Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01016719001 Vitis vinifera HOM05D004368 ORTHO05D004990 4.9e-188 661.0 333 100.0
TAR626G1097 Trochodendron aralioides HOM05D004368 ORTHO05D004990 6.7e-113 411.4 338 66.6
Actinidia21803 Actinidia chinensis HOM05D004368 ORTHO05D004990 5.9e-109 398.3 340 65.0
TAR468G0014 Trochodendron aralioides HOM05D004368 ORTHO05D004990 7.7e-109 397.9 304 69.4
Actinidia32205 Actinidia chinensis HOM05D004368 ORTHO05D004990 1.9e-107 393.3 338 63.3
Potri.001G166000 Populus trichocarpa HOM05D004368 ORTHO05D004990 4.7e-106 388.7 337 65.9
Duzib235G0527 Durio zibethinus HOM05D004368 ORTHO05D004990 7.9e-106 387.9 334 64.4
Ciclev10026090m.g Citrus clementina HOM05D004368 ORTHO05D004990 8.8e-105 384.4 335 65.4
CSS0030612 Camellia sinensis var. sinensis HOM05D004368 ORTHO05D004990 2.0e-104 383.3 310 67.7
Eucgr.F02457 Eucalyptus grandis HOM05D004368 ORTHO05D004990 2.8e-103 379.4 334 62.3
Duzib160G0466 Durio zibethinus HOM05D004368 ORTHO05D004990 1.4e-102 377.1 314 65.9
Thecc.06G124200 Theobroma cacao HOM05D004368 ORTHO05D004990 1.4e-102 377.1 339 63.7
Hma1.2p1_0311F.1_g121230 Hydrangea macrophylla HOM05D004368 ORTHO05D004990 4.1e-102 375.6 295 68.8
Hma1.2p1_0414F.1_g147650 Hydrangea macrophylla HOM05D004368 ORTHO05D004990 1.2e-101 374.0 310 64.2
Nn8g38578 Nelumbo nucifera HOM05D004368 ORTHO05D004990 2.6e-101 372.9 291 69.4
TWI23G0003 Tripterygium wilfordii HOM05D004368 ORTHO05D004990 2.6e-101 372.9 338 63.9
Manes.11G016500 Manihot esculenta HOM05D004368 ORTHO05D004990 1.3e-100 370.5 229 84.3
COL.COLO4_30792 Corchorus olitorius HOM05D004368 ORTHO05D004990 2.2e-100 369.8 334 62.9
CiPaw.01G216100 Carya illinoinensis HOM05D004368 ORTHO05D004990 3.2e-99 365.9 336 62.8
Rhsim08G0241200 Rhododendron simsii HOM05D004368 ORTHO05D004990 4.2e-99 365.5 242 77.7
Lj9C535T4 Lonicera japonica HOM05D004368 ORTHO05D004990 3.6e-98 362.5 264 71.2
vmacro06407 Vaccinium macrocarpon HOM05D004368 ORTHO05D004990 6.1e-98 361.7 338 59.2
Gohir.A06G193900 Gossypium hirsutum HOM05D004368 ORTHO05D004990 8.0e-98 361.3 336 59.8
Lj5A32G57 Lonicera japonica HOM05D004368 ORTHO05D004990 1.0e-97 360.9 269 70.3
Gorai.010G235500 Gossypium raimondii HOM05D004368 ORTHO05D004990 1.4e-97 360.5 336 60.1
Gorai.009G145200 Gossypium raimondii HOM05D004368 ORTHO05D004990 2.3e-97 359.8 333 62.2
Cc06_g01580 Coffea canephora HOM05D004368 ORTHO05D004990 3.9e-97 359.0 234 79.5
PGR119G1615 Punica granatum HOM05D004368 ORTHO05D004990 3.9e-97 359.0 229 80.8
ClCG07G014470 Citrullus lanatus HOM05D004368 ORTHO05D004990 5.2e-97 358.6 334 60.2
MD17G1148400 Malus domestica HOM05D004368 ORTHO05D004990 1.5e-96 357.1 339 61.4
Gohir.D06G201700 Gossypium hirsutum HOM05D004368 ORTHO05D004990 4.4e-96 355.5 247 73.3
