Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01017036001 Vitis vinifera HOM05D006052 ORTHO05D007319 4.1e-50 201.1 99 100.0
Manes.04G131832 Manihot esculenta HOM05D006052 ORTHO05D007319 9.8e-36 153.3 99 72.7
Dinv37999 Davidia involucrata HOM05D006052 ORTHO05D007319 2.8e-35 151.8 99 74.7
EL10Ac9g22109 Beta vulgaris HOM05D006052 ORTHO05D007319 3.7e-35 151.4 91 75.8
AUR62031876 Chenopodium quinoa HOM05D006052 ORTHO05D007319 8.3e-35 150.2 93 74.2
CSS0026597 Camellia sinensis var. sinensis HOM05D006052 ORTHO05D007319 1.1e-34 149.8 99 72.7
Cc04_g02780 Coffea canephora HOM05D006052 ORTHO05D007319 1.4e-34 149.4 84 83.3
PGR102G0387 Punica granatum HOM05D006052 ORTHO05D007319 1.4e-34 149.4 99 70.7
CANSAT56G3932 Cannabis sativa HOM05D006052 ORTHO05D007319 3.1e-34 148.3 97 73.2
AUR62022170 Chenopodium quinoa HOM05D006052 ORTHO05D007319 3.1e-34 148.3 93 73.1
Gohir.A05G128200 Gossypium hirsutum HOM05D006052 ORTHO05D007319 3.1e-34 148.3 91 76.9
MBI04_g27065_MAGBIO Magnolia biondii HOM05D006052 ORTHO05D007319 3.1e-34 148.3 92 73.9
Sc15g0001990 Simmondsia chinensis HOM05D006052 ORTHO05D007319 7.0e-34 147.1 100 70.0
Nn3g18169 Nelumbo nucifera HOM05D006052 ORTHO05D007319 9.2e-34 146.7 93 74.2
Gohir.D05G132700 Gossypium hirsutum HOM05D006052 ORTHO05D007319 1.2e-33 146.4 91 75.8
Gorai.009G136400 Gossypium raimondii HOM05D006052 ORTHO05D007319 1.2e-33 146.4 91 75.8
Thecc.06G096200 Theobroma cacao HOM05D006052 ORTHO05D007319 1.2e-33 146.4 99 70.7
Actinidia39148 Actinidia chinensis HOM05D006052 ORTHO05D007319 1.6e-33 146.0 99 70.7
Ah.01g021850 Amaranthus hybridus HOM05D007180 ORTHO05D009028 1.6e-33 146.0 86 76.7
Ciclev10026826m.g Citrus clementina HOM05D006052 ORTHO05D007319 1.6e-33 146.0 98 71.4
Hma1.2p1_1689F.1_g297700 Hydrangea macrophylla HOM05D006052 ORTHO05D007319 2.0e-33 145.6 89 75.3
CDE02G2125 Ceratophyllum demersum HOM05D006052 ORTHO05D007319 2.7e-33 145.2 91 75.8
CSS0014721 Camellia sinensis var. sinensis HOM05D006052 ORTHO05D007319 3.5e-33 144.8 91 74.7
Dinv32171 Davidia involucrata HOM05D006052 ORTHO05D007319 3.5e-33 144.8 99 71.7
BcaB03g14752 Brassica carinata HOM05D006052 ORTHO05D007319 4.5e-33 144.4 97 71.1
CDE08G0656 Ceratophyllum demersum HOM05D006052 ORTHO05D007319 5.9e-33 144.1 89 77.5
Migut.I00924 Erythranthe guttata HOM05D006052 ORTHO05D007319 5.9e-33 144.1 100 69.0
TAR626G0898 Trochodendron aralioides HOM05D006052 ORTHO05D007319 5.9e-33 144.1 93 73.1
TAR636G2101 Trochodendron aralioides HOM05D006052 ORTHO05D007319 5.9e-33 144.1 93 73.1
arahy.Tifrunner.gnm1.ann1.69I5GX Arachis hypogaea HOM05D006052 ORTHO05D007319 7.8e-33 143.7 99 72.7
arahy.Tifrunner.gnm1.ann1.S0BGA2 Arachis hypogaea HOM05D006052 ORTHO05D007319 7.8e-33 143.7 99 72.7
Solyc03g120820.4 Solanum lycopersicum HOM05D006052 ORTHO05D007319 7.8e-33 143.7 94 72.3
arahy.Tifrunner.gnm1.ann1.NZ5FDW Arachis hypogaea HOM05D006052 ORTHO05D007319 1.0e-32 143.3 98 72.4
