Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01016980001 Vitis vinifera HOM05D002451 ORTHO05D005601 0.0e+00 2233.4 1147 100.0
Dinv37977 Davidia involucrata HOM05D002451 ORTHO05D005601 0.0e+00 1582.4 1161 70.5
TAR636G2911 Trochodendron aralioides HOM05D002451 ORTHO05D005601 0.0e+00 1485.7 1150 67.5
QL05p020031 Quercus lobata HOM05D002451 ORTHO05D005601 0.0e+00 1476.1 1231 63.7
CiPaw.01G231400 Carya illinoinensis HOM05D002451 ORTHO05D005601 0.0e+00 1453.0 1161 65.8
Cfa003647 Carpinus fangiana HOM05D002451 ORTHO05D005601 0.0e+00 1428.3 1150 65.3
Nn8g39071 Nelumbo nucifera HOM05D002451 ORTHO05D005601 0.0e+00 1426.8 1162 62.9
Ciclev10024743m.g Citrus clementina HOM05D002451 ORTHO05D005601 0.0e+00 1406.7 1160 64.3
Haze_15848 Corylus avellana HOM05D002451 ORTHO05D005601 0.0e+00 1402.9 1168 64.3
Atru.chr1.3524 Acer truncatum HOM05D002451 ORTHO05D005601 0.0e+00 1394.4 1153 64.8
Potri.003G048800 Populus trichocarpa HOM05D002451 ORTHO05D005601 0.0e+00 1384.4 1150 63.4
Prupe.3G059000 Prunus persica HOM05D002451 ORTHO05D005601 0.0e+00 1380.2 1164 62.5
Manes.11G033500 Manihot esculenta HOM05D002451 ORTHO05D005601 0.0e+00 1359.7 1163 62.4
Lj9C513G3 Lonicera japonica HOM05D002451 ORTHO05D005601 0.0e+00 1350.9 1147 61.5
Duzib192G0210 Durio zibethinus HOM05D002451 ORTHO05D005601 0.0e+00 1349.0 1160 62.7
Thecc.06G100100 Theobroma cacao HOM05D002451 ORTHO05D005601 0.0e+00 1345.9 1163 61.8
MD09G1202800 Malus domestica HOM05D002451 ORTHO05D005601 0.0e+00 1343.9 1153 61.8
TWI12G0408 Tripterygium wilfordii HOM05D002451 ORTHO05D005601 0.0e+00 1338.2 1156 61.2
Rhsim08G0227600 Rhododendron simsii HOM05D002451 ORTHO05D005601 0.0e+00 1335.9 1218 59.0
Gorai.010G230600 Gossypium raimondii HOM05D002451 ORTHO05D005601 0.0e+00 1333.2 1164 60.5
Gohir.D06G197800 Gossypium hirsutum HOM05D002451 ORTHO05D005601 0.0e+00 1330.1 1164 60.4
Actinidia32098 Actinidia chinensis HOM05D002451 ORTHO05D005601 0.0e+00 1325.5 1161 61.8
RcHm_v2.0_Chr2g0140541 Rosa chinensis HOM05D002451 ORTHO05D005601 0.0e+00 1310.8 1151 60.0
CANSAT56G2471 Cannabis sativa HOM05D002451 ORTHO05D005601 0.0e+00 1310.4 1146 61.0
CsaV3_7G035270 Cucumis sativus L. HOM05D002451 ORTHO05D005601 0.0e+00 1278.8 1163 57.8
COL.COLO4_30513 Corchorus olitorius HOM05D002451 ORTHO05D005601 0.0e+00 1275.8 1147 59.6
TPR.G6596 Trifolium pratense HOM05D002451 ORTHO05D005601 0.0e+00 1271.9 1164 58.2
FAN05G4332 Fragaria x ananassa HOM05D002451 ORTHO05D005601 0.0e+00 1271.1 1151 59.0
Phvul.005G166100 Phaseolus vulgaris HOM05D002451 ORTHO05D005601 0.0e+00 1271.1 1158 58.5
Glyma.13G354600 Glycine max HOM05D002451 ORTHO05D005601 0.0e+00 1266.9 1156 59.8
