Rosa chinensis HOM05D005761 ORTHO05D007286 2.9e-61 238.8 160 71.2
Ah.01g005570 Amaranthus hybridus HOM05D005761 ORTHO05D001133 6.4e-61 237.7 181 64.1
HanXRQChr09g0275451 Helianthus annuus HOM05D005761 ORTHO05D007286 6.4e-61 237.7 157 66.9
ECA232G2351 Erigeron canadensis HOM05D005761 ORTHO05D007286 1.1e-60 236.9 157 66.2
Os02g0275100 Oryza sativa ssp. japonica HOM05D005761 ORTHO05D007286 1.4e-60 236.5 141 77.3
Rhsim09G0202300 Rhododendron simsii HOM05D005761 ORTHO05D007286 2.4e-60 235.7 162 72.2
Nitab4.5_0007217g0020 Nicotiana tabacum HOM05D005761 ORTHO05D007286 5.4e-60 234.6 141 78.7
THA.LOC104813554 Tarenaya hassleriana HOM05D005761 ORTHO05D007286 5.4e-60 234.6 156 70.5
Nitab4.5_0001315g0120 Nicotiana tabacum HOM05D005761 ORTHO05D007286 1.2e-59 233.4 141 78.0
AUR62016504 Chenopodium quinoa HOM05D005761 ORTHO05D007286 2.1e-59 232.6 161 69.6
TAR624G1072 Trochodendron aralioides HOM05D005761 ORTHO05D007286 3.5e-59 231.9 153 72.5
HPP92_024576 Vanilla planifolia HOM05D005761 ORTHO05D007286 3.5e-59 231.9 149 73.8
MSTRG.22659 Avicennia marina HOM05D005761 ORTHO05D007286 6.0e-59 231.1 155 70.3
ClCG10G006430 Citrullus lanatus HOM05D005761 ORTHO05D007286 6.0e-59 231.1 160 68.8
TPR.G19588 Trifolium pratense HOM05D005761 ORTHO05D007286 7.8e-59 230.7 180 61.7
ATR0315G131 Amborella trichopoda HOM05D005761 ORTHO05D007286 3.9e-58 228.4 140 75.7
Nitab4.5_0006311g0030 Nicotiana tabacum HOM05D005761 ORTHO05D007286 5.1e-58 228.0 141 75.9
Peaxi162Scf00015g00136 Petunia axillaris HOM05D005761 ORTHO05D007286 8.6e-58 227.3 141 76.6
Carub.0001s1498 Capsella rubella HOM05D005761 ORTHO05D007286 3.6e-56 221.9 157 68.2
Aa31LG5G21060 Aethionema arabicum HOM05D000113 ORTHO05D001108 4.0e-55 218.4 157 66.2
Peaxi162Scf00029g02413 Petunia axillaris HOM05D005761 ORTHO05D007286 1.2e-54 216.9 160 66.9
CARHR015750 Cardamine hirsuta HOM05D005761 ORTHO05D007286 3.4e-54 215.3 157 67.5
Sp1g13540 Schrenkiella parvula HOM05D005761 ORTHO05D007286 1.7e-53 213.0 156 65.4
AL1G27310 Arabidopsis lyrata HOM05D005761 ORTHO05D007286 2.9e-53 212.2 157 66.2
Thhalv10008971m.g Eutrema salsugineum HOM05D005761 ORTHO05D007286 2.9e-53 212.2 156 66.0
BcaB03g13070 Brassica carinata HOM05D005761 ORTHO05D007286 4.9e-53 211.5 157 66.9
SalBow2G2609 Salvia bowleyana HOM05D005761 ORTHO05D007286 4.9e-53 211.5 201 57.2
BcaC07g38774 Brassica carinata HOM05D005761 ORTHO05D007286 1.1e-52 210.3 147 69.4
CANSAT56G0921 Cannabis sativa HOM05D005761 ORTHO05D007286 1.4e-52 209.9 162 62.3
AT1G15220 Arabidopsis thaliana HOM05D005761 ORTHO05D007286 3.2e-52 208.8 157 65.6
A06p11220 Brassica napus HOM05D005761 ORTHO05D007286 1.2e-51 206.8 157 66.2
BraA06t24302Z Brassica rapa HOM05D005761 ORTHO05D007286 1.2e-51 206.8 157 66.2
C05p13350 Brassica napus HOM05D005761 ORTHO05D007286 3.5e-51 205.3 142 71.1
Actinidia32723 Actinidia chinensis HOM05D005761 ORTHO05D007286 7.8e-51 204.1 140 68.6
BolC5t30072H Brassica oleracea HOM05D005761 ORTHO05D007286 7.8e-51 204.1 142 70.4
A08p31680 Brassica napus HOM05D005761 ORTHO05D007286 3.0e-50 202.2 157 65.0
BraA08t35090Z Brassica rapa HOM05D005761 ORTHO05D007286 3.0e-50 202.2 157 65.0
C08p17060 Brassica napus HOM05D000103 ORTHO05D000049 1.1e-49 200.3 157 63.7
BolC8t49332H Brassica oleracea HOM05D005761 ORTHO05D007286 1.1e-49 200.3 157 63.7
TAR636G0897 Trochodendron aralioides HOM05D005761 ORTHO05D007286 3.1e-47 192.2 134 68.7
Duzib160G0104 Durio zibethinus HOM05D005761 ORTHO05D007286 5.8e-46 188.0 156 62.2
SHI11001 Sapria himalayana HOM05D005761 ORTHO05D007286 1.3e-45 186.8 153 57.5
Cfa014792 Carpinus fangiana HOM05D005761 ORTHO05D007286 4.2e-44 181.8 113 70.8
SEGI_40479 Sequoiadendron giganteum HOM05D005761 ORTHO05D007286 1.3e-42 176.8 132 59.1
Glyma.07G019200 Glycine max HOM05D005761 ORTHO05D007286 2.4e-36 156.0 93 79.6
BcaC05g25451 Brassica carinata HOM05D005761 ORTHO05D007286 4.2e-36 155.2 120 65.0
Mapoly0033s0089 Marchantia polymorpha HOM05D005761 ORTHO05D007286 3.5e-35 152.1 150 49.3
Pp3c3_29950 Physcomitrium patens HOM05D005761 ORTHO05D007286 6.0e-35 151.4 155 49.0
HanXRQChr05g0136521 Helianthus annuus HOM05D005761 ORTHO05D007286 1.4e-31 140.2 93 67.7
Sed0020064 Sechium edule HOM05D005761 ORTHO05D007286 5.8e-30 134.8 98 63.3
HanXRQChr10g0301331 Helianthus annuus HOM05D005761 ORTHO05D007286 5.4e-28 128.3 87 69.0
CBR_g32010 Chara braunii HOM05D005761 ORTHO05D007286 9.3e-28 127.5 141 47.5
Sopen03g039470 Solanum pennellii HOM05D005761 ORTHO05D007286 1.6e-24 116.7 73 67.1
HanXRQChr11g0333491 Helianthus annuus HOM05D005761 ORTHO05D007286 2.2e-21 106.3 125 44.8
HanXRQChr08g0232791 Helianthus annuus HOM05D005761 ORTHO05D007286 1.9e-20 103.2 125 44.0
Rhsim08G0224100 Rhododendron simsii HOM05D000414 ORTHO05D000276 1.0e-13 80.9 50 84.0
Rhsim08G0203300 Rhododendron simsii HOM05D005761 ORTHO05D007286 7.1e-12 74.7 47 66.0


User provided reference genes

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