Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01016337001 Vitis vinifera HOM05D005240 ORTHO05D006471 5.6e-112 407.5 193 100.0
CSS0026127 Camellia sinensis var. sinensis HOM05D005240 ORTHO05D006471 1.3e-84 316.6 182 78.6
Thecc.10G068200 Theobroma cacao HOM05D005240 ORTHO05D006471 4.9e-84 314.7 193 74.1
Cc09_g02730 Coffea canephora HOM05D005240 ORTHO05D006471 4.6e-82 308.1 183 74.9
Gohir.A05G344500 Gossypium hirsutum HOM05D005240 ORTHO05D006471 6.1e-82 307.8 187 74.3
Nitab4.5_0000061g0160 Nicotiana tabacum HOM05D005240 ORTHO05D006471 1.0e-81 307.0 195 72.8
PGR044G1235 Punica granatum HOM05D005240 ORTHO05D006471 5.1e-81 304.7 185 76.8
Gorai.012G093700 Gossypium raimondii HOM05D005240 ORTHO05D006471 4.3e-80 301.6 180 74.4
TWI38G0703 Tripterygium wilfordii HOM05D005240 ORTHO05D006471 4.3e-80 301.6 181 77.3
Gohir.D04G083000 Gossypium hirsutum HOM05D005240 ORTHO05D006471 9.7e-80 300.4 180 74.4
Nitab4.5_0001721g0020 Nicotiana tabacum HOM05D005240 ORTHO05D006471 1.3e-79 300.1 194 72.2
Nn2g13000 Nelumbo nucifera HOM05D005240 ORTHO05D006471 1.6e-79 299.7 193 70.5
Solyc10g005830.3 Solanum lycopersicum HOM05D005240 ORTHO05D006471 1.6e-79 299.7 193 71.0
Sopen10g001790 Solanum pennellii HOM05D005240 ORTHO05D006471 2.2e-79 299.3 193 71.0
RcHm_v2.0_Chr1g0364101 Rosa chinensis HOM05D005240 ORTHO05D006471 2.8e-79 298.9 182 75.3
TWI15G1019 Tripterygium wilfordii HOM05D005240 ORTHO05D006471 2.8e-79 298.9 180 74.4
arahy.Tifrunner.gnm1.ann1.9PA5H9 Arachis hypogaea HOM05D005240 ORTHO05D006471 3.7e-79 298.5 178 74.7
arahy.Tifrunner.gnm1.ann1.CT8M8A Arachis hypogaea HOM05D005240 ORTHO05D006471 4.8e-79 298.1 178 74.2
Lj5g0013716 Lotus japonicus HOM05D005240 ORTHO05D006471 4.8e-79 298.1 183 72.1
Eucgr.J01124 Eucalyptus grandis HOM05D005240 ORTHO05D006471 6.3e-79 297.7 181 75.1
MSTRG.355 Avicennia marina HOM05D005240 ORTHO05D006471 2.4e-78 295.8 186 72.0
Migut.F01799 Erythranthe guttata HOM05D005240 ORTHO05D006471 4.1e-78 295.0 183 71.6
Prupe.2G218200 Prunus persica HOM05D005240 ORTHO05D006471 9.0e-78 293.9 183 73.2
Actinidia38251 Actinidia chinensis HOM05D005240 ORTHO05D006471 1.5e-77 293.1 193 71.0
Hma1.2p1_0453F.1_g156180 Hydrangea macrophylla HOM05D005240 ORTHO05D006471 1.5e-77 293.1 179 73.7
Medtr1g095890 Medicago truncatula HOM05D005240 ORTHO05D006471 2.6e-77 292.4 181 74.0
QL08p056831 Quercus lobata HOM05D005240 ORTHO05D006471 2.6e-77 292.4 181 73.5
CiPaw.01G276500 Carya illinoinensis HOM05D005240 ORTHO05D006471 3.4e-77 292.0 194 68.6
Duzib114G0729 Durio zibethinus HOM05D005240 ORTHO05D006471 4.5e-77 291.6 187 70.6
Manes.10G042700 Manihot esculenta HOM05D005240 ORTHO05D006471 5.9e-77 291.2 193 69.4
Psat6g186000 Pisum sativum HOM05D005240 ORTHO05D006471 5.9e-77 291.2 176 74.4
vmacro17506 Vaccinium macrocarpon HOM05D005240 ORTHO05D006471 7.7e-77 290.8 193 72.0
Lalb_Chr06g0162141 Lupinus albus HOM05D005240 ORTHO05D006471 6.5e-76 287.7 178 71.3
MD07G1179100 Malus domestica HOM05D005240 ORTHO05D006471 6.5e-76 287.7 182 74.2
arahy.Tifrunner.gnm1.ann1.D7L05R Arachis hypogaea HOM05D005240 ORTHO05D006471 8.5e-76 287.3 190 69.5