Sed0021872 Sechium edule HOM05D002451 ORTHO05D005601 0.0e+00 1262.7 1161 57.4
Aqoxy7G01406 Aquilegia oxysepala HOM05D002451 ORTHO05D005601 0.0e+00 1262.3 1150 58.0
Ca_01165_v3 Cicer arietinum L. HOM05D002451 ORTHO05D005601 0.0e+00 1254.6 1161 58.5
Lalb_Chr14g0373021 Lupinus albus HOM05D002451 ORTHO05D005601 0.0e+00 1244.6 1147 58.1
FAN02G1073 Fragaria x ananassa HOM05D002451 ORTHO05D005601 0.0e+00 1234.9 1136 58.3
Glyma.15G019600 Glycine max HOM05D002451 ORTHO05D005601 0.0e+00 1234.9 1152 57.9
PSO063G3373 Papaver somniferum HOM05D002451 ORTHO05D005601 0.0e+00 1226.5 1156 56.5
Cc04_g02550 Coffea canephora HOM05D002451 ORTHO05D005601 0.0e+00 1223.8 1160 54.9
Lj1g0009957 Lotus japonicus HOM05D002451 ORTHO05D005601 0.0e+00 1223.4 1160 57.4
PSO832G2466 Papaver somniferum HOM05D002451 ORTHO05D005601 0.0e+00 1220.7 1155 56.8
Medtr2g100870 Medicago truncatula HOM05D002451 ORTHO05D005601 0.0e+00 1219.9 1162 56.7
Solyc03g121030.2 Solanum lycopersicum HOM05D002451 ORTHO05D005601 0.0e+00 1218.8 1152 55.9
Gohir.A06G189400 Gossypium hirsutum HOM05D002451 ORTHO05D005601 0.0e+00 1216.8 1103 58.9
Sopen03g039860 Solanum pennellii HOM05D002451 ORTHO05D005601 0.0e+00 1216.4 1152 55.9
MELO3C024437.2 Cucumis melo HOM05D002451 ORTHO05D005601 0.0e+00 1214.9 1120 57.4
MBI04_g20307_MAGBIO Magnolia biondii HOM05D002451 ORTHO05D005601 0.0e+00 1213.0 1236 53.6
Medtr5g085950 Medicago truncatula HOM05D002451 ORTHO05D005601 0.0e+00 1198.3 1161 56.1
PGR102G3176 Punica granatum HOM05D002451 ORTHO05D005601 0.0e+00 1192.6 1148 53.6
Eucgr.F03079 Eucalyptus grandis HOM05D002451 ORTHO05D005601 0.0e+00 1191.4 1104 56.0
TWI75G1452 Tripterygium wilfordii HOM05D002451 ORTHO05D005601 0.0e+00 1185.6 1153 55.9
Sc10g0007590 Simmondsia chinensis HOM05D002451 ORTHO05D005601 0.0e+00 1185.2 1161 55.3
FvH4_6g32400 Fragaria vesca HOM05D002451 ORTHO05D005601 0.0e+00 1176.8 1066 59.0
vmacro18852 Vaccinium macrocarpon HOM05D002451 ORTHO05D005601 0.0e+00 1169.8 1009 61.2
AUR62031915 Chenopodium quinoa HOM05D002451 ORTHO05D005601 0.0e+00 1169.1 1154 53.9
arahy.Tifrunner.gnm1.ann1.T566S8 Arachis hypogaea HOM05D002451 ORTHO05D005601 0.0e+00 1162.5 1138 55.9
arahy.Tifrunner.gnm1.ann1.65X03I Arachis hypogaea HOM05D002451 ORTHO05D005601 0.0e+00 1159.8 1139 55.3
AUR62022206 Chenopodium quinoa HOM05D002451 ORTHO05D005601 0.0e+00 1139.8 1139 54.0
THA.LOC104809828 Tarenaya hassleriana HOM05D002451 ORTHO05D005601 0.0e+00 1137.5 1149 54.0
MSTRG.11027 Avicennia marina HOM05D002451 ORTHO05D005601 0.0e+00 1125.9 1156 53.4
