Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01016388001 Vitis vinifera HOM05D004764 ORTHO05D005580 1.5e-162 576.2 310 100.0
TWI73G0601 Tripterygium wilfordii HOM05D004764 ORTHO05D005580 1.7e-134 483.0 310 82.6
QL07p043722 Quercus lobata HOM05D004764 ORTHO05D005580 3.8e-134 481.9 309 80.9
Potri.010G194300 Populus trichocarpa HOM05D004764 ORTHO05D005580 1.4e-133 479.9 312 81.4
Dinv20933 Davidia involucrata HOM05D004764 ORTHO05D005580 5.4e-133 478.0 317 80.4
Dinv21011 Davidia involucrata HOM05D004764 ORTHO05D005580 5.4e-133 478.0 317 80.4
Manes.10G019100 Manihot esculenta HOM05D004764 ORTHO05D005580 7.1e-133 477.6 310 81.6
CSS0016003 Camellia sinensis var. sinensis HOM05D004764 ORTHO05D005580 2.1e-132 476.1 318 78.9
CSS0010099 Camellia sinensis var. sinensis HOM05D004764 ORTHO05D005580 7.8e-132 474.2 318 78.6
Cpa.g.sc19.234 Carica papaya HOM05D004764 ORTHO05D005580 1.5e-130 469.9 310 79.7
TWI09G1390 Tripterygium wilfordii HOM05D004764 ORTHO05D005580 1.5e-130 469.9 310 79.7
Atru.chr12.324 Acer truncatum HOM05D004764 ORTHO05D005580 1.3e-129 466.8 310 79.7
Cfa017589 Carpinus fangiana HOM05D004764 ORTHO05D005580 1.3e-129 466.8 310 78.4
CiPaw.10G131000 Carya illinoinensis HOM05D004764 ORTHO05D005580 1.6e-129 466.5 310 80.0
Ciclev10032191m.g Citrus clementina HOM05D004764 ORTHO05D005580 4.8e-129 464.9 310 79.4
TAR623G1788 Trochodendron aralioides HOM05D004764 ORTHO05D005580 8.1e-129 464.2 310 79.4
Atru.chr12.285 Acer truncatum HOM05D004764 ORTHO05D005580 1.4e-128 463.4 310 79.0
vmacro01597 Vaccinium macrocarpon HOM05D004764 ORTHO05D005580 3.1e-128 462.2 318 76.7
THA.LOC104816565 Tarenaya hassleriana HOM05D004764 ORTHO05D005580 6.9e-128 461.1 310 78.7
COL.COLO4_25609 Corchorus olitorius HOM05D004764 ORTHO05D005580 9.0e-128 460.7 310 79.4
CAN.G308.66 Capsicum annuum HOM05D004764 ORTHO05D005580 1.2e-127 460.3 318 76.4
TAR369G1012 Trochodendron aralioides HOM05D004764 ORTHO05D005580 1.2e-127 460.3 310 78.7
Duzib106G0320 Durio zibethinus HOM05D004764 ORTHO05D005580 1.5e-127 459.9 310 79.7
MD02G1196300 Malus domestica HOM05D004764 ORTHO05D005580 2.0e-127 459.5 310 77.4
Medtr6g084580 Medicago truncatula HOM05D004764 ORTHO05D005580 2.0e-127 459.5 310 79.0
Psat1g037840 Pisum sativum HOM05D004764 ORTHO05D005580 2.6e-127 459.1 310 79.0
Ca_25497_v3 Cicer arietinum L. HOM05D004764 ORTHO05D005580 3.4e-127 458.8 310 79.4
Sopen03g006610 Solanum pennellii HOM05D004764 ORTHO05D005580 3.4e-127 458.8 318 76.4
CAN.G2159.1 Capsicum annuum HOM05D004764 ORTHO05D005580 9.9e-127 457.2 318 75.8
Ciclev10016032m.g Citrus clementina HOM05D004764 ORTHO05D005580 1.7e-126 456.4 310 77.4
Prupe.2G152400 Prunus persica HOM05D004764 ORTHO05D005580 1.7e-126 456.4 310 75.8