Cpa.g.sc25.148 Carica papaya HOM05D004368 ORTHO05D004990 7.4e-96 354.8 211 85.8
Gohir.A05G138800 Gossypium hirsutum HOM05D004368 ORTHO05D004990 1.3e-95 354.0 224 81.7
Haze_16075 Corylus avellana HOM05D004368 ORTHO05D004990 1.7e-95 353.6 337 61.7
DCAR_016106 Daucus carota HOM05D004368 ORTHO05D004990 2.2e-95 353.2 333 60.7
Gohir.D05G141000 Gossypium hirsutum HOM05D004368 ORTHO05D004990 2.2e-95 353.2 224 81.2
THA.LOC104822665 Tarenaya hassleriana HOM05D004368 ORTHO05D004990 2.2e-95 353.2 339 61.1
Aa31LG8G1340 Aethionema arabicum HOM05D004368 ORTHO05D004990 1.1e-94 350.9 338 60.9
FAN02G3674 Fragaria x ananassa HOM05D004368 ORTHO05D004990 1.1e-94 350.9 340 60.0
FAN05G4100 Fragaria x ananassa HOM05D004368 ORTHO05D004990 1.1e-94 350.9 340 60.0
FAN09G0342 Fragaria x ananassa HOM05D004368 ORTHO05D004990 1.1e-94 350.9 224 81.7
Ah.15g095150 Amaranthus hybridus HOM05D004368 ORTHO05D004990 1.4e-94 350.5 245 73.9
MBI02_g13231_MAGBIO Magnolia biondii HOM05D004368 ORTHO05D004990 1.4e-94 350.5 316 64.2
Sp3g12370 Schrenkiella parvula HOM05D004368 ORTHO05D004990 1.4e-94 350.5 340 59.1
Sc15g0000580 Simmondsia chinensis HOM05D004368 ORTHO05D004990 1.4e-94 350.5 233 78.1
Hund18675 Selenicereus undatus HOM05D004368 ORTHO05D004990 1.8e-94 350.1 250 74.4
Peaxi162Scf00043g02929 Petunia axillaris HOM05D004368 ORTHO05D004990 3.1e-94 349.4 225 79.1
RcHm_v2.0_Chr2g0146421 Rosa chinensis HOM05D004368 ORTHO05D004990 5.3e-94 348.6 230 80.0
Sed0018133 Sechium edule HOM05D004368 ORTHO05D004990 5.3e-94 348.6 335 58.8
AT3G14110 Arabidopsis thaliana HOM05D004368 ORTHO05D004990 7.0e-94 348.2 338 59.5
FvH4_6g35160 Fragaria vesca HOM05D004368 ORTHO05D004990 7.0e-94 348.2 229 79.9
Nitab4.5_0003342g0020 Nicotiana tabacum HOM05D004368 ORTHO05D004990 9.1e-94 347.8 226 79.2
CsaV3_3G030850 Cucumis sativus L. HOM05D000945 ORTHO05D000919 1.2e-93 347.4 230 77.4
MD09G1178400 Malus domestica HOM05D004368 ORTHO05D004990 1.2e-93 347.4 235 77.4
Carub.0003s1372 Capsella rubella HOM05D004368 ORTHO05D004990 1.6e-93 347.1 237 76.8
AUR62009921 Chenopodium quinoa HOM05D004368 ORTHO05D004990 2.6e-93 346.3 221 79.6
AUR62001444 Chenopodium quinoa HOM05D004368 ORTHO05D004990 3.5e-93 345.9 231 76.6
QL05p003761 Quercus lobata HOM05D004368 ORTHO05D004990 4.5e-93 345.5 223 80.7
MELO3C022680.2 Cucumis melo HOM05D004368 ORTHO05D004990 7.7e-93 344.7 230 77.0
Thhalv10021156m.g Eutrema salsugineum HOM05D004368 ORTHO05D004990 7.7e-93 344.7 252 73.4
Lj3g0026199 Lotus japonicus HOM05D004368 ORTHO05D004990 7.7e-93 344.7 335 58.2
Nitab4.5_0000845g0110 Nicotiana tabacum HOM05D004368 ORTHO05D004990 7.7e-93 344.7 226 78.8
CAN.G1487.1 Capsicum annuum HOM05D004368 ORTHO05D004990 1.3e-92 344.0 228 77.6
ECA247G3177 Erigeron canadensis HOM05D004368 ORTHO05D004990 1.7e-92 343.6 334 60.8