TWI18G1030 Tripterygium wilfordii HOM05D006052 ORTHO05D007319 1.0e-32 143.3 99 68.7
CiPaw.01G233600 Carya illinoinensis HOM05D006052 ORTHO05D007319 1.3e-32 142.9 98 69.4
vmacro16981 Vaccinium macrocarpon HOM05D006052 ORTHO05D007319 1.3e-32 142.9 96 71.9
HanXRQChr16g0501261 Helianthus annuus HOM05D006052 ORTHO05D007319 1.7e-32 142.5 91 74.7
Nitab4.5_0003039g0060 Nicotiana tabacum HOM05D006052 ORTHO05D007319 1.7e-32 142.5 88 75.0
Peaxi162Scf00038g00824 Petunia axillaris HOM05D006052 ORTHO05D007319 1.7e-32 142.5 100 69.0
Haze_16332 Corylus avellana HOM05D006052 ORTHO05D007319 2.3e-32 142.1 99 70.7
PGSC0003DMG402002538 Solanum tuberosum HOM05D006052 ORTHO05D007319 2.3e-32 142.1 94 71.3
Potri.001G187200 Populus trichocarpa HOM05D006052 ORTHO05D007319 2.9e-32 141.7 99 69.7
AL2G28930 Arabidopsis lyrata HOM05D006052 ORTHO05D007319 3.8e-32 141.4 99 68.7
AT1G66590 Arabidopsis thaliana HOM05D006052 ORTHO05D007319 3.8e-32 141.4 97 69.1
AT1G69750 Arabidopsis thaliana HOM05D006052 ORTHO05D007319 3.8e-32 141.4 97 69.1
Solyc12g044380.3 Solanum lycopersicum HOM05D006052 ORTHO05D007319 3.8e-32 141.4 88 75.0
Sopen12g022650 Solanum pennellii HOM05D006052 ORTHO05D007319 3.8e-32 141.4 88 75.0
PGSC0003DMG400026453 Solanum tuberosum HOM05D006052 ORTHO05D007319 3.8e-32 141.4 88 75.0
Thhalv10019223m.g Eutrema salsugineum HOM05D006052 ORTHO05D007319 5.0e-32 141.0 96 69.8
PSO566G0324 Papaver somniferum HOM05D006052 ORTHO05D007319 5.0e-32 141.0 94 73.4
HPP92_024167 Vanilla planifolia HOM05D006052 ORTHO05D007319 5.0e-32 141.0 93 71.0
DCAR_026339 Daucus carota HOM05D006052 ORTHO05D007319 6.6e-32 140.6 82 80.5
BcaB03g15501 Brassica carinata HOM05D006052 ORTHO05D007319 8.6e-32 140.2 87 77.0
FAN14G5158 Fragaria x ananassa HOM05D002582 ORTHO05D002781 8.6e-32 140.2 96 69.8
Medtr3g112340 Medicago truncatula HOM05D006052 ORTHO05D007319 8.6e-32 140.2 96 71.9
Medtr8g013760 Medicago truncatula HOM05D006052 ORTHO05D007319 8.6e-32 140.2 96 71.9
MSTRG.22652 Avicennia marina HOM05D006052 ORTHO05D007319 1.1e-31 139.8 84 76.2
A07p36160 Brassica napus HOM05D006052 ORTHO05D007319 1.1e-31 139.8 94 71.3
C06p43560 Brassica napus HOM05D006052 ORTHO05D007319 1.1e-31 139.8 94 71.3
BolC6t39428H Brassica oleracea HOM05D006052 ORTHO05D007319 1.1e-31 139.8 94 71.3
BraA07t31192Z Brassica rapa HOM05D006052 ORTHO05D007319 1.1e-31 139.8 94 71.3
Nitab4.5_0007758g0100 Nicotiana tabacum HOM05D006052 ORTHO05D007319 1.1e-31 139.8 84 75.0
CAN.G203.53 Capsicum annuum HOM05D006052 ORTHO05D007319 1.5e-31 139.4 97 70.1
FAN05G1983 Fragaria x ananassa HOM05D002582 ORTHO05D002781 1.5e-31 139.4 91 71.4
Sed0023726 Sechium edule HOM05D006052 ORTHO05D007319 1.5e-31 139.4 85 75.3
Carub.0002s1643 Capsella rubella HOM05D006052 ORTHO05D007319 1.9e-31 139.0 92 69.6
ECA232G3158 Erigeron canadensis HOM05D006052 ORTHO05D007319 1.9e-31 139.0 90 74.4
