Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01017045001 Vitis vinifera HOM05D004680 ORTHO05D005939 2.8e-260 901.4 429 100.0
Hma1.2p1_1262F.1_g271230 Hydrangea macrophylla HOM05D004680 ORTHO05D005939 2.6e-210 735.3 431 81.7
Dinv30468 Davidia involucrata HOM05D004680 ORTHO05D005939 7.6e-210 733.8 430 81.4
Peaxi162Scf00015g00135 Petunia axillaris HOM05D004680 ORTHO05D005939 5.4e-208 727.6 428 78.7
Nn3g18134 Nelumbo nucifera HOM05D004680 ORTHO05D005939 1.3e-206 723.0 429 78.8
CSS0039709 Camellia sinensis var. sinensis HOM05D004680 ORTHO05D005939 1.1e-205 719.9 431 78.4
TAR383G0102 Trochodendron aralioides HOM05D004680 ORTHO05D005939 1.1e-205 719.9 429 80.4
Solyc03g120490.3 Solanum lycopersicum HOM05D004680 ORTHO05D005939 3.3e-205 718.4 428 77.8
Migut.I00930 Erythranthe guttata HOM05D004680 ORTHO05D005939 5.6e-205 717.6 439 77.0
Sopen03g039370 Solanum pennellii HOM05D004680 ORTHO05D005939 7.4e-205 717.2 428 77.6
PGSC0003DMG400002632 Solanum tuberosum HOM05D004680 ORTHO05D005939 6.2e-204 714.1 428 77.3
Cc04_g02880 Coffea canephora HOM05D004680 ORTHO05D005939 2.4e-203 712.2 438 78.8
Nitab4.5_0000351g0010 Nicotiana tabacum HOM05D004680 ORTHO05D005939 9.0e-203 710.3 430 76.5
Cpa.g.sc109.43 Carica papaya HOM05D004680 ORTHO05D005939 1.5e-202 709.5 436 78.2
Nitab4.5_0009963g0010 Nicotiana tabacum HOM05D004680 ORTHO05D005939 4.5e-202 708.0 427 77.8
Nitab4.5_0006985g0040 Nicotiana tabacum HOM05D004680 ORTHO05D005939 7.6e-202 707.2 436 75.7
SalBow2G2497 Salvia bowleyana HOM05D004680 ORTHO05D005939 7.6e-202 707.2 435 76.6
MSTRG.22656 Avicennia marina HOM05D004680 ORTHO05D005939 9.9e-202 706.8 439 75.2
Sc12g0009530 Simmondsia chinensis HOM05D004680 ORTHO05D005939 9.9e-202 706.8 429 76.5
HanXRQChr02g0032341 Helianthus annuus HOM05D004680 ORTHO05D005939 2.4e-200 702.2 435 74.9
CSS0028346 Camellia sinensis var. sinensis HOM05D004680 ORTHO05D005939 5.5e-200 701.0 430 77.4
RcHm_v2.0_Chr2g0139361 Rosa chinensis HOM05D004680 ORTHO05D005939 5.5e-200 701.0 431 77.7
Manes.11G036700 Manihot esculenta HOM05D004680 ORTHO05D005939 9.3e-200 700.3 442 75.6
Sabra01G0153900 Salix brachista HOM05D004680 ORTHO05D005939 2.1e-199 699.1 439 76.5
vmacro18875 Vaccinium macrocarpon HOM05D004680 ORTHO05D005939 2.7e-199 698.7 441 76.2
EL10Ac9g22049 Beta vulgaris HOM05D004680 ORTHO05D005939 3.5e-199 698.4 437 75.1
FAN09G3354 Fragaria x ananassa HOM05D004680 ORTHO05D005939 4.6e-199 698.0 430 76.7
Rhsim08G0225100 Rhododendron simsii HOM05D004680 ORTHO05D005939 6.0e-199 697.6 441 76.9
Aqoxy7G01528 Aquilegia oxysepala HOM05D004680 ORTHO05D005939 1.3e-198 696.4 434 76.3
Migut.D01009 Erythranthe guttata HOM05D004680 ORTHO05D005939 1.3e-198 696.4 435 75.2