Thecc.10G137500 Theobroma cacao HOM05D004764 ORTHO05D005580 2.2e-126 456.1 310 78.7
Hund16007 Selenicereus undatus HOM05D004764 ORTHO05D005580 4.9e-126 454.9 310 77.7
Lj2g0017902 Lotus japonicus HOM05D004764 ORTHO05D005580 6.4e-126 454.5 310 78.7
PGSC0003DMG400006372 Solanum tuberosum HOM05D004764 ORTHO05D005580 6.4e-126 454.5 319 75.9
Lj1A432T27 Lonicera japonica HOM05D004764 ORTHO05D005580 8.4e-126 454.1 318 77.4
Lj1C949T1 Lonicera japonica HOM05D004764 ORTHO05D005580 8.4e-126 454.1 318 78.6
Gorai.011G278800 Gossypium raimondii HOM05D004764 ORTHO05D005580 1.1e-125 453.8 310 77.1
Glyma.09G184900 Glycine max HOM05D004764 ORTHO05D005580 1.4e-125 453.4 310 78.1
MD07G1124900 Malus domestica HOM05D004764 ORTHO05D005580 1.9e-125 453.0 310 75.5
Solyc04g071730.3 Solanum lycopersicum HOM05D004764 ORTHO05D005580 2.4e-125 452.6 319 75.5
Gohir.A10G228400 Gossypium hirsutum HOM05D004764 ORTHO05D005580 3.2e-125 452.2 310 76.8
Phvul.004G157700 Phaseolus vulgaris HOM05D004764 ORTHO05D005580 3.2e-125 452.2 310 77.1
VMungo0464G2049 Vigna mungo HOM05D004764 ORTHO05D005580 4.2e-125 451.8 310 77.4
Migut.F01566 Erythranthe guttata HOM05D004764 ORTHO05D005580 7.1e-125 451.1 319 75.9
Sopen04g027710 Solanum pennellii HOM05D004764 ORTHO05D005580 7.1e-125 451.1 319 75.2
Nitab4.5_0000344g0160 Nicotiana tabacum HOM05D004764 ORTHO05D005580 2.1e-124 449.5 318 75.5
Nitab4.5_0012769g0010 Nicotiana tabacum HOM05D004764 ORTHO05D005580 2.1e-124 449.5 318 75.2
Cc02_g20660 Coffea canephora HOM05D004764 ORTHO05D005580 2.7e-124 449.1 318 75.2
DCAR_011775 Daucus carota HOM05D004764 ORTHO05D005580 3.5e-124 448.7 318 74.8
CANSAT21G1253 Cannabis sativa HOM05D004764 ORTHO05D005580 4.6e-124 448.4 310 75.5
Lj1g0004796 Lotus japonicus HOM05D004764 ORTHO05D005580 7.9e-124 447.6 310 78.4
HanXRQChr12g0369401 Helianthus annuus HOM05D004764 ORTHO05D005580 1.0e-123 447.2 316 73.4
PGR142G0534 Punica granatum HOM05D004764 ORTHO05D005580 1.3e-123 446.8 311 77.8
Rhsim09G0171300 Rhododendron simsii HOM05D004764 ORTHO05D005580 1.3e-123 446.8 362 68.2
MSTRG.8305 Avicennia marina HOM05D004764 ORTHO05D005580 1.8e-123 446.4 318 74.2
Lalb_Chr22g0353041 Lupinus albus HOM05D004764 ORTHO05D005580 1.5e-122 443.4 310 76.8
Lalb_Chr14g0371191 Lupinus albus HOM05D004764 ORTHO05D005580 9.6e-122 440.7 310 76.5
MELO3C008270.2 Cucumis melo HOM05D004764 ORTHO05D005580 1.6e-121 439.9 310 75.2
SalBow6G7043 Salvia bowleyana HOM05D004764 ORTHO05D005580 1.6e-121 439.9 318 73.3
ECA233G3311 Erigeron canadensis HOM05D004764 ORTHO05D005580 3.7e-121 438.7 319 73.4
AL1G59680 Arabidopsis lyrata HOM05D004764 ORTHO05D005580 1.1e-120 437.2 311 74.6
