Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01016316001 Vitis vinifera HOM05D005690 ORTHO05D007075 5.9e-135 484.2 242 100.0
Dinv11797 Davidia involucrata HOM05D005690 ORTHO05D007075 1.9e-109 399.4 242 81.0
Manes.07G103000 Manihot esculenta HOM05D005690 ORTHO05D007075 2.6e-106 389.0 242 79.3
Potri.008G042800 Populus trichocarpa HOM05D005690 ORTHO05D007075 2.4e-104 382.5 239 79.1
Prupe.2G217200 Prunus persica HOM05D005690 ORTHO05D007075 3.2e-104 382.1 242 77.3
CiPaw.02G175700 Carya illinoinensis HOM05D005690 ORTHO05D007075 4.1e-104 381.7 244 78.7
Thecc.10G069500 Theobroma cacao HOM05D005690 ORTHO05D007075 7.1e-104 380.9 242 76.9
Potri.010G219400 Populus trichocarpa HOM05D005690 ORTHO05D007075 1.2e-103 380.2 239 78.7
FAN10G0816 Fragaria x ananassa HOM05D005690 ORTHO05D007075 6.0e-103 377.9 243 76.1
MD01G1111700 Malus domestica HOM05D005690 ORTHO05D007075 7.8e-103 377.5 242 76.4
MD07G1177900 Malus domestica HOM05D005690 ORTHO05D007075 1.0e-102 377.1 242 75.6
Gohir.D06G176800 Gossypium hirsutum HOM05D005690 ORTHO05D007075 6.6e-102 374.4 242 76.0
Gorai.010G204700 Gossypium raimondii HOM05D005690 ORTHO05D007075 6.6e-102 374.4 242 76.0
Gohir.A06G178200 Gossypium hirsutum HOM05D005690 ORTHO05D007075 1.9e-101 372.9 242 75.6
FvH4_7g20020 Fragaria vesca HOM05D005690 ORTHO05D007075 4.3e-101 371.7 243 75.3
FAN03G1698 Fragaria x ananassa HOM05D005690 ORTHO05D007075 4.3e-101 371.7 243 75.3
FAN06G0212 Fragaria x ananassa HOM05D005690 ORTHO05D007075 4.3e-101 371.7 243 75.3
TAR633G2147 Trochodendron aralioides HOM05D005690 ORTHO05D007075 7.3e-101 370.9 242 77.7
Sabra08G0029500 Salix brachista HOM05D005690 ORTHO05D007075 9.5e-101 370.5 249 73.5
TAR636G2049 Trochodendron aralioides HOM05D005690 ORTHO05D007075 9.5e-101 370.5 246 73.6
FAN01G0973 Fragaria x ananassa HOM05D005690 ORTHO05D007075 1.2e-100 370.2 243 74.9
Duzib114G0556 Durio zibethinus HOM05D005690 ORTHO05D007075 2.1e-100 369.4 242 74.4
COL.COLO4_32034 Corchorus olitorius HOM05D005690 ORTHO05D007075 8.1e-100 367.5 243 75.7
RcHm_v2.0_Chr1g0363981 Rosa chinensis HOM05D005690 ORTHO05D007075 1.8e-99 366.3 245 73.9
Ciclev10032614m.g Citrus clementina HOM05D005690 ORTHO05D007075 2.3e-99 365.9 242 76.0
Cfa001602 Carpinus fangiana HOM05D005690 ORTHO05D007075 5.2e-99 364.8 243 75.7
Potri.010G219000 Populus trichocarpa HOM05D005690 ORTHO05D007075 2.0e-98 362.8 242 74.4
Haze_16926 Corylus avellana HOM05D005690 ORTHO05D007075 3.4e-98 362.1 243 76.1
Nitab4.5_0000476g0050 Nicotiana tabacum HOM05D005690 ORTHO05D007075 5.8e-98 361.3 242 73.6
Cpa.g.sc53.43 Carica papaya HOM05D005690 ORTHO05D007075 1.7e-97 359.8 242 75.2
QL08p056659 Quercus lobata HOM05D005690 ORTHO05D007075 2.9e-97 359.0 243 73.7
Atru.chr12.697 Acer truncatum HOM05D005690 ORTHO05D007075 3.7e-97 358.6 243 74.5
Glyma.17G183500 Glycine max HOM05D005690 ORTHO05D007075 3.2e-96 355.5 242 73.1
Hma1.2p1_2080F.1_g313490 Hydrangea macrophylla HOM05D005690 ORTHO05D007075 5.4e-96 354.8 255 71.0