Peaxi162Scf00373g00310 Petunia axillaris HOM05D005240 ORTHO05D006471 8.5e-76 287.3 185 71.4
FvH4_7g20150 Fragaria vesca HOM05D005240 ORTHO05D006471 1.4e-75 286.6 182 72.5
FAN06G0525 Fragaria x ananassa HOM05D005240 ORTHO05D006471 1.4e-75 286.6 182 72.5
Duzib128G0461 Durio zibethinus HOM05D005240 ORTHO05D006471 3.2e-75 285.4 193 68.4
HanXRQChr07g0200441 Helianthus annuus HOM05D005240 ORTHO05D006471 7.2e-75 284.3 183 70.5
Ca_10594_v3 Cicer arietinum L. HOM05D005240 ORTHO05D006471 9.4e-75 283.9 176 75.0
Ciclev10032844m.g Citrus clementina HOM05D005240 ORTHO05D006471 1.6e-74 283.1 160 80.6
Hund19334 Selenicereus undatus HOM05D005240 ORTHO05D006471 1.6e-74 283.1 180 72.2
Aqoxy4G03197 Aquilegia oxysepala HOM05D005240 ORTHO05D006471 2.7e-74 282.3 182 70.9
Sc14g0005480 Simmondsia chinensis HOM05D005240 ORTHO05D006471 4.6e-74 281.6 181 70.7
Thecc.10G068300 Theobroma cacao HOM05D005240 ORTHO05D006471 6.1e-74 281.2 183 70.5
FAN03G2612 Fragaria x ananassa HOM05D005240 ORTHO05D006471 7.9e-74 280.8 182 71.4
Lsat_1_v5_gn_2_115080 Lactuca sativa HOM05D005240 ORTHO05D006471 7.9e-74 280.8 182 69.2
FAN10G3611 Fragaria x ananassa HOM05D005240 ORTHO05D006471 1.0e-73 280.4 182 70.9
THA.LOC104803452 Tarenaya hassleriana HOM05D005240 ORTHO05D006471 1.0e-73 280.4 185 69.7
DCAR_015276 Daucus carota HOM05D005240 ORTHO05D006471 1.4e-73 280.0 181 70.2
Glyma.10G213900 Glycine max HOM05D005240 ORTHO05D006471 1.8e-73 279.6 178 71.3
TAR636G2864 Trochodendron aralioides HOM05D005240 ORTHO05D006471 1.8e-73 279.6 193 68.4
PSO210G2142 Papaver somniferum HOM05D005240 ORTHO05D006471 2.3e-73 279.3 182 71.4
Carub.0004s1759 Capsella rubella HOM05D005240 ORTHO05D006471 3.0e-73 278.9 182 68.1
Atru.chr12.634 Acer truncatum HOM05D005240 ORTHO05D006471 3.9e-73 278.5 183 72.1
Glyma.10G214000 Glycine max HOM05D005240 ORTHO05D006471 3.3e-72 275.4 178 71.3
Phvul.007G091800 Phaseolus vulgaris HOM05D005240 ORTHO05D006471 3.3e-72 275.4 178 68.5
VMungo0720G3076 Vigna mungo HOM05D005240 ORTHO05D006471 1.3e-71 273.5 175 68.0
Potri.010G217500 Populus trichocarpa HOM05D005240 ORTHO05D006471 3.7e-71 271.9 194 66.5
AL4G31940 Arabidopsis lyrata HOM05D005240 ORTHO05D006471 6.3e-71 271.2 182 68.1
ECA238G3142 Erigeron canadensis HOM05D005240 ORTHO05D006471 8.2e-71 270.8 184 69.0
Zm00001eb148920 Zea mays HOM05D005240 ORTHO05D006471 1.1e-70 270.4 181 66.9
Rhsim10G0162300 Rhododendron simsii HOM05D005240 ORTHO05D006471 2.4e-70 269.2 159 76.7
ATR1159G086 Amborella trichopoda HOM05D005240 ORTHO05D006471 9.1e-70 267.3 193 63.2
AT2G35820 Arabidopsis thaliana HOM05D005240 ORTHO05D006471 1.5e-69 266.5 183 66.7
ECA238G0657 Erigeron canadensis HOM05D005240 ORTHO05D006471 1.5e-69 266.5 177 69.5
Thhalv10017274m.g Eutrema salsugineum HOM05D005240 ORTHO05D006471 1.5e-69 266.5 177 67.8
Sabra10G0168200 Salix brachista HOM05D005240 ORTHO05D006471 1.5e-69 266.5 194 64.9
CANSAT56G3849 Cannabis sativa HOM05D005240 ORTHO05D006471 2.6e-69 265.8 184 65.8
SalBow3G0637 Salvia bowleyana HOM05D005240 ORTHO05D006471 3.4e-69 265.4 167 73.1