Migut.I00897 Erythranthe guttata HOM05D002451 ORTHO05D005601 0.0e+00 1122.1 1165 53.0
AL8G20730 Arabidopsis lyrata HOM05D002451 ORTHO05D005601 0.0e+00 1104.4 1147 51.4
AT5G48120 Arabidopsis thaliana HOM05D002451 ORTHO05D005601 0.0e+00 1099.7 1150 51.6
Carub.0008s0769 Capsella rubella HOM05D002451 ORTHO05D005601 0.0e+00 1097.4 1145 51.2
Psat5g295800 Pisum sativum HOM05D002451 ORTHO05D005601 0.0e+00 1091.3 1111 55.0
Thhalv10003552m.g Eutrema salsugineum HOM05D002451 ORTHO05D005601 0.0e+00 1090.9 1132 52.1
Sp2g18530 Schrenkiella parvula HOM05D002451 ORTHO05D005601 0.0e+00 1090.1 1147 51.4
Sabra03G0029300 Salix brachista HOM05D002451 ORTHO05D005601 0.0e+00 1078.2 1097 54.1
BraA02t08709Z Brassica rapa HOM05D002451 ORTHO05D005601 0.0e+00 1075.8 1147 50.7
BcaB07g30001 Brassica carinata HOM05D002451 ORTHO05D005601 9.4e-311 1070.5 1135 50.9
BcaC03g17628 Brassica carinata HOM05D002451 ORTHO05D005601 1.6e-310 1069.7 1147 50.5
FAN09G4229 Fragaria x ananassa HOM05D002451 ORTHO05D005601 4.6e-310 1068.1 1043 56.5
C02p56250 Brassica napus HOM05D002451 ORTHO05D005601 3.8e-309 1065.1 1148 50.3
BolC2t11683H Brassica oleracea HOM05D002451 ORTHO05D005601 3.8e-309 1065.1 1148 50.4
A02p37220 Brassica napus HOM05D002451 ORTHO05D005601 5.6e-308 1061.2 1147 50.7
Aa31LG11G5160 Aethionema arabicum HOM05D002451 ORTHO05D005601 4.7e-307 1058.1 1141 50.0
ATR0705G185 Amborella trichopoda HOM05D002451 ORTHO05D005601 5.2e-306 1054.7 1174 49.7
Lsat_1_v5_gn_4_97440 Lactuca sativa HOM05D002451 ORTHO05D005601 8.9e-306 1053.9 1141 51.0
Hund07601 Selenicereus undatus HOM05D002451 ORTHO05D005601 1.2e-305 1053.5 1154 50.5
ECA232G2699 Erigeron canadensis HOM05D002451 ORTHO05D005601 2.7e-302 1042.3 1160 50.0
HanXRQChr09g0276251 Helianthus annuus HOM05D002451 ORTHO05D005601 4.3e-300 1035.0 1141 50.3
Oeu017119.1 Olea europaea HOM05D002451 ORTHO05D005601 2.1e-299 1032.7 1074 52.0
CARHR259290 Cardamine hirsuta HOM05D002451 ORTHO05D005601 2.8e-299 1032.3 1146 49.5
CAN.G1143.14 Capsicum annuum HOM05D002451 ORTHO05D005601 2.3e-298 1029.2 1040 52.7
Nitab4.5_0006902g0020 Nicotiana tabacum HOM05D002451 ORTHO05D005601 7.8e-294 1014.2 1143 49.9
FAN14G4820 Fragaria x ananassa HOM05D002451 ORTHO05D005601 2.5e-292 1009.2 953 56.9
Ah.01g022090 Amaranthus hybridus HOM05D002451 ORTHO05D005601 2.5e-284 982.6 1151 48.0
EL10Ac9g21204 Beta vulgaris HOM05D002451 ORTHO05D005601 9.9e-281 970.7 1078 50.3
DCAR_023080 Daucus carota HOM05D002451 ORTHO05D005601 2.4e-271 939.5 1146 48.3
Nitab4.5_0006467g0020 Nicotiana tabacum HOM05D002451 ORTHO05D005601 1.2e-270 937.2 1143 47.2
HPP92_007690 Vanilla planifolia HOM05D002451 ORTHO05D005601 4.8e-267 925.2 1164 45.1
