Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01016662001 Vitis vinifera HOM05D008031 ORTHO05D010063 1.5e-89 332.8 163 100.0
Potri.001G162100 Populus trichocarpa HOM05D008031 ORTHO05D010063 3.8e-45 185.3 163 55.8
Manes.04G151400 Manihot esculenta HOM05D008031 ORTHO05D010063 1.5e-44 183.3 164 58.5
TWI14G1127 Tripterygium wilfordii HOM05D008031 ORTHO05D010063 3.6e-43 178.7 163 54.0
QL05p000882 Quercus lobata HOM05D008031 ORTHO05D010063 8.0e-43 177.6 163 57.1
QL05p001111 Quercus lobata HOM05D008031 ORTHO05D010063 8.0e-43 177.6 163 57.1
Atru.chr1.4165 Acer truncatum HOM05D008031 ORTHO05D010063 2.0e-41 172.9 165 54.5
Thecc.06G130800 Theobroma cacao HOM05D008031 ORTHO05D010063 3.7e-40 168.7 163 53.4
TAR626G1534 Trochodendron aralioides HOM05D008031 ORTHO05D010063 6.3e-40 167.9 164 54.9
COL.COLO4_30875 Corchorus olitorius HOM05D008031 ORTHO05D010063 8.3e-40 167.5 163 53.4
Atru.chr1.4161 Acer truncatum HOM05D008031 ORTHO05D010063 7.0e-39 164.5 163 53.4
Hma1.2p1_0090F.1_g045750 Hydrangea macrophylla HOM05D008031 ORTHO05D010063 7.0e-39 164.5 165 53.9
Hma1.2p1_2628F.1_g325675 Hydrangea macrophylla HOM05D008031 ORTHO05D010063 7.0e-39 164.5 165 53.9
Potri.003G073200 Populus trichocarpa HOM05D008031 ORTHO05D010063 7.0e-39 164.5 163 52.1
CiPaw.01G211000 Carya illinoinensis HOM05D008031 ORTHO05D010063 5.9e-38 161.4 166 54.8
Haze_16140 Corylus avellana HOM05D001728 ORTHO05D004321 3.8e-37 158.7 164 52.4
Actinidia21841 Actinidia chinensis HOM05D008031 ORTHO05D010063 1.9e-36 156.4 168 50.6
Ciclev10027015m.g Citrus clementina HOM05D008031 ORTHO05D010063 3.6e-35 152.1 142 57.0
Lalb_Chr10g0101091 Lupinus albus HOM05D008031 ORTHO05D010063 1.0e-34 150.6 164 50.6
Prupe.3G030600 Prunus persica HOM05D008031 ORTHO05D010063 1.0e-34 150.6 163 49.7
CiPaw.02G130600 Carya illinoinensis HOM05D008031 ORTHO05D010063 2.3e-34 149.4 168 50.6
Duzib235G0155 Durio zibethinus HOM05D008031 ORTHO05D010063 8.8e-34 147.5 135 54.8
Glyma.07G046300 Glycine max HOM05D008031 ORTHO05D010063 1.5e-33 146.7 166 48.8
CSS0025062 Camellia sinensis var. sinensis HOM05D001728 ORTHO05D004321 3.4e-33 145.6 166 52.4
Eucgr.J02592 Eucalyptus grandis HOM05D008031 ORTHO05D010063 5.7e-33 144.8 164 48.8
Gohir.D10G051032 Gossypium hirsutum HOM05D001728 ORTHO05D004321 1.3e-32 143.7 163 47.9
Gorai.011G054900 Gossypium raimondii HOM05D001728 ORTHO05D004321 1.3e-32 143.7 163 47.9
Actinidia24421 Actinidia chinensis HOM05D001728 ORTHO05D004321 2.8e-32 142.5 168 50.6
Gohir.A10G048037 Gossypium hirsutum HOM05D001728 ORTHO05D004321 3.7e-32 142.1 163 47.2