Ah.16g108220 Amaranthus hybridus HOM05D005240 ORTHO05D006471 7.7e-69 264.2 190 67.4
COL.COLO4_23732 Corchorus olitorius HOM05D005240 ORTHO05D006471 1.3e-68 263.5 176 70.5
Sp4g18090 Schrenkiella parvula HOM05D005240 ORTHO05D006471 1.3e-68 263.5 181 66.3
Medtr1g095900 Medicago truncatula HOM05D005240 ORTHO05D006471 2.2e-68 262.7 175 68.6
CANSAT56G2007 Cannabis sativa HOM05D005240 ORTHO05D006471 2.9e-68 262.3 184 65.2
DCAR_019135 Daucus carota HOM05D005240 ORTHO05D006471 3.8e-68 261.9 174 70.1
BcaB06g28877 Brassica carinata HOM05D005240 ORTHO05D006471 1.1e-67 260.4 182 65.4
MBI16_g46203_MAGBIO Magnolia biondii HOM05D005240 ORTHO05D006471 1.4e-67 260.0 202 62.4
HPP92_007585 Vanilla planifolia HOM05D005240 ORTHO05D006471 4.2e-67 258.5 179 64.2
SGA_v2.0_scaffold122G33245 Striga asiatica HOM05D005240 ORTHO05D006471 7.2e-67 257.7 164 69.5
BcaC02g07666 Brassica carinata HOM05D005240 ORTHO05D006471 9.4e-67 257.3 183 63.4
PSO170G1537 Papaver somniferum HOM05D005240 ORTHO05D006471 1.2e-66 256.9 180 66.7
A04p27280 Brassica napus HOM05D005240 ORTHO05D006471 1.6e-66 256.5 182 64.8
BraA04t18226Z Brassica rapa HOM05D005240 ORTHO05D006471 1.6e-66 256.5 182 64.8
CDE07G1884 Ceratophyllum demersum HOM05D005240 ORTHO05D006471 1.6e-66 256.5 191 64.9
AT2G35830 Arabidopsis thaliana HOM05D005240 ORTHO05D006471 7.9e-66 254.2 177 65.5
CARHR130080 Cardamine hirsuta HOM05D005240 ORTHO05D006471 3.0e-65 252.3 176 65.9
AT2G35810 Arabidopsis thaliana HOM05D005240 ORTHO05D006471 5.1e-65 251.5 182 62.6
PSO210G3376 Papaver somniferum HOM05D005240 ORTHO05D006471 5.1e-65 251.5 181 61.3
C04p64800 Brassica napus HOM05D005240 ORTHO05D006471 1.1e-64 250.4 183 61.7
BolC4t27957H Brassica oleracea HOM05D005240 ORTHO05D006471 1.1e-64 250.4 183 61.7
AL4G31930 Arabidopsis lyrata HOM05D005240 ORTHO05D006471 2.0e-64 249.6 179 63.7
AUR62020787 Chenopodium quinoa HOM05D005240 ORTHO05D006471 9.7e-64 247.3 193 62.7
Os01g0833200 Oryza sativa ssp. japonica HOM05D005240 ORTHO05D006471 2.8e-63 245.7 180 65.6
Aa31LG7G14960 Aethionema arabicum HOM05D005240 ORTHO05D006471 3.1e-62 242.3 162 71.0
AagrBONN_evm.TU.Sc2ySwM_117.2297 Anthoceros agrestis HOM05D005240 ORTHO05D006471 9.1e-62 240.7 182 60.4
MELO3C023691.2 Cucumis melo HOM05D005240 ORTHO05D006471 2.2e-60 236.1 196 56.6
CAN.G492.51 Capsicum annuum HOM05D005240 ORTHO05D006471 2.9e-60 235.7 165 67.3
AUR62043640 Chenopodium quinoa HOM05D005240 ORTHO05D006471 1.1e-59 233.8 175 65.1
Aa31LG7G14930 Aethionema arabicum HOM05D005240 ORTHO05D006471 1.9e-59 233.0 178 64.0
Sc09g0006770 Simmondsia chinensis HOM05D005240 ORTHO05D006471 4.2e-59 231.9 150 69.3
Dinv31345 Davidia involucrata HOM05D005240 ORTHO05D006471 9.4e-59 230.7 137 77.4
PSO210G2334 Papaver somniferum HOM05D005240 ORTHO05D006471 1.2e-58 230.3 161 64.0
Sed0009768 Sechium edule HOM05D005240 ORTHO05D006471 2.7e-58 229.2 183 59.0
BcaB06g28875 Brassica carinata HOM05D005240 ORTHO05D006471 1.4e-57 226.9 163 64.4
CsaV3_7G024930 Cucumis sativus L. HOM05D005240 ORTHO05D006471 2.3e-57 226.1 181 56.9
Pp3c27_2400 Physcomitrium patens HOM05D005240 ORTHO05D006471 2.3e-57 226.1 181 57.5