VMungo0540G1553 Vigna mungo HOM05D004368 ORTHO05D004990 2.9e-92 342.8 236 75.4
EL10Ac7g16443 Beta vulgaris HOM05D004368 ORTHO05D004990 5.0e-92 342.0 232 75.9
DCAR_022662 Daucus carota HOM05D004368 ORTHO05D004990 8.5e-92 341.3 239 74.1
TPR.G29997 Trifolium pratense HOM05D004368 ORTHO05D004990 1.1e-91 340.9 224 75.4
PGSC0003DMG400003792 Solanum tuberosum HOM05D004368 ORTHO05D004990 2.5e-91 339.7 225 78.2
Solyc09g072880.3 Solanum lycopersicum HOM05D004368 ORTHO05D004990 3.2e-91 339.3 230 76.1
CARHR088970 Cardamine hirsuta HOM05D004368 ORTHO05D004990 4.2e-91 339.0 231 74.9
HanXRQChr15g0497161 Helianthus annuus HOM05D004368 ORTHO05D004990 5.5e-91 338.6 245 73.1
Psat4g167320 Pisum sativum HOM05D004368 ORTHO05D004990 5.5e-91 338.6 335 57.0
Sopen09g028680 Solanum pennellii HOM05D004368 ORTHO05D004990 5.5e-91 338.6 225 77.3
Sopen09g028700 Solanum pennellii HOM05D004368 ORTHO05D004990 5.5e-91 338.6 225 77.3
CANSAT56G3889 Cannabis sativa HOM05D004368 ORTHO05D004990 1.2e-90 337.4 340 59.4
A05p35340 Brassica napus HOM05D004368 ORTHO05D004990 1.6e-90 337.0 233 76.0
BraA05t22344Z Brassica rapa HOM05D004368 ORTHO05D004990 1.6e-90 337.0 233 76.0
C05p53530 Brassica napus HOM05D004368 ORTHO05D004990 2.1e-90 336.7 231 75.3
BolC5t34030H Brassica oleracea HOM05D004368 ORTHO05D004990 2.1e-90 336.7 231 75.3
Aqoxy7G01007 Aquilegia oxysepala HOM05D004368 ORTHO05D004990 3.6e-90 335.9 247 72.1
FAN14G3095 Fragaria x ananassa HOM05D004368 ORTHO05D004990 3.6e-90 335.9 253 72.3
Glyma.16G010200 Glycine max HOM05D004368 ORTHO05D004990 3.6e-90 335.9 225 77.3
Peaxi162Scf01157g00111 Petunia axillaris HOM05D004368 ORTHO05D004990 4.7e-90 335.5 232 75.0
unitig_27.g24839 Utricularia gibba HOM05D004368 ORTHO05D004990 1.0e-89 334.3 250 71.6
A03p38620 Brassica napus HOM05D004368 ORTHO05D004990 1.4e-89 334.0 335 56.7
Medtr8g022040 Medicago truncatula HOM05D004368 ORTHO05D004990 1.8e-89 333.6 225 74.7
AL3G26340 Arabidopsis lyrata HOM05D004368 ORTHO05D004990 2.3e-89 333.2 220 78.2
Glyma.07G041700 Glycine max HOM05D004368 ORTHO05D004990 3.0e-89 332.8 225 76.4
unitig_27.g24862 Utricularia gibba HOM05D004368 ORTHO05D004990 4.0e-89 332.4 231 74.9
Phvul.006G206500 Phaseolus vulgaris HOM05D004368 ORTHO05D004990 5.2e-89 332.0 225 76.9
Lalb_Chr17g0343461 Lupinus albus HOM05D004368 ORTHO05D004990 6.8e-89 331.6 225 76.4
BolC3t16938H Brassica oleracea HOM05D004368 ORTHO05D004990 8.8e-89 331.3 337 56.1
ECA248G3608 Erigeron canadensis HOM05D004368 ORTHO05D004990 1.2e-88 330.9 245 71.8
Sabra01G0127300 Salix brachista HOM05D004368 ORTHO05D004990 1.2e-88 330.9 433 50.3
C03p46730 Brassica napus HOM05D004368 ORTHO05D004990 2.0e-88 330.1 238 73.1
BcaC01g03958 Brassica carinata HOM05D004368 ORTHO05D004990 3.4e-88 329.3 238 72.3
Oeu064511.1 Olea europaea HOM05D004368 ORTHO05D004990 3.4e-88 329.3 211 80.6