Potri.003G051200 Populus trichocarpa HOM05D004680 ORTHO05D005939 1.3e-198 696.4 439 76.1
Ah.01g021760 Amaranthus hybridus HOM05D004680 ORTHO05D005939 2.3e-198 695.7 432 75.5
MD09G1207900 Malus domestica HOM05D004680 ORTHO05D005939 3.0e-198 695.3 434 75.6
Prupe.3G064100 Prunus persica HOM05D004680 ORTHO05D005939 3.0e-198 695.3 437 75.1
Medtr2g101480 Medicago truncatula HOM05D004680 ORTHO05D005939 3.9e-198 694.9 437 76.4
FvH4_6g31940 Fragaria vesca HOM05D004680 ORTHO05D005939 5.1e-198 694.5 430 76.5
AUR62031868 Chenopodium quinoa HOM05D004680 ORTHO05D005939 6.7e-198 694.1 435 74.9
Eucgr.F03051 Eucalyptus grandis HOM05D004680 ORTHO05D005939 6.7e-198 694.1 447 74.9
Cfa002107 Carpinus fangiana HOM05D004680 ORTHO05D005939 1.1e-197 693.3 435 76.1
CANSAT56G3143 Cannabis sativa HOM05D004680 ORTHO05D005939 1.5e-197 693.0 434 76.3
TWI75G1773 Tripterygium wilfordii HOM05D004680 ORTHO05D005939 1.9e-197 692.6 441 76.2
SGA_v2.0_scaffold69G23355 Striga asiatica HOM05D004680 ORTHO05D005939 2.5e-197 692.2 441 75.1
TPR.G37217 Trifolium pratense HOM05D004680 ORTHO05D005939 2.5e-197 692.2 432 76.2
Ca_01140_v3 Cicer arietinum L. HOM05D004680 ORTHO05D005939 4.3e-197 691.4 440 75.9
CsaV3_3G023810 Cucumis sativus L. HOM05D004680 ORTHO05D005939 1.6e-196 689.5 431 75.6
Potri.001G186200 Populus trichocarpa HOM05D004680 ORTHO05D005939 1.6e-196 689.5 439 75.9
ClCG07G013200 Citrullus lanatus HOM05D004680 ORTHO05D005939 2.8e-196 688.7 433 75.5
AUR62016515 Chenopodium quinoa HOM05D004680 ORTHO05D005939 6.2e-196 687.6 435 74.3
Sabra03G0027900 Salix brachista HOM05D004680 ORTHO05D005939 1.1e-195 686.8 439 75.4
AL3G28890 Arabidopsis lyrata HOM05D004680 ORTHO05D005939 1.4e-195 686.4 439 74.7
Lsat_1_v5_gn_1_34800 Lactuca sativa HOM05D004680 ORTHO05D005939 1.4e-195 686.4 423 77.8
MD17G1189000 Malus domestica HOM05D004680 ORTHO05D005939 1.4e-195 686.4 434 74.7
MELO3C012983.2 Cucumis melo HOM05D004680 ORTHO05D005939 2.4e-195 685.6 433 75.3
PGR102G2014 Punica granatum HOM05D004680 ORTHO05D005939 2.4e-195 685.6 434 76.3
Thecc.06G095100 Theobroma cacao HOM05D004680 ORTHO05D005939 4.0e-195 684.9 451 73.2
Oeu050619.1 Olea europaea HOM05D004680 ORTHO05D005939 5.3e-195 684.5 510 67.1
Carub.0003s1595 Capsella rubella HOM05D004680 ORTHO05D005939 6.9e-195 684.1 437 74.6
Thhalv10020703m.g Eutrema salsugineum HOM05D004680 ORTHO05D005939 1.5e-194 682.9 437 74.1
AT3G16200 Arabidopsis thaliana HOM05D004680 ORTHO05D005939 2.0e-194 682.6 439 74.0
THA.LOC104817975 Tarenaya hassleriana HOM05D004680 ORTHO05D005939 2.6e-194 682.2 447 73.6
Phvul.005G169700 Phaseolus vulgaris HOM05D004680 ORTHO05D005939 3.4e-194 681.8 438 75.1