ClCG09G000210 Citrullus lanatus HOM05D002451 ORTHO05D005601 1.3e-264 917.1 937 53.7
SGA_v2.0_scaffold66G22528 Striga asiatica HOM05D002451 ORTHO05D005601 7.9e-262 907.9 1156 46.0
Zm00001eb301230 Zea mays HOM05D002451 ORTHO05D005601 1.3e-251 874.0 1153 43.5
Peaxi162Scf00038g01032 Petunia axillaris HOM05D002451 ORTHO05D005601 1.9e-247 860.1 939 49.1
SEGI_26537 Sequoiadendron giganteum HOM05D002451 ORTHO05D005601 2.7e-185 653.7 1058 38.7
Pp3c9_4950 Physcomitrium patens HOM05D002451 ORTHO05D005601 1.5e-156 558.1 1194 32.9
TAR624G0206 Trochodendron aralioides HOM05D002451 ORTHO05D005601 6.6e-152 542.7 438 65.1
Os07g0177100 Oryza sativa ssp. japonica HOM05D002451 ORTHO05D005601 1.5e-151 541.6 657 46.3
CSS0036196 Camellia sinensis var. sinensis HOM05D002451 ORTHO05D005601 5.1e-144 516.5 443 62.8
Mapoly0036s0119 Marchantia polymorpha HOM05D002451 ORTHO05D005601 3.4e-140 503.8 1197 30.9
Aa31sc1931G10 Aethionema arabicum HOM05D002451 ORTHO05D005601 6.0e-137 493.0 527 49.3
unitig_88.g27601 Utricularia gibba HOM05D002451 ORTHO05D005601 2.6e-132 477.6 713 40.3
Cpa.g.sc25.8 Carica papaya HOM05D002451 ORTHO05D005601 5.7e-127 459.9 512 50.8
CSS0044368 Camellia sinensis var. sinensis HOM05D002451 ORTHO05D005601 7.2e-122 443.0 337 65.9
SMO111G0185 Selaginella moellendorffii HOM05D002451 ORTHO05D005601 2.5e-114 417.9 1141 28.9
Aa31LG11G5130 Aethionema arabicum HOM05D002451 ORTHO05D005601 3.7e-110 404.1 443 49.7
CDE05G1834 Ceratophyllum demersum HOM05D002451 ORTHO05D005601 1.0e-104 386.0 436 49.8
ClCG09G000220 Citrullus lanatus HOM05D002451 ORTHO05D005601 8.8e-96 356.3 236 73.3
CDE05G2530 Ceratophyllum demersum HOM05D002451 ORTHO05D005601 1.8e-77 295.4 232 64.2
Cpa.g.sc25.5 Carica papaya HOM05D002451 ORTHO05D005601 5.4e-77 293.9 268 59.3
CBR_g26190 Chara braunii HOM05D002451 ORTHO05D005601 1.1e-74 286.2 1293 25.4
TAR624G0246 Trochodendron aralioides HOM05D002451 ORTHO05D005601 4.1e-69 267.7 201 70.1
Cpa.g.sc25.4 Carica papaya HOM05D002451 ORTHO05D005601 3.0e-67 261.5 155 74.2
Aa31LG9G10330 Aethionema arabicum HOM05D002451 ORTHO05D005601 1.9e-66 258.8 322 46.0
QL05p020001 Quercus lobata HOM05D002451 ORTHO05D005601 1.9e-66 258.8 315 50.2
TAR624G0921 Trochodendron aralioides HOM05D002451 ORTHO05D005601 2.3e-64 251.9 226 60.2
Sc17g0002930 Simmondsia chinensis HOM05D002451 ORTHO05D005601 2.8e-57 228.4 180 63.9
Sabra03G0029200 Salix brachista HOM05D002451 ORTHO05D005601 6.8e-48 197.2 186 57.5
HPP92_007773 Vanilla planifolia HOM05D002451 ORTHO05D005601 2.9e-38 165.2 159 50.9
TAR624G0431 Trochodendron aralioides HOM05D002451 ORTHO05D005601 2.3e-35 155.6 119 67.2