MSTRG.373 Avicennia marina HOM05D005690 ORTHO05D007075 9.2e-96 354.0 242 74.4
Atru.chr12.670 Acer truncatum HOM05D005690 ORTHO05D007075 1.6e-95 353.2 242 74.0
Cc02_g11390 Coffea canephora HOM05D005690 ORTHO05D007075 1.6e-95 353.2 243 75.3
THA.LOC104802837 Tarenaya hassleriana HOM05D005690 ORTHO05D007075 3.5e-95 352.1 243 74.5
VMungo0464G0948 Vigna mungo HOM05D005690 ORTHO05D007075 6.0e-95 351.3 242 71.9
CAN.G694.84 Capsicum annuum HOM05D005690 ORTHO05D007075 7.8e-95 350.9 242 70.7
Eucgr.J01111 Eucalyptus grandis HOM05D005690 ORTHO05D007075 1.3e-94 350.1 245 73.5
Nitab4.5_0012288g0020 Nicotiana tabacum HOM05D005690 ORTHO05D007075 1.3e-94 350.1 242 71.1
CANSAT56G3535 Cannabis sativa HOM05D005690 ORTHO05D007075 1.7e-94 349.7 242 74.0
Sopen05g034500 Solanum pennellii HOM05D005690 ORTHO05D007075 1.7e-94 349.7 242 71.5
Solyc05g056090.3 Solanum lycopersicum HOM05D005690 ORTHO05D007075 2.3e-94 349.4 242 71.5
Ca_04676_v3 Cicer arietinum L. HOM05D005690 ORTHO05D007075 3.0e-94 349.0 251 72.5
Lj2g0014971 Lotus japonicus HOM05D005690 ORTHO05D007075 3.9e-94 348.6 252 70.2
Lalb_Chr19g0129571 Lupinus albus HOM05D005690 ORTHO05D007075 5.1e-94 348.2 244 73.8
Peaxi162Scf00108g00166 Petunia axillaris HOM05D005690 ORTHO05D007075 5.1e-94 348.2 242 70.7
Hma1.2p1_0453F.1_g156020 Hydrangea macrophylla HOM05D005690 ORTHO05D007075 1.9e-93 346.3 219 77.6
Sabra10G0169300 Salix brachista HOM05D005690 ORTHO05D007075 2.5e-93 345.9 218 78.4
Peaxi162Scf01175g00023 Petunia axillaris HOM05D005690 ORTHO05D007075 5.6e-93 344.7 231 72.7
Hund19342 Selenicereus undatus HOM05D005690 ORTHO05D007075 7.3e-93 344.4 242 71.5
ECA232G2854 Erigeron canadensis HOM05D005690 ORTHO05D007075 9.6e-93 344.0 246 71.1
Phvul.004G075000 Phaseolus vulgaris HOM05D005690 ORTHO05D007075 3.6e-92 342.0 242 70.2
PGSC0003DMG400023460 Solanum tuberosum HOM05D005690 ORTHO05D007075 4.7e-92 341.7 242 69.4
MELO3C002879.2 Cucumis melo HOM05D005690 ORTHO05D007075 8.1e-92 340.9 242 73.6
arahy.Tifrunner.gnm1.ann1.08HL34 Arachis hypogaea HOM05D005690 ORTHO05D007075 2.4e-91 339.3 236 73.3
Nn2g13015 Nelumbo nucifera HOM05D005690 ORTHO05D007075 2.4e-91 339.3 218 77.5
CsaV3_5G025890 Cucumis sativus L. HOM05D005690 ORTHO05D007075 3.1e-91 339.0 242 72.7
arahy.Tifrunner.gnm1.ann1.8E9GH8 Arachis hypogaea HOM05D005690 ORTHO05D007075 4.0e-91 338.6 235 73.2
TWI38G1302 Tripterygium wilfordii HOM05D005690 ORTHO05D007075 6.8e-91 337.8 243 69.5
Aa31LG9G7550 Aethionema arabicum HOM05D005690 ORTHO05D007075 8.9e-91 337.4 242 71.1
Nitab4.5_0000233g0230 Nicotiana tabacum HOM05D005690 ORTHO05D007075 8.9e-91 337.4 213 76.5
Nitab4.5_0009003g0010 Nicotiana tabacum HOM05D005690 ORTHO05D007075 2.6e-90 335.9 215 74.9
TPR.G36634 Trifolium pratense HOM05D005690 ORTHO05D007075 2.2e-89 332.8 254 68.5
Rhsim09G0153300 Rhododendron simsii HOM05D005690 ORTHO05D007075 2.9e-89 332.4 221 72.9