Mapoly0113s0026 Marchantia polymorpha HOM05D005240 ORTHO05D006471 2.0e-56 223.0 191 55.5
Lj8C95T7 Lonicera japonica HOM05D005240 ORTHO05D006471 2.6e-53 212.6 133 69.9
Sed0007370 Sechium edule HOM05D005240 ORTHO05D006471 1.0e-52 210.7 171 56.7
TPR.G10956 Trifolium pratense HOM05D005240 ORTHO05D006471 1.3e-52 210.3 133 71.4
Haze_16935 Corylus avellana HOM05D005240 ORTHO05D006471 6.5e-52 208.0 175 60.0
TPR.G15475 Trifolium pratense HOM05D005240 ORTHO05D006471 6.5e-52 208.0 133 66.9
SMO147G0062 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 2.3e-49 199.5 168 54.2
Oeu057235.1 Olea europaea HOM05D005240 ORTHO05D006471 4.0e-49 198.7 112 78.6
SMO330G0010 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 6.8e-49 198.0 163 55.2
SMO330G0030 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 2.6e-48 196.1 168 54.2
CBR_g12600 Chara braunii HOM05D005240 ORTHO05D006471 3.7e-47 192.2 191 49.7
SMO330G0038 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 2.4e-46 189.5 162 54.3
SMO147G0059 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 2.7e-45 186.0 163 52.1
arahy.Tifrunner.gnm1.ann1.ZWA97R Arachis hypogaea HOM05D005240 ORTHO05D006471 3.0e-41 172.6 118 66.9
SMO257G0002 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 2.6e-40 169.5 136 55.1
Cre08.g378650 Chlamydomonas reinhardtii HOM05D005240 ORTHO05D006471 8.3e-39 164.5 182 47.8
arahy.Tifrunner.gnm1.ann1.65Y6VJ Arachis hypogaea HOM05D005240 ORTHO05D006471 1.8e-38 163.3 178 47.8
CARHR130090 Cardamine hirsuta HOM05D005240 ORTHO05D006471 9.1e-38 161.0 114 64.0
SMO330G0050 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 2.0e-37 159.8 125 57.6
MCO11G764 Micromonas commoda HOM05D005240 ORTHO05D006471 7.7e-37 157.9 188 44.7
SMO330G0006 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 7.7e-37 157.9 168 48.2
ClCG09G009820 Citrullus lanatus HOM05D005240 ORTHO05D006471 3.8e-36 155.6 180 45.6
unitig_0.g188 Utricularia gibba HOM05D005240 ORTHO05D006471 8.9e-33 144.4 102 64.7
FAN01G3056 Fragaria x ananassa HOM05D005240 ORTHO05D006471 1.8e-30 136.7 87 71.3
PRCOL_00006731 Prasinoderma coloniale HOM05D005240 ORTHO05D006471 1.2e-24 117.5 187 36.9
SMO147G0342 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 2.7e-21 106.3 88 52.3
Nitab4.5_0011688g0030 Nicotiana tabacum HOM05D005240 ORTHO05D006471 1.7e-20 103.6 117 45.3
Lj8C95T8 Lonicera japonica HOM05D005240 ORTHO05D006471 1.9e-14 83.6 57 75.4
Cpa.g.sc53.24 Carica papaya HOM05D005240 ORTHO05D006471 8.6e-12 74.7 48 68.8
SMO330G0037 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 1.1e-09 67.8 53 56.6
Os01g0833150 Oryza sativa ssp. japonica HOM05D005240 ORTHO05D006471 2.3e-09 66.6 42 69.0
TPR.G38077 Trifolium pratense HOM05D005240 ORTHO05D006471 8.9e-09 64.7 39 71.8
TPR.G970 Trifolium pratense HOM05D005240 ORTHO05D006471 1.2e-08 64.3 41 68.3
CAN.G1302.2 Capsicum annuum HOM05D005240 ORTHO05D115732 3.4e-08 62.8 108 32.4
SEGI_21412 Sequoiadendron giganteum HOM05D005240 ORTHO05D006471 2.9e-07 59.7 50 58.0


User provided reference genes

Program Settings