Cfa003457 Carpinus fangiana HOM05D008031 ORTHO05D010063 4.8e-32 141.7 166 49.4
Oeu019510.1 Olea europaea HOM05D008031 ORTHO05D010063 2.4e-31 139.4 166 47.0
RcHm_v2.0_Chr2g0148091 Rosa chinensis HOM05D008031 ORTHO05D010063 3.1e-31 139.0 162 45.1
VMungo0331G1222 Vigna mungo HOM05D008031 ORTHO05D010063 3.1e-31 139.0 167 45.5
Phvul.010G122700 Phaseolus vulgaris HOM05D008031 ORTHO05D010063 3.5e-30 135.6 167 43.7
Lj3g0013752 Lotus japonicus HOM05D008031 ORTHO05D010063 4.5e-30 135.2 166 45.8
FAN02G3240 Fragaria x ananassa HOM05D008031 ORTHO05D010063 7.7e-30 134.4 162 43.2
MBI19_g32875_MAGBIO Magnolia biondii HOM05D008031 ORTHO05D010063 7.7e-30 134.4 169 49.1
PGR102G3014 Punica granatum HOM05D008031 ORTHO05D010063 7.7e-30 134.4 164 48.2
FvH4_6g35970 Fragaria vesca HOM05D008031 ORTHO05D010063 1.3e-29 133.7 162 43.8
FAN09G4453 Fragaria x ananassa HOM05D008031 ORTHO05D010063 1.3e-29 133.7 162 43.8
FAN14G4753 Fragaria x ananassa HOM05D008031 ORTHO05D010063 1.3e-29 133.7 162 43.8
Peaxi162Scf00038g02327 Petunia axillaris HOM05D008031 ORTHO05D010063 1.7e-29 133.3 168 46.4
MD09G1172200 Malus domestica HOM05D008031 ORTHO05D010063 5.0e-29 131.7 148 45.9
Medtr8g023390 Medicago truncatula HOM05D008031 ORTHO05D010063 6.6e-29 131.3 154 46.8
FAN05G2192 Fragaria x ananassa HOM05D008031 ORTHO05D010063 8.6e-29 131.0 162 43.2
MD17G1154700 Malus domestica HOM05D008031 ORTHO05D010063 1.5e-28 130.2 148 47.3
ClCG07G014260 Citrullus lanatus HOM05D008031 ORTHO05D010063 2.5e-28 129.4 163 44.2
SGA_v2.0_scaffold71G23934 Striga asiatica HOM05D008031 ORTHO05D010063 2.5e-28 129.4 167 45.5
CANSAT56G3277 Cannabis sativa HOM05D008031 ORTHO05D010063 3.3e-28 129.0 166 45.2
Oeu053417.1 Olea europaea HOM05D008031 ORTHO05D010063 3.3e-28 129.0 166 46.4
Rhsim08G0245200 Rhododendron simsii HOM05D008031 ORTHO05D010063 1.2e-27 127.1 165 46.1
MELO3C022708.2 Cucumis melo HOM05D008031 ORTHO05D010063 2.8e-27 125.9 146 49.3
Cpa.g.sc25.199 Carica papaya HOM05D008031 ORTHO05D010063 3.6e-27 125.6 165 46.7
Dinv20378 Davidia involucrata HOM05D001728 ORTHO05D004321 3.6e-27 125.6 165 44.8
CsaV3_3G031060 Cucumis sativus L. HOM05D008031 ORTHO05D010063 4.7e-27 125.2 146 50.0
TPR.G29474 Trifolium pratense HOM05D008031 ORTHO05D010063 1.0e-26 124.0 171 44.4
Cc04_g00650 Coffea canephora HOM05D008031 ORTHO05D010063 4.0e-26 122.1 167 46.1
Solyc03g123670.3 Solanum lycopersicum HOM05D008031 ORTHO05D010063 1.5e-25 120.2 169 44.4
Sed0024761 Sechium edule HOM05D008031 ORTHO05D010063 3.4e-25 119.0 165 45.5
Sopen03g041440 Solanum pennellii HOM05D008031 ORTHO05D010063 1.7e-24 116.7 169 43.8