EL10Ac2g04766 Beta vulgaris HOM05D004764 ORTHO05D005580 4.0e-120 435.3 310 74.8
SGA_v2.0_scaffold130G34221 Striga asiatica HOM05D004764 ORTHO05D005580 5.3e-120 434.9 318 72.6
ClCG11G006420 Citrullus lanatus HOM05D004764 ORTHO05D005580 6.9e-120 434.5 311 74.6
Sed0006926 Sechium edule HOM05D004764 ORTHO05D005580 1.2e-119 433.7 311 75.2
Sp1g38390 Schrenkiella parvula HOM05D004764 ORTHO05D005580 2.0e-119 433.0 310 73.2
CARHR041910 Cardamine hirsuta HOM05D004764 ORTHO05D005580 4.5e-119 431.8 310 72.9
Thhalv10011542m.g Eutrema salsugineum HOM05D004764 ORTHO05D005580 4.5e-119 431.8 310 73.5
PSO585G0029 Papaver somniferum HOM05D004764 ORTHO05D005580 4.5e-119 431.8 310 73.2
RcHm_v2.0_Chr1g0351821 Rosa chinensis HOM05D004764 ORTHO05D005580 7.6e-119 431.0 310 73.5
Aa31LG10G3070 Aethionema arabicum HOM05D004764 ORTHO05D005580 9.9e-119 430.6 310 73.2
arahy.Tifrunner.gnm1.ann1.BR1H5V Arachis hypogaea HOM05D004764 ORTHO05D005580 9.9e-119 430.6 310 73.2
FAN10G3109 Fragaria x ananassa HOM05D004764 ORTHO05D005580 1.3e-118 430.3 310 72.6
Ah.16g104720 Amaranthus hybridus HOM05D004764 ORTHO05D005580 2.2e-118 429.5 310 72.9
FvH4_7g12790 Fragaria vesca HOM05D004764 ORTHO05D005580 2.2e-118 429.5 310 72.6
FAN10G1216 Fragaria x ananassa HOM05D004764 ORTHO05D005580 1.9e-117 426.4 309 71.8
AT1G51740 Arabidopsis thaliana HOM05D004764 ORTHO05D005580 2.4e-117 426.0 312 74.0
Aqoxy1G00756 Aquilegia oxysepala HOM05D004764 ORTHO05D005580 1.2e-116 423.7 310 73.2
Carub.0001s4061 Capsella rubella HOM05D004764 ORTHO05D005580 2.7e-116 422.5 311 72.7
PSO384G2817 Papaver somniferum HOM05D004764 ORTHO05D005580 2.7e-116 422.5 310 72.9
BcaB02g11053 Brassica carinata HOM05D004764 ORTHO05D005580 3.5e-116 422.2 312 72.1
Ah.02g115950 Amaranthus hybridus HOM05D004764 ORTHO05D005580 4.6e-116 421.8 310 71.3
Aqoxy7G01280 Aquilegia oxysepala HOM05D004764 ORTHO05D005580 7.9e-116 421.0 312 73.4
arahy.Tifrunner.gnm1.ann1.V0Z2W7 Arachis hypogaea HOM05D004764 ORTHO05D005580 5.1e-115 418.3 310 71.9
Lsat_1_v5_gn_8_14200 Lactuca sativa HOM05D004764 ORTHO05D005580 1.5e-114 416.8 307 71.7
Eucgr.G03020 Eucalyptus grandis HOM05D004764 ORTHO05D005580 9.6e-114 414.1 310 73.9
Peaxi162Scf00064g00126 Petunia axillaris HOM05D004764 ORTHO05D005580 9.6e-114 414.1 318 70.4
FAN01G0026 Fragaria x ananassa HOM05D004764 ORTHO05D005580 1.6e-113 413.3 345 64.9
Peaxi162Scf00010g01114 Petunia axillaris HOM05D004764 ORTHO05D005580 8.2e-113 411.0 318 70.1
Gohir.D10G242400 Gossypium hirsutum HOM05D004764 ORTHO05D005580 1.7e-110 403.3 278 77.3
Actinidia00927 Actinidia chinensis HOM05D004764 ORTHO05D005580 3.8e-110 402.1 319 71.2
Solyc03g033850.3 Solanum lycopersicum HOM05D004764 ORTHO05D005580 4.9e-110 401.7 281 76.5