Glyma.15G017600 Glycine max HOM05D004680 ORTHO05D005939 5.8e-194 681.0 436 75.5
Nn2g11656 Nelumbo nucifera HOM05D004680 ORTHO05D005939 5.8e-194 681.0 397 79.8
Duzib192G0285 Durio zibethinus HOM05D004680 ORTHO05D005939 7.6e-194 680.6 451 72.9
CARHR091390 Cardamine hirsuta HOM05D004680 ORTHO05D005939 1.3e-193 679.9 439 74.0
Sed0009248 Sechium edule HOM05D004680 ORTHO05D005939 1.3e-193 679.9 429 75.8
Lj3g0026249 Lotus japonicus HOM05D004680 ORTHO05D005939 1.7e-193 679.5 437 75.5
Sed0024237 Sechium edule HOM05D004680 ORTHO05D005939 2.2e-193 679.1 431 75.6
THA.LOC104815523 Tarenaya hassleriana HOM05D004680 ORTHO05D005939 2.2e-193 679.1 447 73.2
Ciclev10025565m.g Citrus clementina HOM05D004680 ORTHO05D005939 3.8e-193 678.3 442 73.8
Gorai.009G136000 Gossypium raimondii HOM05D004680 ORTHO05D005939 3.8e-193 678.3 451 72.7
Hund06644 Selenicereus undatus HOM05D004680 ORTHO05D005939 4.9e-193 677.9 433 73.4
QL05p021321 Quercus lobata HOM05D004680 ORTHO05D005939 6.5e-193 677.6 401 80.0
SalBow7G2677 Salvia bowleyana HOM05D004680 ORTHO05D005939 6.5e-193 677.6 426 75.4
CiPaw.02G147900 Carya illinoinensis HOM05D004680 ORTHO05D005939 8.4e-193 677.2 436 75.7
Lalb_Chr22g0351431 Lupinus albus HOM05D004680 ORTHO05D005939 8.4e-193 677.2 440 73.2
C05p50300 Brassica napus HOM05D004680 ORTHO05D005939 1.1e-192 676.8 439 72.9
Sp3g14570 Schrenkiella parvula HOM05D004680 ORTHO05D005939 1.9e-192 676.0 437 73.2
Gohir.A05G127800 Gossypium hirsutum HOM05D004680 ORTHO05D005939 5.5e-192 674.5 451 72.3
A05p33300 Brassica napus HOM05D004680 ORTHO05D005939 7.1e-192 674.1 437 72.5
BraA05t22155Z Brassica rapa HOM05D004680 ORTHO05D005939 7.1e-192 674.1 437 73.2
Nitab4.5_0011578g0010 Nicotiana tabacum HOM05D004680 ORTHO05D005939 7.1e-192 674.1 424 75.7
SGA_v2.0_scaffold4G02014 Striga asiatica HOM05D004680 ORTHO05D005939 9.3e-192 673.7 436 74.3
Duzib235G0372 Durio zibethinus HOM05D004680 ORTHO05D005939 2.1e-191 672.5 451 72.3
TWI12G0154 Tripterygium wilfordii HOM05D004680 ORTHO05D005939 2.1e-191 672.5 439 74.3
Glyma.13G356500 Glycine max HOM05D004680 ORTHO05D005939 3.5e-191 671.8 436 74.3
MSTRG.9470 Avicennia marina HOM05D004680 ORTHO05D005939 4.6e-191 671.4 430 75.1
FAN14G5860 Fragaria x ananassa HOM05D004680 ORTHO05D005939 4.6e-191 671.4 446 72.6
Gohir.D10G069100 Gossypium hirsutum HOM05D004680 ORTHO05D005939 4.6e-191 671.4 451 71.4
BcaC09g48589 Brassica carinata HOM05D004680 ORTHO05D005939 1.0e-190 670.2 439 72.7
Lalb_Chr24g0395991 Lupinus albus HOM05D004680 ORTHO05D005939 2.3e-190 669.1 443 71.6
Gorai.011G073000 Gossypium raimondii HOM05D004680 ORTHO05D005939 5.1e-190 667.9 451 71.0