MCO12G207 Micromonas commoda HOM05D002451 ORTHO05D005601 9.6e-34 150.2 1281 21.5
Psat3g036640 Pisum sativum HOM05D002451 ORTHO05D005601 4.8e-33 147.9 187 43.9
unitig_88.g27602 Utricularia gibba HOM05D002451 ORTHO05D005601 5.3e-32 144.4 132 56.8
CSS0023144 Camellia sinensis var. sinensis HOM05D002451 ORTHO05D005601 9.9e-31 140.2 126 60.3
A06p15140 Brassica napus HOM05D002451 ORTHO05D020166 3.8e-30 138.3 152 50.0
BraA06t24629Z Brassica rapa HOM05D002451 ORTHO05D020166 3.8e-30 138.3 152 50.0
EL10Ac9g21205 Beta vulgaris HOM05D002451 ORTHO05D005601 5.4e-29 134.4 180 45.6
HPP92_007804 Vanilla planifolia HOM05D002451 ORTHO05D005601 2.1e-28 132.5 178 42.1
Cpa.g.sc25.3 Carica papaya HOM05D002451 ORTHO05D005601 2.7e-28 132.1 96 71.9
SEGI_23779 Sequoiadendron giganteum HOM05D002451 ORTHO05D005601 1.0e-27 130.2 119 57.1
Psat4g171400 Pisum sativum HOM05D002451 ORTHO05D005601 3.9e-27 128.3 138 50.0
Aa31LG9G10320 Aethionema arabicum HOM05D002451 ORTHO05D005601 1.9e-26 125.9 123 50.4
Zm00001eb320400 Zea mays HOM05D002451 ORTHO05D005601 3.7e-25 121.7 275 32.7
CSS0026050 Camellia sinensis var. sinensis HOM05D002451 ORTHO05D005601 3.1e-24 118.6 96 68.8
CSS0028178 Camellia sinensis var. sinensis HOM05D002451 ORTHO05D005601 3.1e-24 118.6 96 68.8
SHI11092 Sapria himalayana HOM05D002451 ORTHO05D005601 1.2e-23 116.7 135 48.1
Lj1g0017121 Lotus japonicus HOM05D002451 ORTHO05D005601 2.0e-23 115.9 93 66.7
SHI11089 Sapria himalayana HOM05D002451 ORTHO05D005601 1.9e-21 109.4 75 68.0
SHI11090 Sapria himalayana HOM05D002451 ORTHO05D005601 9.3e-21 107.1 63 66.7
Cre13.g605050 Chlamydomonas reinhardtii HOM05D002451 ORTHO05D005601 1.3e-17 96.7 151 37.1
TPR.G18859 Trifolium pratense HOM05D002451 ORTHO05D005601 4.8e-17 94.7 103 53.4
Peaxi162Scf00038g01031 Petunia axillaris HOM05D002451 ORTHO05D005601 1.2e-15 90.1 55 80.0
TPR.G18835 Trifolium pratense HOM05D002451 ORTHO05D005601 5.8e-15 87.8 57 70.2
Zm00001eb029900 Zea mays HOM05D002451 ORTHO05D005601 1.7e-14 86.3 90 48.9
SGA_v2.0_scaffold123G33404 Striga asiatica HOM05D002451 ORTHO05D005601 8.4e-14 84.0 92 42.4
vmacro17797 Vaccinium macrocarpon HOM05D000003 ORTHO05D000007 5.1e-11 74.7 76 55.3
Hund28869 Selenicereus undatus HOM05D002451 ORTHO05D005601 5.7e-10 71.2 64 60.9
Hund28828 Selenicereus undatus HOM05D002451 ORTHO05D005601 1.6e-09 69.7 68 57.4
TPR.G18837 Trifolium pratense HOM05D002451 ORTHO05D005601 1.6e-09 69.7 73 54.8
Medtr5g055460 Medicago truncatula HOM05D002451 ORTHO05D005601 2.2e-09 69.3 48 66.7


User provided reference genes

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