BolC6t35797H Brassica oleracea HOM05D004764 ORTHO05D005580 8.4e-110 401.0 294 72.1
A06p02240 Brassica napus HOM05D004764 ORTHO05D005580 1.9e-109 399.8 294 72.1
BcaB07g33630 Brassica carinata HOM05D004764 ORTHO05D005580 2.5e-109 399.4 297 71.4
Os12g0154400 Oryza sativa ssp. japonica HOM05D004764 ORTHO05D005580 2.5e-109 399.4 316 69.0
CsaV3_6G001590 Cucumis sativus L. HOM05D004764 ORTHO05D005580 3.2e-109 399.1 285 74.4
BraA06t23434Z Brassica rapa HOM05D004764 ORTHO05D005580 4.2e-109 398.7 294 71.8
Os04g0530400 Oryza sativa ssp. japonica HOM05D004764 ORTHO05D005580 5.5e-109 398.3 316 68.7
Zm00001eb429110 Zea mays HOM05D004764 ORTHO05D005580 7.1e-109 397.9 316 68.4
ATR0736G027 Amborella trichopoda HOM05D004764 ORTHO05D005580 6.0e-108 394.8 312 69.6
unitig_0.g2163 Utricularia gibba HOM05D004764 ORTHO05D005580 1.3e-107 393.7 321 67.6
Sabra10G0149400 Salix brachista HOM05D004764 ORTHO05D005580 6.7e-107 391.3 279 73.8
Haze_20561 Corylus avellana HOM05D004764 ORTHO05D005580 1.9e-106 389.8 262 77.1
Lsat_1_v5_gn_9_12660 Lactuca sativa HOM05D004764 ORTHO05D005580 1.3e-105 387.1 310 66.5
C06p07040 Brassica napus HOM05D004764 ORTHO05D005580 6.9e-104 381.3 286 70.3
BcaC08g43344 Brassica carinata HOM05D004764 ORTHO05D005580 1.2e-103 380.6 286 70.3
Sc11g0007530 Simmondsia chinensis HOM05D004764 ORTHO05D005580 5.0e-102 375.2 262 75.2
Oeu013001.1 Olea europaea HOM05D004764 ORTHO05D005580 2.1e-100 369.8 279 71.3
AUR62041843 Chenopodium quinoa HOM05D004764 ORTHO05D005580 3.9e-99 365.5 310 65.2
Glyma.07G091000 Glycine max HOM05D004764 ORTHO05D005580 3.9e-99 365.5 310 67.1
Nn5g27977 Nelumbo nucifera HOM05D004764 ORTHO05D005580 1.9e-98 363.2 310 67.1
FAN06G0806 Fragaria x ananassa HOM05D004764 ORTHO05D005580 3.7e-97 359.0 256 74.2
SEGI_31890 Sequoiadendron giganteum HOM05D004764 ORTHO05D005580 1.2e-95 354.0 314 61.5
AUR62032348 Chenopodium quinoa HOM05D004764 ORTHO05D005580 4.5e-95 352.1 262 69.8
Lj1C433T7 Lonicera japonica HOM05D004764 ORTHO05D005580 1.0e-94 350.9 256 73.8
SHI03532 Sapria himalayana HOM05D004764 ORTHO05D005580 2.1e-92 343.2 315 61.6
Nitab4.5_0011923g0010 Nicotiana tabacum HOM05D004764 ORTHO05D005580 1.7e-89 333.6 310 60.0
vmacro10073 Vaccinium macrocarpon HOM05D004764 ORTHO05D005580 4.8e-89 332.0 228 77.6
Lj1C435T9 Lonicera japonica HOM05D004764 ORTHO05D005580 9.4e-85 317.8 238 72.3
Potri.008G063100 Populus trichocarpa HOM05D004764 ORTHO05D005580 8.0e-84 314.7 221 73.3
HPP92_027811 Vanilla planifolia HOM05D004764 ORTHO05D005580 6.7e-83 311.6 310 56.1
Nitab4.5_0002828g0150 Nicotiana tabacum HOM05D004764 ORTHO05D005580 2.1e-76 290.0 391 48.8