A01p37900 Brassica napus HOM05D004680 ORTHO05D005939 6.7e-190 667.5 440 72.3
PSO566G0328 Papaver somniferum HOM05D004680 ORTHO05D005939 6.7e-190 667.5 442 73.3
BraA01t03850Z Brassica rapa HOM05D004680 ORTHO05D005939 8.7e-190 667.2 440 72.3
ECA247G0440 Erigeron canadensis HOM05D004680 ORTHO05D005939 1.9e-189 666.0 428 73.8
BolC5t33780H Brassica oleracea HOM05D004680 ORTHO05D005939 3.3e-189 665.2 434 72.1
BolC1t04776H Brassica oleracea HOM05D004680 ORTHO05D005939 4.3e-189 664.8 440 72.3
Gohir.A10G067300 Gossypium hirsutum HOM05D004680 ORTHO05D005939 5.7e-189 664.5 450 71.6
PSO782G2876 Papaver somniferum HOM05D004680 ORTHO05D005939 7.4e-189 664.1 406 77.3
C01p48080 Brassica napus HOM05D004680 ORTHO05D005939 2.8e-188 662.1 440 72.0
Lalb_Chr14g0373141 Lupinus albus HOM05D004680 ORTHO05D005939 1.1e-187 660.2 435 72.4
VMungo1080G0622 Vigna mungo HOM05D004680 ORTHO05D005939 6.9e-187 657.5 474 68.8
CDE02G3046 Ceratophyllum demersum HOM05D004680 ORTHO05D005939 2.9e-185 652.1 425 72.0
DCAR_023071 Daucus carota HOM05D004680 ORTHO05D005939 5.0e-185 651.4 431 72.4
arahy.Tifrunner.gnm1.ann1.0TRA3C Arachis hypogaea HOM05D004680 ORTHO05D005939 1.1e-184 650.2 359 81.9
arahy.Tifrunner.gnm1.ann1.I8Y04W Arachis hypogaea HOM05D004680 ORTHO05D005939 1.1e-184 650.2 359 81.9
Aa31LG8G3340 Aethionema arabicum HOM05D004680 ORTHO05D005939 1.4e-184 649.8 428 72.4
Peaxi162Scf00207g01238 Petunia axillaris HOM05D004680 ORTHO05D005939 4.2e-184 648.3 430 73.7
MBI04_g14933_MAGBIO Magnolia biondii HOM05D004680 ORTHO05D005939 2.7e-183 645.6 437 72.3
ATR0315G163 Amborella trichopoda HOM05D004680 ORTHO05D005939 7.4e-181 637.5 387 75.7
SGA_v2.0_scaffold5G02541 Striga asiatica HOM05D004680 ORTHO05D005939 1.7e-180 636.3 436 71.1
Actinidia32715 Actinidia chinensis HOM05D004680 ORTHO05D005939 6.3e-180 634.4 420 73.6
Manes.04G131400 Manihot esculenta HOM05D004680 ORTHO05D005939 2.6e-178 629.0 443 70.0
unitig_899.g14773 Utricularia gibba HOM05D004680 ORTHO05D005939 4.5e-178 628.2 433 68.6
Atru.BG.177.p Acer truncatum HOM05D004680 ORTHO05D005939 1.5e-173 613.2 322 87.0
QL11p016400 Quercus lobata HOM05D004680 ORTHO05D005939 1.5e-170 603.2 326 85.3
HPP92_021671 Vanilla planifolia HOM05D004680 ORTHO05D005939 4.5e-170 601.7 418 67.7
Lsat_1_v5_gn_4_101400 Lactuca sativa HOM05D004680 ORTHO05D005939 8.5e-169 597.4 423 68.8
Actinidia21693 Actinidia chinensis HOM05D004680 ORTHO05D005939 1.1e-168 597.0 347 80.1
Zm00001eb270670 Zea mays HOM05D004680 ORTHO05D005939 1.5e-160 570.1 404 68.3
SEGI_20570 Sequoiadendron giganteum HOM05D004680 ORTHO05D005939 5.2e-158 561.6 376 68.6
CiPaw.01G234300 Carya illinoinensis HOM05D004680 ORTHO05D005939 8.2e-156 554.3 291 86.6