Lj3g0026702 Lotus japonicus HOM05D006052 ORTHO05D007319 1.9e-31 139.0 90 73.3
MD17G1187600 Malus domestica HOM05D006052 ORTHO05D007319 1.9e-31 139.0 96 69.8
Ca_11523_v3 Cicer arietinum L. HOM05D007180 ORTHO05D009028 2.5e-31 138.7 96 71.9
ClCG09G001790 Citrullus lanatus HOM05D006052 ORTHO05D007319 2.5e-31 138.7 93 69.9
Eucgr.F03060 Eucalyptus grandis HOM05D006052 ORTHO05D007319 2.5e-31 138.7 94 70.2
Glyma.07G017500 Glycine max HOM05D006052 ORTHO05D007319 2.5e-31 138.7 97 69.1
Glyma.08G202700 Glycine max HOM05D006052 ORTHO05D007319 2.5e-31 138.7 95 71.6
FAN02G3299 Fragaria x ananassa HOM05D006052 ORTHO05D007319 3.3e-31 138.3 91 71.4
Prupe.3G063000 Prunus persica HOM05D006052 ORTHO05D007319 3.3e-31 138.3 99 68.7
Sp5g24870 Schrenkiella parvula HOM05D006052 ORTHO05D007319 3.3e-31 138.3 97 68.0
Zm00001eb295530 Zea mays HOM05D006052 ORTHO05D007319 3.3e-31 138.3 92 69.6
CsaV3_7G033550 Cucumis sativus L. HOM05D006052 ORTHO05D007319 4.3e-31 137.9 79 77.2
Phvul.010G146800 Phaseolus vulgaris HOM05D006052 ORTHO05D007319 4.3e-31 137.9 97 68.0
TPR.G14815 Trifolium pratense HOM05D006052 ORTHO05D007319 5.6e-31 137.5 96 71.9
Zm00001eb002070 Zea mays HOM05D006052 ORTHO05D007319 9.5e-31 136.7 92 68.5
PSO782G5494 Papaver somniferum HOM05D006052 ORTHO05D007319 1.6e-30 136.0 97 68.0
VMungo0331G0139 Vigna mungo HOM05D007180 ORTHO05D009028 1.6e-30 136.0 95 68.4
CARHR062820 Cardamine hirsuta HOM05D006052 ORTHO05D007319 2.1e-30 135.6 93 68.8
HanXRQChr02g0032361 Helianthus annuus HOM05D006052 ORTHO05D007319 2.1e-30 135.6 92 70.7
Rhsim12G0201800 Rhododendron simsii HOM05D006052 ORTHO05D007319 2.8e-30 135.2 118 59.3
SGA_v2.0_scaffold69G23334 Striga asiatica HOM05D006052 ORTHO05D007319 3.6e-30 134.8 89 70.8
Eucgr.E01716 Eucalyptus grandis HOM05D006052 ORTHO05D007319 4.7e-30 134.4 99 65.7
TWI12G0943 Tripterygium wilfordii HOM05D006052 ORTHO05D007319 4.7e-30 134.4 93 66.7
THA.LOC104800715 Tarenaya hassleriana HOM05D006052 ORTHO05D007319 6.1e-30 134.0 87 71.3
VMungo1309G2952 Vigna mungo HOM05D006052 ORTHO05D007319 8.0e-30 133.7 90 68.9
AL1G38650 Arabidopsis lyrata HOM05D006052 ORTHO05D007319 1.4e-29 132.9 79 75.9
RcHm_v2.0_Chr2g0139621 Rosa chinensis HOM05D006052 ORTHO05D007319 2.3e-29 132.1 99 65.7
unitig_748.g8097 Utricularia gibba HOM05D003052 ORTHO05D007319 4.0e-29 131.3 82 74.4
BraA07t30774Z Brassica rapa HOM05D006052 ORTHO05D007319 5.2e-29 131.0 86 73.3
A07p31390 Brassica napus HOM05D006052 ORTHO05D007319 1.5e-28 129.4 84 73.8
Lalb_Chr01g0013101 Lupinus albus HOM05D006052 ORTHO05D007319 1.5e-28 129.4 79 74.7
Lalb_Chr01g0013121 Lupinus albus HOM05D006052 ORTHO05D007319 1.5e-28 129.4 79 74.7
Aa31LG7G8230 Aethionema arabicum HOM05D006052 ORTHO05D007319 3.4e-28 128.3 88 70.5
QL05p021035 Quercus lobata HOM05D006052 ORTHO05D007319 5.7e-28 127.5 120 57.5
BcaC03g15114 Brassica carinata HOM05D006052 ORTHO05D007319 7.5e-28 127.1 85 70.6
