Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01016897001 Vitis vinifera HOM05D005721 ORTHO05D006758 0.0e+00 1310.8 661 100.0
TAR383G0756 Trochodendron aralioides HOM05D005721 ORTHO05D006758 4.5e-312 1073.5 661 80.3
Hma1.2p1_0388F.1_g142110 Hydrangea macrophylla HOM05D005721 ORTHO05D006758 8.2e-304 1046.6 648 79.3
Haze_15914 Corylus avellana HOM05D005721 ORTHO05D006758 6.9e-303 1043.5 661 77.2
Dinv37937 Davidia involucrata HOM05D005721 ORTHO05D006758 4.2e-300 1034.2 662 77.5
CSS0018154 Camellia sinensis var. sinensis HOM05D005721 ORTHO05D006758 3.0e-298 1028.1 652 77.6
QL05p015721 Quercus lobata HOM05D005721 ORTHO05D006758 3.0e-298 1028.1 660 76.8
Thecc.06G106800 Theobroma cacao HOM05D005721 ORTHO05D006758 5.1e-298 1027.3 655 78.2
CiPaw.01G227700 Carya illinoinensis HOM05D005721 ORTHO05D006758 1.1e-297 1026.2 660 75.9
QL05p015579 Quercus lobata HOM05D005721 ORTHO05D006758 5.7e-297 1023.8 660 76.7
MD17G1178100 Malus domestica HOM05D005721 ORTHO05D006758 8.2e-296 1020.0 661 77.0
Duzib235G0012 Durio zibethinus HOM05D005721 ORTHO05D006758 1.4e-295 1019.2 651 77.6
CANSAT56G2950 Cannabis sativa HOM05D005721 ORTHO05D006758 2.0e-294 1015.4 650 76.0
Gorai.011G068100 Gossypium raimondii HOM05D005721 ORTHO05D006758 4.5e-294 1014.2 655 76.0
Gohir.A10G062400 Gossypium hirsutum HOM05D005721 ORTHO05D006758 7.7e-294 1013.4 655 75.7
Actinidia21738 Actinidia chinensis HOM05D005721 ORTHO05D006758 2.5e-292 1008.4 655 75.9
Prupe.3G053200 Prunus persica HOM05D005721 ORTHO05D006758 9.4e-292 1006.5 661 75.6
Eucgr.F03100 Eucalyptus grandis HOM05D005721 ORTHO05D006758 1.6e-291 1005.7 662 75.4
Nn6g35400 Nelumbo nucifera HOM05D005721 ORTHO05D006758 3.0e-290 1001.5 650 76.3
Duzib192G0301 Durio zibethinus HOM05D005721 ORTHO05D006758 3.9e-290 1001.1 650 77.1
RcHm_v2.0_Chr2g0142311 Rosa chinensis HOM05D005721 ORTHO05D006758 3.9e-290 1001.1 661 74.6
Lj3g0007444 Lotus japonicus HOM05D005721 ORTHO05D006758 6.7e-290 1000.3 650 75.8
MD09G1196700 Malus domestica HOM05D005721 ORTHO05D006758 2.0e-289 998.8 661 75.5
vmacro18826 Vaccinium macrocarpon HOM05D005721 ORTHO05D006758 9.7e-289 996.5 652 76.4
FvH4_6g32880 Fragaria vesca HOM05D005721 ORTHO05D006758 2.8e-288 995.0 662 74.5
FAN02G2457 Fragaria x ananassa HOM05D005721 ORTHO05D006758 2.4e-287 991.9 662 74.2
FAN05G3306 Fragaria x ananassa HOM05D005721 ORTHO05D006758 9.1e-287 989.9 662 74.5
PGR102G0208 Punica granatum HOM05D005721 ORTHO05D006758 2.6e-286 988.4 660 76.2
Medtr8g015550 Medicago truncatula HOM05D005721 ORTHO05D006758 2.9e-285 984.9 650 74.2
Glyma.07G013000 Glycine max HOM05D005721 ORTHO05D006758 5.0e-285 984.2 657 75.0
Manes.11G029200 Manihot esculenta HOM05D005721 ORTHO05D006758 1.4e-284 982.6 653 72.7
Glyma.08G196700 Glycine max HOM05D005721 ORTHO05D006758 1.9e-284 982.2 650 75.2
PSO210G3246 Papaver somniferum HOM05D005721 ORTHO05D006758 1.9e-284 982.2 664 74.1
Psat4g194600 Pisum sativum HOM05D005721 ORTHO05D006758 1.9e-284 982.2 650 74.5