Psat5g297320 Pisum sativum HOM05D004680 ORTHO05D005939 3.1e-155 552.4 290 85.2
FAN05G4921 Fragaria x ananassa HOM05D004680 ORTHO05D005939 7.2e-152 541.2 289 84.8
Dinv38006 Davidia involucrata HOM05D004680 ORTHO05D005939 3.6e-151 538.9 337 78.3
SHI25904 Sapria himalayana HOM05D004680 ORTHO05D005939 1.1e-147 527.3 290 81.4
Hma1.2p1_1617F.1_g293780 Hydrangea macrophylla HOM05D004680 ORTHO05D005939 2.3e-145 519.6 386 68.7
SMO147G0400 Selaginella moellendorffii HOM05D004680 ORTHO05D005939 8.6e-145 517.7 332 68.7
COL.COLO4_30464 Corchorus olitorius HOM05D004680 ORTHO05D005939 5.7e-141 505.0 270 85.2
Sc12g0009700 Simmondsia chinensis HOM05D004680 ORTHO05D005939 9.5e-128 461.1 293 73.0
Haze_16340 Corylus avellana HOM05D004680 ORTHO05D005939 4.0e-126 455.7 299 74.9
Gohir.D05G132300 Gossypium hirsutum HOM05D004680 ORTHO05D005939 1.6e-119 433.7 310 68.1
Pp3c17_20690 Physcomitrium patens HOM05D004680 ORTHO05D005939 1.6e-119 433.7 371 53.4
AagrBONN_evm.TU.Sc2ySwM_369.193 Anthoceros agrestis HOM05D004680 ORTHO05D005939 3.6e-119 432.6 285 68.4
SMO358G0106 Selaginella moellendorffii HOM05D004680 ORTHO05D005939 4.2e-107 392.5 357 49.9
HPP92_008141 Vanilla planifolia HOM05D004680 ORTHO05D005939 1.6e-98 364.0 267 68.9
SMO077G0005 Selaginella moellendorffii HOM05D004680 ORTHO05D005939 4.0e-94 349.4 318 51.3
SMO114G0076 Selaginella moellendorffii HOM05D004680 ORTHO05D005939 5.4e-91 339.0 338 48.5
Oeu063940.2 Olea europaea HOM05D004680 ORTHO05D007319 6.7e-65 252.3 179 66.5
Haze_11589 Corylus avellana HOM05D004680 ORTHO05D005939 1.7e-63 247.7 139 80.6
TWI75G1313 Tripterygium wilfordii HOM05D004680 ORTHO05D005939 2.6e-56 223.8 109 89.9
PGSC0003DMG400007734 Solanum tuberosum HOM05D004680 ORTHO05D005939 1.9e-51 207.6 120 79.2
HPP92_008142 Vanilla planifolia HOM05D004680 ORTHO05D005939 2.1e-50 204.1 124 74.2
SEGI_33813 Sequoiadendron giganteum HOM05D004680 ORTHO05D005939 1.8e-46 191.0 138 65.9
Oeu040360.1 Olea europaea HOM05D004680 ORTHO05D011268 8.5e-44 182.2 127 68.5
Hma1.2p1_1576F.1_g291660 Hydrangea macrophylla HOM05D004680 ORTHO05D005939 1.8e-33 147.9 85 78.8
Hma1.2p1_0033F.1_g020650 Hydrangea macrophylla HOM05D004680 ORTHO05D005939 5.2e-33 146.4 85 77.6
Zm00001eb389580 Zea mays HOM05D004680 ORTHO05D000383 1.0e-28 132.1 80 73.8
Atru.chr1.3422 Acer truncatum HOM05D004680 ORTHO05D005939 5.5e-27 126.3 101 60.4
HanXRQChr10g0311001 Helianthus annuus HOM05D004680 ORTHO05D005939 1.2e-13 82.0 109 44.0
Solyc07g014600.2 Solanum lycopersicum HOM05D004680 ORTHO05D005939 6.6e-12 76.3 52 69.2


User provided reference genes

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