BolC2t08748H Brassica oleracea HOM05D006052 ORTHO05D007319 7.5e-28 127.1 85 70.6
QL05p020889 Quercus lobata HOM05D006052 ORTHO05D007319 7.0e-26 120.6 68 83.8
C02p26750 Brassica napus HOM05D006052 ORTHO05D007319 1.2e-25 119.8 92 64.1
SMO271G0187 Selaginella moellendorffii HOM05D006052 ORTHO05D007319 1.3e-24 116.3 79 63.3
Mapoly0075s0024 Marchantia polymorpha HOM05D006052 ORTHO05D007319 3.0e-24 115.2 83 66.3
Psat4g197560 Pisum sativum HOM05D006052 ORTHO05D007319 7.3e-23 110.5 66 74.2
arahy.Tifrunner.gnm1.ann1.Q44M57 Arachis hypogaea HOM05D006052 ORTHO05D007319 1.6e-22 109.4 66 74.2
SalBow6G3458 Salvia bowleyana HOM05D006052 ORTHO05D007319 2.1e-22 109.0 63 76.2
AagrBONN_evm.TU.Sc2ySwM_344.4288 Anthoceros agrestis HOM05D006052 ORTHO05D007319 1.8e-21 105.9 79 58.2
Oeu063940.2 Olea europaea HOM05D004680 ORTHO05D007319 1.8e-21 105.9 65 70.8
Pp3c14_6840 Physcomitrium patens HOM05D006052 ORTHO05D007319 3.1e-21 105.1 76 61.8
SEGI_14426 Sequoiadendron giganteum HOM05D006052 ORTHO05D007319 5.2e-21 104.4 72 66.7
Atru.ctg114.13 Acer truncatum HOM05D006052 ORTHO05D007319 1.2e-20 103.2 66 68.2
CBR_g27938 Chara braunii HOM05D006052 ORTHO05D007319 5.8e-20 100.9 94 53.2
Nitab4.5_0001315g0290 Nicotiana tabacum HOM05D006052 ORTHO05D007319 7.5e-20 100.5 78 64.1
MD09G1206900 Malus domestica HOM05D006052 ORTHO05D007319 1.1e-18 96.7 91 54.9
RcHm_v2.0_Chr5g0082611 Rosa chinensis HOM05D006052 ORTHO05D007319 1.4e-18 96.3 63 66.7
Nitab4.5_0008606g0020 Nicotiana tabacum HOM05D006052 ORTHO05D007319 2.4e-18 95.5 52 76.9
BraA02t06670Z Brassica rapa HOM05D006052 ORTHO05D007319 5.4e-18 94.4 63 68.3
MELO3C024266.2 Cucumis melo HOM05D006052 ORTHO05D007319 1.2e-17 93.2 52 78.8
RcHm_v2.0_Chr5g0082321 Rosa chinensis HOM05D006052 ORTHO05D007319 1.6e-17 92.8 63 65.1
A02p16100 Brassica napus HOM05D006052 ORTHO05D007319 3.5e-17 91.7 64 65.6
PRCOL_00001792 Prasinoderma coloniale HOM05D006052 ORTHO05D007319 4.6e-17 91.3 79 55.7
RcHm_v2.0_Chr4g0404221 Rosa chinensis HOM05D006052 ORTHO05D007319 4.6e-17 91.3 62 66.1
Lsat_1_v5_gn_1_34740 Lactuca sativa HOM05D006052 ORTHO05D007319 1.7e-16 89.4 70 67.1
MCO15G075 Micromonas commoda HOM05D006052 ORTHO05D007319 5.6e-15 84.3 83 48.2
Manes.11G036000 Manihot esculenta HOM05D006052 ORTHO05D007319 7.3e-15 84.0 67 58.2
vmacro16174 Vaccinium macrocarpon HOM05D006052 ORTHO05D007319 1.2e-14 83.2 59 67.8
Sp2g00570 Schrenkiella parvula HOM05D006052 ORTHO05D007319 1.6e-14 82.8 64 64.1
Cre10.g454550 Chlamydomonas reinhardtii HOM05D006052 ORTHO05D007319 6.2e-14 80.9 73 50.7
Nn2g12137 Nelumbo nucifera HOM05D006052 ORTHO05D007319 1.7e-11 72.8 49 71.4
Cfa026674 Carpinus fangiana HOM05D006052 ORTHO05D007319 4.9e-11 71.2 80 46.2
TPR.G20406 Trifolium pratense HOM05D006052 ORTHO05D007319 4.6e-09 64.7 33 87.9
CBR_g29697 Chara braunii HOM05D035488 ORTHO05D007319 9.5e-07 57.0 53 49.1


User provided reference genes

Program Settings