Atru.chr1.3621 Acer truncatum HOM05D005721 ORTHO05D006758 2.5e-284 981.9 653 73.2
Aqoxy7G03983 Aquilegia oxysepala HOM05D005721 ORTHO05D006758 3.2e-284 981.5 650 74.6
PSO210G5250 Papaver somniferum HOM05D005721 ORTHO05D006758 9.4e-284 979.9 653 74.7
Dinv30404 Davidia involucrata HOM05D005721 ORTHO05D006758 2.1e-283 978.8 619 78.4
CsaV3_7G034930 Cucumis sativus L. HOM05D005721 ORTHO05D006758 1.4e-282 976.1 656 73.8
Ciclev10025098m.g Citrus clementina HOM05D005721 ORTHO05D006758 3.9e-282 974.5 648 73.6
Lalb_Chr01g0013341 Lupinus albus HOM05D005721 ORTHO05D006758 3.7e-280 968.0 645 73.3
Ca_23291_v3 Cicer arietinum L. HOM05D005721 ORTHO05D006758 4.2e-276 954.5 650 72.8
Sed0006169 Sechium edule HOM05D005721 ORTHO05D006758 9.4e-276 953.4 648 72.1
Nn8g38942 Nelumbo nucifera HOM05D005721 ORTHO05D006758 3.6e-275 951.4 652 72.4
Lsat_1_v5_gn_4_96061 Lactuca sativa HOM05D005721 ORTHO05D006758 4.7e-275 951.0 650 72.2
Phvul.010G142500 Phaseolus vulgaris HOM05D005721 ORTHO05D006758 1.0e-274 949.9 650 73.1
VMungo0331G1465 Vigna mungo HOM05D005721 ORTHO05D006758 3.9e-274 948.0 650 72.6
Sopen03g040160 Solanum pennellii HOM05D005721 ORTHO05D006758 2.0e-273 945.7 651 73.0
Solyc03g121350.3 Solanum lycopersicum HOM05D005721 ORTHO05D006758 4.4e-273 944.5 651 72.8
Nitab4.5_0004848g0040 Nicotiana tabacum HOM05D005721 ORTHO05D006758 3.7e-272 941.4 656 71.8
MBI01_g16575_MAGBIO Magnolia biondii HOM05D005721 ORTHO05D006758 5.3e-271 937.6 644 72.7
ECA232G2751 Erigeron canadensis HOM05D005721 ORTHO05D006758 1.2e-270 936.4 661 70.5
CAN.G1668.6 Capsicum annuum HOM05D005721 ORTHO05D006758 1.6e-270 936.0 658 71.6
Hund07658 Selenicereus undatus HOM05D005721 ORTHO05D006758 6.5e-269 930.6 648 72.1
Cc04_g02230 Coffea canephora HOM05D005721 ORTHO05D006758 1.2e-267 926.4 646 70.0
Gohir.D10G064100 Gossypium hirsutum HOM05D005721 ORTHO05D006758 3.6e-267 924.9 583 77.7
C06p47250 Brassica napus HOM05D005721 ORTHO05D006758 4.7e-267 924.5 648 69.6
BolC6t39764H Brassica oleracea HOM05D005721 ORTHO05D006758 4.7e-267 924.5 648 69.6
THA.LOC104813944 Tarenaya hassleriana HOM05D005721 ORTHO05D006758 1.0e-266 923.3 651 69.3
A07p39040 Brassica napus HOM05D005721 ORTHO05D006758 2.3e-266 922.2 648 69.4
Thhalv10018233m.g Eutrema salsugineum HOM05D005721 ORTHO05D006758 4.4e-265 917.9 648 69.4
BraA07t31454Z Brassica rapa HOM05D005721 ORTHO05D006758 1.7e-264 916.0 659 68.4
AL2G32770 Arabidopsis lyrata HOM05D005721 ORTHO05D006758 3.7e-264 914.8 648 69.3
AT1G73020 Arabidopsis thaliana HOM05D005721 ORTHO05D006758 6.3e-264 914.1 648 69.1
Carub.0002s1978 Capsella rubella HOM05D005721 ORTHO05D006758 4.1e-263 911.4 648 69.0
ClCG09G000510 Citrullus lanatus HOM05D005721 ORTHO05D006758 9.1e-263 910.2 656 70.0
Sp5g27980 Schrenkiella parvula HOM05D005721 ORTHO05D006758 4.5e-262 907.9 643 68.9
Aa31LG4G3310 Aethionema arabicum HOM05D005721 ORTHO05D006758 2.9e-261 905.2 648 68.7
CARHR065990 Cardamine hirsuta HOM05D005721 ORTHO05D006758 1.1e-260 903.3 648 68.7