PGR044G2452 Punica granatum HOM05D005690 ORTHO05D007075 3.8e-89 332.0 243 70.4
Lsat_1_v5_gn_9_67140 Lactuca sativa HOM05D005690 ORTHO05D007075 2.4e-88 329.3 246 67.5
AT2G35790 Arabidopsis thaliana HOM05D005690 ORTHO05D007075 3.2e-88 328.9 245 70.2
Migut.F01989 Erythranthe guttata HOM05D005690 ORTHO05D007075 3.2e-88 328.9 244 71.7
Carub.0004s1755 Capsella rubella HOM05D005690 ORTHO05D007075 7.1e-88 327.8 245 70.6
AL4G31900 Arabidopsis lyrata HOM05D005690 ORTHO05D007075 1.2e-87 327.0 247 69.2
HanXRQChr09g0246501 Helianthus annuus HOM05D005690 ORTHO05D007075 1.6e-87 326.6 246 67.9
Sed0019941 Sechium edule HOM05D005690 ORTHO05D007075 3.5e-87 325.5 238 71.0
CARHR130040 Cardamine hirsuta HOM05D005690 ORTHO05D007075 1.3e-86 323.6 247 68.8
MBI05_g11579_MAGBIO Magnolia biondii HOM05D005690 ORTHO05D007075 1.7e-86 323.2 233 71.2
Rhsim03G0123000 Rhododendron simsii HOM05D005690 ORTHO05D007075 3.0e-86 322.4 219 73.1
PSO339G2382 Papaver somniferum HOM05D005690 ORTHO05D007075 5.1e-86 321.6 245 68.2
AUR62027946 Chenopodium quinoa HOM05D005690 ORTHO05D007075 6.6e-86 321.2 247 66.8
PSO384G2564 Papaver somniferum HOM05D005690 ORTHO05D007075 8.7e-86 320.9 245 68.6
A04p27260 Brassica napus HOM05D005690 ORTHO05D007075 1.1e-85 320.5 251 66.9
Sed0011214 Sechium edule HOM05D005690 ORTHO05D007075 1.5e-85 320.1 242 69.8
Medtr6g033405 Medicago truncatula HOM05D005690 ORTHO05D007075 1.9e-85 319.7 204 77.0
AUR62020766 Chenopodium quinoa HOM05D005690 ORTHO05D007075 4.3e-85 318.5 244 67.2
Aqoxy6G02013 Aquilegia oxysepala HOM05D005690 ORTHO05D007075 7.3e-85 317.8 244 68.4
vmacro04884 Vaccinium macrocarpon HOM05D005690 ORTHO05D007075 1.3e-84 317.0 217 71.0
SGA_v2.0_scaffold28G12052 Striga asiatica HOM05D005690 ORTHO05D007075 3.6e-84 315.5 242 71.1
BraA04t18224Z Brassica rapa HOM05D005690 ORTHO05D007075 4.8e-84 315.1 252 66.7
BolC4t27955H Brassica oleracea HOM05D005690 ORTHO05D007075 6.2e-84 314.7 247 68.8
unitig_0.g529 Utricularia gibba HOM05D005690 ORTHO05D007075 1.1e-83 313.9 206 72.8
Thhalv10017166m.g Eutrema salsugineum HOM05D005690 ORTHO05D007075 1.4e-83 313.5 246 66.7
SalBow3G1299 Salvia bowleyana HOM05D005690 ORTHO05D007075 3.1e-83 312.4 242 65.7
C04p64770 Brassica napus HOM05D005690 ORTHO05D007075 5.3e-83 311.6 250 66.8
Sp4g18050 Schrenkiella parvula HOM05D005690 ORTHO05D007075 5.3e-83 311.6 246 67.9
BcaB06g28872 Brassica carinata HOM05D005690 ORTHO05D007075 2.0e-82 309.7 251 66.1
HPP92_003607 Vanilla planifolia HOM05D005690 ORTHO05D007075 2.6e-82 309.3 197 75.6
SalBow4G1295 Salvia bowleyana HOM05D005690 ORTHO05D007075 4.4e-82 308.5 231 68.4
ATR1159G074 Amborella trichopoda HOM05D005690 ORTHO05D007075 7.6e-82 307.8 234 67.5
BcaC01g05707 Brassica carinata HOM05D005690 ORTHO05D007075 7.6e-82 307.8 245 68.6
C03p22980 Brassica napus HOM05D005690 ORTHO05D007075 7.6e-82 307.8 245 68.6
A03p19730 Brassica napus HOM05D005690 ORTHO05D007075 2.2e-81 306.2 247 66.8