PGSC0003DMG400009151 Solanum tuberosum HOM05D008031 ORTHO05D010063 3.7e-24 115.5 169 43.8
arahy.Tifrunner.gnm1.ann1.PVL51W Arachis hypogaea HOM05D008031 ORTHO05D010063 4.1e-23 112.1 159 44.7
Aqoxy7G04192 Aquilegia oxysepala HOM05D008031 ORTHO05D010063 1.2e-22 110.5 170 45.3
Glyma.16G014500 Glycine max HOM05D008031 ORTHO05D010063 2.0e-22 109.8 166 40.4
Nitab4.5_0006338g0010 Nicotiana tabacum HOM05D008031 ORTHO05D010063 2.0e-22 109.8 169 40.8
Migut.I01137 Erythranthe guttata HOM05D008031 ORTHO05D010063 7.8e-22 107.8 170 42.4
arahy.Tifrunner.gnm1.ann1.CKB8X1 Arachis hypogaea HOM05D008031 ORTHO05D010063 1.7e-21 106.7 162 43.8
arahy.Tifrunner.gnm1.ann1.8JA41T Arachis hypogaea HOM05D008031 ORTHO05D010063 2.3e-21 106.3 161 44.1
Eucgr.I02164 Eucalyptus grandis HOM05D008031 ORTHO05D010063 2.1e-19 99.8 156 42.9
Nitab4.5_0006966g0010 Nicotiana tabacum HOM05D008031 ORTHO05D010063 2.8e-19 99.4 168 37.5
DCAR_022641 Daucus carota HOM05D008031 ORTHO05D010063 3.4e-17 92.4 171 43.3
Oeu015468.1 Olea europaea HOM05D008031 ORTHO05D010063 4.4e-17 92.0 164 39.6
Ah.08g217400 Amaranthus hybridus HOM05D008031 ORTHO05D010063 1.7e-16 90.1 179 36.9
Lsat_1_v5_gn_4_90600 Lactuca sativa HOM05D008031 ORTHO05D010063 3.2e-15 85.9 149 40.9
Hund18631 Selenicereus undatus HOM05D008031 ORTHO05D010063 3.2e-15 85.9 167 41.9
Manes.15G010800 Manihot esculenta HOM05D005099 ORTHO05D006087 1.7e-13 80.1 178 35.4
Rhsim02G0007200 Rhododendron simsii HOM05D005099 ORTHO05D006087 5.6e-12 75.1 180 33.3
Cfa015424 Carpinus fangiana HOM05D005099 ORTHO05D006087 7.3e-12 74.7 182 33.0
Nn3g21536 Nelumbo nucifera HOM05D005099 ORTHO05D006087 7.3e-12 74.7 178 34.8
Thecc.04G288600 Theobroma cacao HOM05D005099 ORTHO05D006087 7.3e-12 74.7 188 32.4
TAR365G0602 Trochodendron aralioides HOM05D005099 ORTHO05D006087 7.3e-12 74.7 189 31.2
MSTRG.9544 Avicennia marina HOM05D008031 ORTHO05D010063 9.5e-12 74.3 147 38.1
CSS0011820 Camellia sinensis var. sinensis HOM05D005099 ORTHO05D006087 9.5e-12 74.3 173 34.1
Duzib212G0134 Durio zibethinus HOM05D005099 ORTHO05D006087 9.5e-12 74.3 187 31.6
TAR362G0212 Trochodendron aralioides HOM05D005099 ORTHO05D006087 9.5e-12 74.3 178 33.7
Peaxi162Scf00065g00138 Petunia axillaris HOM05D005099 ORTHO05D006087 2.1e-11 73.2 195 29.7
Haze_01169 Corylus avellana HOM05D005099 ORTHO05D006087 3.6e-11 72.4 181 32.6
vmacro15214 Vaccinium macrocarpon HOM05D005099 ORTHO05D006087 4.7e-11 72.0 162 32.1
Actinidia14282 Actinidia chinensis HOM05D005099 ORTHO05D006087 8.0e-11 71.2 178 36.5