Nitab4.5_0006071g0030 Nicotiana tabacum HOM05D005721 ORTHO05D006758 3.2e-260 901.7 653 70.8
Lj9A516G96 Lonicera japonica HOM05D005721 ORTHO05D006758 5.5e-260 901.0 671 69.9
TPR.G8754 Trifolium pratense HOM05D005721 ORTHO05D006758 2.1e-259 899.0 615 72.5
SGA_v2.0_scaffold71G23752 Striga asiatica HOM05D005721 ORTHO05D006758 7.0e-255 884.0 652 67.9
Migut.I00999 Erythranthe guttata HOM05D005721 ORTHO05D006758 2.7e-254 882.1 658 67.5
Rhsim08G0230700 Rhododendron simsii HOM05D005721 ORTHO05D006758 5.0e-253 877.9 662 67.5
arahy.Tifrunner.gnm1.ann1.NQY1Y2 Arachis hypogaea HOM05D005721 ORTHO05D006758 1.5e-252 876.3 643 66.4
arahy.Tifrunner.gnm1.ann1.HT12QJ Arachis hypogaea HOM05D005721 ORTHO05D006758 9.5e-252 873.6 643 66.3
Peaxi162Scf00038g01247 Petunia axillaris HOM05D005721 ORTHO05D006758 1.8e-250 869.4 654 67.6
BolC6t38551H Brassica oleracea HOM05D005721 ORTHO05D006758 5.2e-250 867.8 642 66.2
BraA07t30638Z Brassica rapa HOM05D005721 ORTHO05D006758 1.2e-249 866.7 640 66.6
Os01g0706700 Oryza sativa ssp. japonica HOM05D005721 ORTHO05D006758 2.6e-249 865.5 653 68.1
BcaC08g45678 Brassica carinata HOM05D005721 ORTHO05D006758 3.2e-247 858.6 642 65.7
ATR0789G086 Amborella trichopoda HOM05D005721 ORTHO05D006758 7.8e-246 854.0 654 68.2
C06p34410 Brassica napus HOM05D005721 ORTHO05D006758 7.3e-244 847.4 642 65.0
A07p30000 Brassica napus HOM05D005721 ORTHO05D006758 1.8e-242 842.8 643 65.0
EL10Ac9g21136 Beta vulgaris HOM05D005721 ORTHO05D006758 1.7e-240 836.3 679 64.8
Hma1.2p1_0388F.1_g142120 Hydrangea macrophylla HOM05D005721 ORTHO05D006758 1.5e-236 823.2 525 76.6
Oeu001923.1 Olea europaea HOM05D005721 ORTHO05D006758 2.7e-230 802.4 649 65.2
Sc12g0009950 Simmondsia chinensis HOM05D005721 ORTHO05D006758 4.9e-224 781.6 559 68.5
Cpa.g.sc131.22 Carica papaya HOM05D005721 ORTHO05D006758 2.3e-221 772.7 655 61.8
DCAR_031423 Daucus carota HOM05D005721 ORTHO05D006758 2.6e-217 759.2 650 61.5
Zm00001eb361150 Zea mays HOM05D005721 ORTHO05D006758 5.4e-215 751.5 557 70.2
AUR62023905 Chenopodium quinoa HOM05D005721 ORTHO05D006758 4.9e-208 728.4 622 61.6
AUR62038341 Chenopodium quinoa HOM05D005721 ORTHO05D006758 5.4e-207 724.9 684 57.5
Ah.01g004440 Amaranthus hybridus HOM05D005721 ORTHO05D006758 8.1e-203 711.1 655 59.7
unitig_26.g8931 Utricularia gibba HOM05D005721 ORTHO05D006758 1.1e-196 690.6 625 59.2
Zm00001eb155350 Zea mays HOM05D005721 ORTHO05D006758 5.5e-183 645.2 500 65.6
AagrBONN_evm.TU.Sc2ySwM_344.674 Anthoceros agrestis HOM05D005721 ORTHO05D006758 5.5e-175 618.6 641 51.3
MELO3C024406.2 Cucumis melo HOM05D005721 ORTHO05D006758 2.1e-174 616.7 591 56.5
Actinidia32127 Actinidia chinensis HOM05D005721 ORTHO05D006758 1.4e-173 614.0 655 53.1
Oeu026535.1 Olea europaea HOM05D005721 ORTHO05D006758 6.7e-173 611.7 442 68.6
Mapoly0004s0214 Marchantia polymorpha HOM05D005721 ORTHO05D006758 1.3e-168 597.4 645 49.1
Pp3c7_22640 Physcomitrium patens HOM05D005721 ORTHO05D006758 4.0e-157 559.3 647 45.9