BcaB04g18818 Brassica carinata HOM05D004368 ORTHO05D004990 5.7e-88 328.6 236 72.5
Ca_23409_v3 Cicer arietinum L. HOM05D004368 ORTHO05D004990 5.7e-88 328.6 225 75.6
BraA03t13009Z Brassica rapa HOM05D004368 ORTHO05D004990 1.7e-87 327.0 232 74.1
PSO724G0024 Papaver somniferum HOM05D004368 ORTHO05D004990 1.7e-87 327.0 234 71.4
CAN.G941.28 Capsicum annuum HOM05D004368 ORTHO05D004990 8.3e-87 324.7 229 73.8
Solyc06g008160.4 Solanum lycopersicum HOM05D004368 ORTHO05D004990 1.1e-86 324.3 246 69.1
PSO386G0078 Papaver somniferum HOM05D004368 ORTHO05D004990 1.4e-86 323.9 234 70.5
unitig_699.g19383 Utricularia gibba HOM05D004368 ORTHO05D004990 2.4e-86 323.2 231 72.3
SalBow5G3644 Salvia bowleyana HOM05D004368 ORTHO05D004990 3.1e-86 322.8 218 78.4
Sopen06g002970 Solanum pennellii HOM05D004368 ORTHO05D004990 5.3e-86 322.0 229 72.9
ATR0568G120 Amborella trichopoda HOM05D004368 ORTHO05D004990 1.2e-85 320.9 228 75.0
SalBow5G0362 Salvia bowleyana HOM05D004368 ORTHO05D004990 1.6e-85 320.5 218 78.0
Lsat_1_v5_gn_4_91400 Lactuca sativa HOM05D004368 ORTHO05D004990 3.5e-85 319.3 220 75.9
CDE05G2024 Ceratophyllum demersum HOM05D004368 ORTHO05D004990 6.5e-84 315.1 218 74.3
Os01g0510600 Oryza sativa ssp. japonica HOM05D004368 ORTHO05D004990 5.5e-83 312.0 214 74.8
HPP92_003012 Vanilla planifolia HOM05D004368 ORTHO05D004990 5.5e-83 312.0 221 73.8
Migut.L01998 Erythranthe guttata HOM05D004368 ORTHO05D004990 7.2e-83 311.6 221 72.4
Dinv20409 Davidia involucrata HOM05D004368 ORTHO05D004990 1.6e-82 310.5 271 63.5
Nn6g35672 Nelumbo nucifera HOM05D004368 ORTHO05D004990 1.6e-82 310.5 238 69.3
Lalb_Chr04g0253731 Lupinus albus HOM05D004368 ORTHO05D004990 1.4e-81 307.4 225 71.6
BcaC05g29122 Brassica carinata HOM05D004368 ORTHO05D004990 8.8e-81 304.7 231 69.3
Zm00001eb308830 Zea mays HOM05D004368 ORTHO05D004990 1.5e-80 303.9 227 69.2
CDE04G0878 Ceratophyllum demersum HOM05D004368 ORTHO05D004990 3.4e-80 302.8 220 72.7
HanXRQChr09g0277121 Helianthus annuus HOM05D004368 ORTHO05D004990 4.4e-80 302.4 219 73.1
arahy.Tifrunner.gnm1.ann1.26KYL2 Arachis hypogaea HOM05D004368 ORTHO05D004990 2.2e-79 300.1 231 68.8
Dinv37846 Davidia involucrata HOM05D004368 ORTHO05D004990 2.8e-79 299.7 271 62.0
arahy.Tifrunner.gnm1.ann1.AFL61P Arachis hypogaea HOM05D004368 ORTHO05D004990 1.1e-75 287.7 177 81.9
Atru.chr1.4073 Acer truncatum HOM05D004368 ORTHO05D004990 1.9e-75 287.0 177 84.7
Gorai.004G102400 Gossypium raimondii HOM05D004368 ORTHO05D004990 1.2e-69 267.7 190 75.3
Nitab4.5_0006980g0020 Nicotiana tabacum HOM05D004368 ORTHO05D004990 1.7e-68 263.8 169 79.3
Atru.chr1.4083 Acer truncatum HOM05D004368 ORTHO05D004990 1.5e-67 260.8 193 74.6
Nitab4.5_0000326g0270 Nicotiana tabacum HOM05D004368 ORTHO05D004990 2.3e-65 253.4 166 77.7