CsaV3_6G023860 Cucumis sativus L. HOM05D005099 ORTHO05D006087 1.1e-10 70.9 185 34.1
Dinv44353 Davidia involucrata HOM05D005099 ORTHO05D006087 1.1e-10 70.9 184 32.6
MBI18_g04556_MAGBIO Magnolia biondii HOM05D005099 ORTHO05D006087 1.1e-10 70.9 174 32.8
FvH4_4g18620 Fragaria vesca HOM05D005099 ORTHO05D006087 1.4e-10 70.5 181 31.5
FAN12G1484 Fragaria x ananassa HOM05D005099 ORTHO05D006087 1.4e-10 70.5 181 31.5
FAN12G1671 Fragaria x ananassa HOM05D005099 ORTHO05D006087 1.4e-10 70.5 181 31.5
Hma1.2p1_0804F.1_g221070 Hydrangea macrophylla HOM05D005099 ORTHO05D006087 1.4e-10 70.5 180 31.7
SalBow6G0345 Salvia bowleyana HOM05D008031 ORTHO05D010063 1.4e-10 70.5 161 38.5
Ciclev10006010m.g Citrus clementina HOM05D005099 ORTHO05D006087 3.1e-10 69.3 180 30.6
Cc03_g01550 Coffea canephora HOM05D005099 ORTHO05D006087 4.0e-10 68.9 189 30.7
Potri.008G219500 Populus trichocarpa HOM05D005099 ORTHO05D006087 5.2e-10 68.6 188 31.9
CiPaw.01G145600 Carya illinoinensis HOM05D005099 ORTHO05D006087 6.8e-10 68.2 184 31.5
Duzib151G0929 Durio zibethinus HOM05D005099 ORTHO05D006087 6.8e-10 68.2 189 31.2
ClCG06G004980 Citrullus lanatus HOM05D005099 ORTHO05D006087 1.2e-09 67.4 180 32.2
HanXRQChr17g0536041 Helianthus annuus HOM05D005099 ORTHO05D006087 1.2e-09 67.4 184 32.1
Phvul.009G250300 Phaseolus vulgaris HOM05D005099 ORTHO05D006087 1.2e-09 67.4 187 31.0
Manes.03G198300 Manihot esculenta HOM05D005099 ORTHO05D006087 1.5e-09 67.0 182 33.0
MELO3C021313.2 Cucumis melo HOM05D005099 ORTHO05D006087 2.0e-09 66.6 183 32.2
Sabra08G0151700 Salix brachista HOM05D005099 ORTHO05D006087 2.0e-09 66.6 186 31.2
CiPaw.02G080200 Carya illinoinensis HOM05D005099 ORTHO05D006087 2.6e-09 66.2 190 33.2
HPP92_016651 Vanilla planifolia HOM05D042795 ORTHO05D010063 2.6e-09 66.2 144 36.8
Sp3g05800 Schrenkiella parvula HOM05D005099 ORTHO05D006087 3.4e-09 65.9 183 29.5
EL10Ac3g06640 Beta vulgaris HOM05D005099 ORTHO05D006087 4.4e-09 65.5 187 31.6
HPP92_016648 Vanilla planifolia HOM05D042795 ORTHO05D010063 4.4e-09 65.5 144 36.1
VMungo1309G2116 Vigna mungo HOM05D005099 ORTHO05D006087 4.4e-09 65.5 185 31.9
CDE05G1539 Ceratophyllum demersum HOM05D008031 ORTHO05D010063 1.3e-08 63.9 174 30.5
TWI73G1062 Tripterygium wilfordii HOM05D005099 ORTHO05D006087 1.3e-08 63.9 192 28.1
COL.COLO4_13826 Corchorus olitorius HOM05D005099 ORTHO05D006087 1.7e-08 63.5 192 29.2
THA.LOC104827334 Tarenaya hassleriana HOM05D005099 ORTHO05D006087 1.7e-08 63.5 190 28.9
FAN07G0877 Fragaria x ananassa HOM05D005099 ORTHO05D006087 2.2e-08 63.2 184 31.5
Glyma.09G042500 Glycine max HOM05D005099 ORTHO05D006087 2.2e-08 63.2 184 30.4