HanXRQChr17g0563371 Helianthus annuus HOM05D005690 ORTHO05D007075 2.9e-81 305.8 189 78.3
EL10Ac2g03578 Beta vulgaris HOM05D005690 ORTHO05D007075 1.2e-79 300.4 220 70.5
ClCG09G020510 Citrullus lanatus HOM05D005690 ORTHO05D007075 1.3e-78 297.0 217 70.5
CDE04G0636 Ceratophyllum demersum HOM05D005690 ORTHO05D007075 1.7e-78 296.6 195 74.9
Eucgr.J01110 Eucalyptus grandis HOM05D005690 ORTHO05D007075 1.7e-78 296.6 235 62.6
Ah.16g108410 Amaranthus hybridus HOM05D005690 ORTHO05D007075 3.0e-78 295.8 225 68.0
BcaB01g03881 Brassica carinata HOM05D005690 ORTHO05D007075 1.5e-77 293.5 251 64.9
Zm00001eb064810 Zea mays HOM05D005690 ORTHO05D007075 3.6e-76 288.9 220 67.3
BcaC02g07668 Brassica carinata HOM05D005690 ORTHO05D007075 3.4e-74 282.3 216 69.4
CSS0000246 Camellia sinensis var. sinensis HOM05D005690 ORTHO05D007075 3.8e-73 278.9 203 69.5
Os03g0853800 Oryza sativa ssp. japonica HOM05D005690 ORTHO05D007075 1.0e-70 270.8 164 80.5
CDE07G1130 Ceratophyllum demersum HOM05D005690 ORTHO05D007075 4.3e-69 265.4 195 68.2
SEGI_15078 Sequoiadendron giganteum HOM05D005690 ORTHO05D007075 2.5e-64 249.6 192 63.0
CiPaw.01G275500 Carya illinoinensis HOM05D005690 ORTHO05D007075 3.7e-60 235.7 205 62.4
Peaxi162Scf00108g00173 Petunia axillaris HOM05D005690 ORTHO05D007075 1.1e-56 224.2 121 86.0
Sc06g0001780 Simmondsia chinensis HOM05D005690 ORTHO05D007075 1.4e-56 223.8 120 87.5
Lj8C97T4 Lonicera japonica HOM05D005690 ORTHO05D007075 3.7e-52 209.1 121 81.0
Nitab4.5_0003072g0050 Nicotiana tabacum HOM05D005690 ORTHO05D007075 4.1e-51 205.7 186 57.0
BcaB01g03882 Brassica carinata HOM05D005690 ORTHO05D007075 1.3e-49 200.7 111 84.7
Psat1g099440 Pisum sativum HOM05D005690 ORTHO05D007075 5.5e-48 195.3 166 59.6
AagrBONN_evm.TU.Sc2ySwM_362.1612 Anthoceros agrestis HOM05D005690 ORTHO05D007075 5.1e-46 188.7 142 61.3
Mapoly0033s0041 Marchantia polymorpha HOM05D005690 ORTHO05D007075 1.2e-42 177.6 180 47.8
Pp3c10_15170 Physcomitrium patens HOM05D005690 ORTHO05D007075 5.9e-42 175.3 177 50.3
Psat2g052960 Pisum sativum HOM05D004553 ORTHO05D005426 1.6e-39 167.2 174 48.3
Mapoly0033s0042 Marchantia polymorpha HOM05D005690 ORTHO05D007075 3.9e-38 162.5 152 50.7
Lalb_Chr01g0010161 Lupinus albus HOM05D005690 ORTHO05D007075 6.7e-30 135.2 68 89.7
SMO239G0063 Selaginella moellendorffii HOM05D005690 ORTHO05D007075 3.3e-29 132.9 176 37.5
Lalb_Chr01g0010151 Lupinus albus HOM05D005690 ORTHO05D007075 3.6e-23 112.8 117 58.1
Nn2g10688 Nelumbo nucifera HOM05D005690 ORTHO05D007075 1.1e-16 91.3 102 51.0
Cre12.g540051 Chlamydomonas reinhardtii HOM05D005690 ORTHO05D007075 7.2e-16 88.6 141 32.6
CDE07G0610 Ceratophyllum demersum HOM05D005690 ORTHO05D007075 2.3e-14 83.6 123 43.9
MCO03G451 Micromonas commoda HOM05D005690 ORTHO05D007075 1.2e-13 81.3 132 35.6
HanXRQChr10g0292531 Helianthus annuus HOM05D005690 ORTHO05D007075 8.0e-07 58.5 67 52.2


User provided reference genes

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