Os02g0586800 Oryza sativa ssp. japonica HOM05D004368 ORTHO05D004990 6.8e-65 251.9 218 61.9
Prupe.3G037600 Prunus persica HOM05D004368 ORTHO05D004990 9.8e-64 248.1 275 55.6
Gorai.001G096600 Gossypium raimondii HOM05D004368 ORTHO05D004990 3.7e-63 246.1 204 68.6
Mapoly0108s0002 Marchantia polymorpha HOM05D004368 ORTHO05D004990 1.4e-62 244.2 245 57.1
Mapoly0110s0050 Marchantia polymorpha HOM05D004368 ORTHO05D004990 1.4e-62 244.2 245 57.1
Gohir.D08G096333 Gossypium hirsutum HOM05D004368 ORTHO05D004990 3.2e-62 243.0 190 71.1
SGA_v2.0_scaffold110G31269 Striga asiatica HOM05D004368 ORTHO05D004990 1.2e-61 241.1 318 48.1
CDE05G2107 Ceratophyllum demersum HOM05D004368 ORTHO05D004990 1.0e-60 238.0 218 61.0
FAN05G2230 Fragaria x ananassa HOM05D004368 ORTHO05D004990 5.0e-60 235.7 163 77.9
Gohir.D07G090325 Gossypium hirsutum HOM05D004368 ORTHO05D004990 1.5e-59 234.2 173 72.8
AagrBONN_evm.TU.Sc2ySwM_228.3011 Anthoceros agrestis HOM05D004368 ORTHO05D004990 4.7e-58 229.2 185 65.9
Rhsim03G0211800 Rhododendron simsii HOM05D004368 ORTHO05D004990 1.1e-54 218.0 346 42.2
HPP92_027544 Vanilla planifolia HOM05D004368 ORTHO05D004990 7.1e-54 215.3 160 72.5
Pp3c11_3130 Physcomitrium patens HOM05D004368 ORTHO05D004990 2.1e-53 213.8 184 60.9
CBR_g39266 Chara braunii HOM05D004368 ORTHO05D004990 1.0e-52 211.5 184 59.8
SMO141G0180 Selaginella moellendorffii HOM05D004368 ORTHO05D004990 8.1e-50 201.8 186 57.5
Zm00001eb245590 Zea mays HOM05D004368 ORTHO05D004990 3.6e-42 176.4 153 60.8
TWI14G0995 Tripterygium wilfordii HOM05D004368 ORTHO05D004990 7.3e-35 152.1 343 36.2
Cre10.g460050 Chlamydomonas reinhardtii HOM05D004368 ORTHO05D004990 6.4e-31 139.0 245 35.9
PGSC0003DMG400014712 Solanum tuberosum HOM05D004368 ORTHO05D004990 5.3e-25 119.4 68 83.8
PRCOL_00003238 Prasinoderma coloniale HOM05D004368 ORTHO05D004990 1.9e-19 100.9 207 32.9
MCO14G328 Micromonas commoda HOM05D004368 ORTHO05D004990 1.1e-17 95.1 235 31.1
MCO11G340 Micromonas commoda HOM05D004368 ORTHO05D004990 1.8e-17 94.4 201 32.3
PRCOL_00003077 Prasinoderma coloniale HOM05D004368 ORTHO05D004990 4.6e-13 79.7 243 29.2
SGA_v2.0_scaffold382G50397 Striga asiatica HOM05D004368 ORTHO05D004990 4.3e-11 73.2 42 78.6
RcHm_v2.0_Chr5g0074611 Rosa chinensis HOM05D004368 ORTHO05D004990 1.3e-10 71.6 56 64.3
TAR624G0904 Trochodendron aralioides HOM05D004368 ORTHO05D004990 2.8e-10 70.5 46 78.3
MCO15G457 Micromonas commoda HOM05D004368 ORTHO05D268172 1.4e-09 68.2 201 29.9
TAR624G0589 Trochodendron aralioides HOM05D004368 ORTHO05D004990 4.1e-09 66.6 41 73.2
CBR_g29854 Chara braunii HOM05D004368 ORTHO05D004990 6.9e-09 65.9 55 60.0
Nitab4.5_0000780g0100 Nicotiana tabacum HOM05D004368 ORTHO05D004990 6.9e-09 65.9 164 34.8


User provided reference genes

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