Potri.010G010600 Populus trichocarpa HOM05D005099 ORTHO05D006087 2.2e-08 63.2 187 29.9
PGR004G0666 Punica granatum HOM05D005099 ORTHO05D006087 2.2e-08 63.2 182 29.1
SalBow2G2334 Salvia bowleyana HOM05D005099 ORTHO05D006087 2.2e-08 63.2 177 33.9
MSTRG.3894 Avicennia marina HOM05D005099 ORTHO05D006087 2.9e-08 62.8 176 30.1
Oeu033813.1 Olea europaea HOM05D005099 ORTHO05D006087 2.9e-08 62.8 181 29.3
Sed0019517 Sechium edule HOM05D005099 ORTHO05D006087 2.9e-08 62.8 185 31.9
Atru.chr4.2896 Acer truncatum HOM05D005099 ORTHO05D006087 3.7e-08 62.4 190 31.6
QL06p010333 Quercus lobata HOM05D005099 ORTHO05D006087 4.9e-08 62.0 193 32.6
RcHm_v2.0_Chr4g0423321 Rosa chinensis HOM05D005099 ORTHO05D006087 4.9e-08 62.0 186 30.1
Prupe.1G124100 Prunus persica HOM05D005099 ORTHO05D006087 6.4e-08 61.6 179 30.2
Sabra10G0006200 Salix brachista HOM05D005099 ORTHO05D006087 6.4e-08 61.6 188 30.9
FAN17G2615 Fragaria x ananassa HOM05D005099 ORTHO05D006087 8.3e-08 61.2 183 31.1
Nn4g25764 Nelumbo nucifera HOM05D005099 ORTHO05D006087 8.3e-08 61.2 184 34.2
AUR62015274 Chenopodium quinoa HOM05D005099 ORTHO05D006087 1.1e-07 60.8 181 30.4
Dinv29728 Davidia involucrata HOM05D005099 ORTHO05D006087 1.1e-07 60.8 174 29.3
arahy.Tifrunner.gnm1.ann1.2UKM1V Arachis hypogaea HOM05D005099 ORTHO05D006087 1.9e-07 60.1 177 29.4
CANSAT78G2455 Cannabis sativa HOM05D005099 ORTHO05D006087 1.9e-07 60.1 194 29.9
AUR62018071 Chenopodium quinoa HOM05D005099 ORTHO05D006087 1.9e-07 60.1 181 31.5
Eucgr.H03959 Eucalyptus grandis HOM05D005099 ORTHO05D006087 3.2e-07 59.3 212 28.3
MD16G1164800 Malus domestica HOM05D005099 ORTHO05D006087 3.2e-07 59.3 186 28.0
Medtr2g435810 Medicago truncatula HOM05D005099 ORTHO05D006087 3.2e-07 59.3 182 29.7
Medtr2g436150 Medicago truncatula HOM05D005099 ORTHO05D006087 3.2e-07 59.3 182 29.7
CSS0049831 Camellia sinensis var. sinensis HOM05D005099 ORTHO05D006087 4.1e-07 58.9 176 31.8
arahy.Tifrunner.gnm1.ann1.2F59RJ Arachis hypogaea HOM05D005099 ORTHO05D006087 9.2e-07 57.8 177 28.8
Nitab4.5_0000695g0110 Nicotiana tabacum HOM05D005099 ORTHO05D006087 1.2e-06 57.4 187 30.5
THA.LOC104818909 Tarenaya hassleriana HOM05D005099 ORTHO05D006087 2.7e-06 56.2 205 27.8
Aa31LG5G17420 Aethionema arabicum HOM05D005099 ORTHO05D006087 4.6e-06 55.5 178 29.2
SEGI_30103 Sequoiadendron giganteum HOM05D036824 ORTHO05D010063 7.8e-06 54.7 163 30.1
SEGI_39614 Sequoiadendron giganteum HOM05D036824 ORTHO05D010063 7.8e-06 54.7 163 30.1


User provided reference genes

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