SMO147G0374 Selaginella moellendorffii HOM05D005721 ORTHO05D006758 4.0e-157 559.3 654 45.7
CBR_g57226 Chara braunii HOM05D005721 ORTHO05D006758 1.9e-127 460.7 629 41.3
FAN14G1222 Fragaria x ananassa HOM05D005721 ORTHO05D006758 1.2e-92 345.1 227 72.2
arahy.Tifrunner.gnm1.ann1.NL3M0M Arachis hypogaea HOM05D005721 ORTHO05D006758 2.9e-91 340.5 336 53.0
arahy.Tifrunner.gnm1.ann1.402B9T Arachis hypogaea HOM05D005721 ORTHO05D006758 3.7e-54 217.2 284 44.0
FvH4_6g32370 Fragaria vesca HOM05D005721 ORTHO05D006758 6.3e-54 216.5 147 72.8
Oeu023783.1 Olea europaea HOM05D005721 ORTHO05D006758 5.3e-53 213.4 284 46.5
Zm00001eb344360 Zea mays HOM05D005721 ORTHO05D006758 2.2e-51 208.0 121 82.6
Gorai.010G178600 Gossypium raimondii HOM05D005721 ORTHO05D006758 2.0e-44 184.9 157 56.7
QL05p015216 Quercus lobata HOM05D005721 ORTHO05D006758 1.7e-43 181.8 160 56.9
Zm00001eb192810 Zea mays HOM05D005721 ORTHO05D006758 3.8e-43 180.6 110 83.6
arahy.Tifrunner.gnm1.ann1.P3QXG2 Arachis hypogaea HOM05D005721 ORTHO05D006758 4.2e-42 177.2 198 50.5
Glyma.16G086100 Glycine max HOM05D005721 ORTHO05D006758 4.2e-42 177.2 107 81.3
Glyma.16G136400 Glycine max HOM05D005721 ORTHO05D006758 3.6e-41 174.1 107 80.4
Zm00001eb419420 Zea mays HOM05D005721 ORTHO05D006758 3.7e-38 164.1 94 86.2
VMungo0251G0043 Vigna mungo HOM05D005721 ORTHO05D006758 2.4e-37 161.4 166 49.4
Gohir.A06G146950 Gossypium hirsutum HOM05D005721 ORTHO05D006758 7.7e-36 156.4 156 51.3
SEGI_20658 Sequoiadendron giganteum HOM05D005721 ORTHO05D006758 2.2e-35 154.8 340 30.9
Gohir.D06G152751 Gossypium hirsutum HOM05D005721 ORTHO05D006758 5.0e-35 153.7 156 49.4
Glyma.12G149950 Glycine max HOM05D005721 ORTHO05D006758 1.5e-31 142.1 85 81.2
arahy.Tifrunner.gnm1.ann1.F8M988 Arachis hypogaea HOM05D005721 ORTHO05D006758 5.4e-29 133.7 90 71.1
HanXRQChr05g0162621 Helianthus annuus HOM05D005721 ORTHO05D006758 1.6e-28 132.1 83 75.9
HanXRQChr04g0123091 Helianthus annuus HOM05D005721 ORTHO05D006758 1.5e-26 125.6 80 75.0
Glyma.09G112900 Glycine max HOM05D005721 ORTHO05D006758 9.5e-26 122.9 101 61.4
arahy.Tifrunner.gnm1.ann1.SY3941 Arachis hypogaea HOM05D005721 ORTHO05D006758 1.4e-24 119.0 82 70.7
COL.COLO4_30597 Corchorus olitorius HOM05D005721 ORTHO05D006758 1.1e-21 109.4 82 63.4
HanXRQChr05g0131511 Helianthus annuus HOM05D005721 ORTHO05D006758 1.5e-15 89.0 89 57.3
arahy.Tifrunner.gnm1.ann1.EXE9LQ Arachis hypogaea HOM05D005721 ORTHO05D006758 2.0e-15 88.6 56 73.2
HanXRQChr09g0276291 Helianthus annuus HOM05D005721 ORTHO05D006758 2.0e-15 88.6 48 85.4
Glyma.19G071451 Glycine max HOM05D005721 ORTHO05D006758 4.9e-14 84.0 54 75.9
Cfa026500 Carpinus fangiana HOM05D005721 ORTHO05D006758 5.0e-11 73.9 517 21.3
MCO06G118 Micromonas commoda HOM05D005721 ORTHO05D006758 1.9e-10 72.0 204 27.9
SMO117G0241 Selaginella moellendorffii HOM05D067901 ORTHO05D006758 1.3e-06 59.3 195 27.2


User provided reference genes

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