TPR.G27934 Trifolium pratense HOM05D004764 ORTHO05D005580 2.7e-76 289.7 740 33.1
Mapoly0024s0083 Marchantia polymorpha HOM05D004764 ORTHO05D005580 3.3e-74 282.7 315 50.5
Pp3c6_24680 Physcomitrium patens HOM05D004764 ORTHO05D005580 8.5e-70 268.1 319 47.3
SMO356G0668 Selaginella moellendorffii HOM05D004764 ORTHO05D005580 1.1e-69 267.7 313 51.4
AagrBONN_evm.TU.Sc2ySwM_368.928 Anthoceros agrestis HOM05D004764 ORTHO05D005580 9.5e-61 238.0 292 49.0
Oeu032670.1 Olea europaea HOM05D004764 ORTHO05D005580 6.1e-60 235.3 178 75.3
CDE09G0086 Ceratophyllum demersum HOM05D004764 ORTHO05D005580 1.7e-54 217.2 185 67.0
Actinidia27825 Actinidia chinensis HOM05D004764 ORTHO05D005580 8.3e-49 198.4 150 76.7
C06p13300 Brassica napus HOM05D001194 ORTHO05D005580 1.4e-48 197.6 266 50.0
PGSC0003DMG400022548 Solanum tuberosum HOM05D004764 ORTHO05D005580 3.5e-47 193.0 122 87.7
Zm00001eb427200 Zea mays HOM05D004764 ORTHO05D005580 5.0e-46 189.1 156 69.9
PSO339G3467 Papaver somniferum HOM05D004764 ORTHO05D005580 1.1e-45 188.0 143 72.0
Glyma.17G199500 Glycine max HOM05D004764 ORTHO05D005580 2.6e-42 176.8 120 84.2
Sabra08G0046500 Salix brachista HOM05D004764 ORTHO05D005580 2.7e-39 166.8 244 44.3
BolC6t36490H Brassica oleracea HOM05D001194 ORTHO05D000015 3.6e-36 156.4 265 43.0
HPP92_004405 Vanilla planifolia HOM05D004764 ORTHO05D005580 4.0e-35 152.9 121 61.2
Eucgr.L03566 Eucalyptus grandis HOM05D004764 ORTHO05D005580 1.7e-30 137.5 91 75.8
MCO05G144 Micromonas commoda HOM05D004764 ORTHO05D005580 5.1e-30 136.0 309 33.0
BcaC08g43937 Brassica carinata HOM05D001194 ORTHO05D004786 3.6e-28 129.8 129 62.0
vmacro10891 Vaccinium macrocarpon HOM05D004764 ORTHO05D005580 2.4e-27 127.1 153 58.2
Actinidia13909 Actinidia chinensis HOM05D004764 ORTHO05D005580 4.4e-26 122.9 109 67.0
vmacro10074 Vaccinium macrocarpon HOM05D004764 ORTHO05D005580 5.8e-26 122.5 112 58.0
SEGI_41058 Sequoiadendron giganteum HOM05D004764 ORTHO05D005580 4.9e-25 119.4 89 65.2
CBR_g29687 Chara braunii HOM05D004764 ORTHO05D005580 1.4e-24 117.9 93 66.7
BcaC08g43936 Brassica carinata HOM05D004764 ORTHO05D005580 5.4e-24 115.9 100 59.0
Actinidia13908 Actinidia chinensis HOM05D004764 ORTHO05D005580 3.2e-16 90.1 58 74.1
Cre17.g711450 Chlamydomonas reinhardtii HOM05D004764 ORTHO05D005580 3.0e-14 83.6 350 25.7
Ah.16g102910 Amaranthus hybridus HOM05D004764 ORTHO05D005580 5.1e-14 82.8 57 73.7
Sc11g0007520 Simmondsia chinensis HOM05D004764 ORTHO05D005580 4.8e-12 76.3 84 54.8
PRCOL_00004763 Prasinoderma coloniale HOM05D001748 ORTHO05D001759 5.4e-08 62.8 121 38.8
BraA05t20843Z Brassica rapa HOM05D000051 ORTHO05D000015 3.9e-06 56.6 32 75.0


User provided reference genes

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