Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01016137001 Vitis vinifera HOM05D005491 ORTHO05D006973 1.0e-182 643.3 319 100.0
Dinv20356 Davidia involucrata HOM05D005491 ORTHO05D006973 3.3e-141 505.4 329 76.3
CSS0040638 Camellia sinensis var. sinensis HOM05D005491 ORTHO05D006973 2.1e-132 476.1 321 75.4
MD09G1158800 Malus domestica HOM05D005491 ORTHO05D006973 9.2e-128 460.7 314 71.3
CANSAT01G1753 Cannabis sativa HOM05D005491 ORTHO05D006973 2.3e-126 456.1 316 71.2
vmacro17061 Vaccinium macrocarpon HOM05D005491 ORTHO05D006973 6.6e-126 454.5 332 70.2
RcHm_v2.0_Chr2g0150111 Rosa chinensis HOM05D005491 ORTHO05D006973 1.4e-123 446.8 315 70.5
Sc15g0000930 Simmondsia chinensis HOM05D005491 ORTHO05D006973 6.8e-123 444.5 318 68.2
CiPaw.02G049600 Carya illinoinensis HOM05D005491 ORTHO05D006973 7.6e-122 441.0 306 72.2
Rhsim12G0214300 Rhododendron simsii HOM05D005491 ORTHO05D006973 1.7e-121 439.9 336 68.2
FvH4_6g37280 Fragaria vesca HOM05D005491 ORTHO05D006973 2.2e-121 439.5 316 69.6
PGR102G1295 Punica granatum HOM05D005491 ORTHO05D006973 8.4e-121 437.6 316 69.6
Manes.16G045400 Manihot esculenta HOM05D005491 ORTHO05D006973 3.2e-120 435.6 318 68.6
Atru.chr1.2698 Acer truncatum HOM05D005491 ORTHO05D006973 5.4e-120 434.9 319 69.3
Ciclev10026115m.g Citrus clementina HOM05D005491 ORTHO05D006973 3.5e-119 432.2 318 68.9
FAN02G3895 Fragaria x ananassa HOM05D005491 ORTHO05D006973 2.3e-118 429.5 328 67.1
MELO3C006296.2 Cucumis melo HOM05D005491 ORTHO05D006973 3.9e-118 428.7 310 68.4
CsaV3_3G010780 Cucumis sativus L. HOM05D005491 ORTHO05D006973 5.1e-118 428.3 310 68.1
Potri.010G250200 Populus trichocarpa HOM05D005491 ORTHO05D006973 1.1e-117 427.2 321 69.5
Thecc.06G064400 Theobroma cacao HOM05D005491 ORTHO05D006973 1.1e-117 427.2 314 68.2
Eucgr.F04012 Eucalyptus grandis HOM05D005491 ORTHO05D006973 1.6e-116 423.3 315 67.6
Nn2g12576 Nelumbo nucifera HOM05D005491 ORTHO05D006973 1.6e-116 423.3 298 68.5
Hund18611 Selenicereus undatus HOM05D005491 ORTHO05D006973 1.6e-116 423.3 318 66.0
Ah.15g094670 Amaranthus hybridus HOM05D005491 ORTHO05D006973 2.8e-116 422.5 317 66.6
TAR383G0879 Trochodendron aralioides HOM05D005491 ORTHO05D006973 3.6e-116 422.2 254 78.7
Sed0027406 Sechium edule HOM05D005491 ORTHO05D006973 1.4e-115 420.2 310 66.5
FAN09G1743 Fragaria x ananassa HOM05D005491 ORTHO05D006973 1.8e-115 419.9 320 66.9
FAN14G5581 Fragaria x ananassa HOM05D005491 ORTHO05D005725 3.1e-115 419.1 320 66.9
Duzib192G0032 Durio zibethinus HOM05D005491 ORTHO05D006973 1.3e-113 413.7 312 66.7
Lj6C21T3 Lonicera japonica HOM05D005491 ORTHO05D006973 3.8e-113 412.1 318 65.1
Nitab4.5_0002885g0050 Nicotiana tabacum HOM05D005491 ORTHO05D006973 3.8e-113 412.1 304 67.8
AUR62025582 Chenopodium quinoa HOM05D005491 ORTHO05D006973 1.1e-112 410.6 325 64.0
Sed0002659 Sechium edule HOM05D005491 ORTHO05D006973 1.1e-112 410.6 311 65.3
Nitab4.5_0001691g0110 Nicotiana tabacum HOM05D005491 ORTHO05D006973 2.4e-112 409.5 304 67.1
ClCG05G003150 Citrullus lanatus HOM05D005491 ORTHO05D006973 3.5e-111 405.6 331 62.2
Lsat_1_v5_gn_4_88641 Lactuca sativa HOM05D005491 ORTHO05D006973 3.5e-111 405.6 327 62.7
Peaxi162Scf00038g02533 Petunia axillaris HOM05D005491 ORTHO05D006973 4.6e-111 405.2 315 67.0
PGSC0003DMG400009162 Solanum tuberosum HOM05D005491 ORTHO05D006973 7.9e-111 404.4 311 65.6
EL10Ac7g18224 Beta vulgaris HOM05D005491 ORTHO05D006973 1.0e-110 404.1 342 61.1
Cc04_g00370 Coffea canephora HOM05D005491 ORTHO05D006973 3.6e-108 395.6 329 64.1
Gorai.009G118600 Gossypium raimondii HOM05D005491 ORTHO05D006973 4.8e-108 395.2 314 65.6
Gohir.D05G114500 Gossypium hirsutum HOM05D005491 ORTHO05D006973 2.6e-106 389.4 314 65.3
CARHR097080 Cardamine hirsuta HOM05D005491 ORTHO05D006973 7.6e-106 387.9 315 63.5
Actinidia31136 Actinidia chinensis HOM05D005491 ORTHO05D006973 1.3e-105 387.1 339 61.9
Carub.0003s2116 Capsella rubella HOM05D005491 ORTHO05D006973 2.2e-105 386.3 315 62.9
DCAR_007669 Daucus carota HOM05D005491 ORTHO05D006973 3.8e-105 385.6 325 62.5
CAN.G790.23 Capsicum annuum HOM05D005491 ORTHO05D006973 6.4e-105 384.8 324 63.0
PSO063G4509 Papaver somniferum HOM05D005491 ORTHO05D006973 1.9e-104 383.3 337 59.6
Migut.D00894 Erythranthe guttata HOM05D005491 ORTHO05D006973 2.4e-104 382.9 328 60.7
PSO782G2961 Papaver somniferum HOM05D005491 ORTHO05D006973 2.1e-103 379.8 337 59.3
TWI18G1464 Tripterygium wilfordii HOM05D005491 ORTHO05D006973 3.5e-103 379.0 291 64.9
AL3G35200 Arabidopsis lyrata HOM05D005491 ORTHO05D006973 4.6e-103 378.6 311 63.7
Lj6A3G42 Lonicera japonica HOM05D005491 ORTHO05D006973 6.0e-103 378.3 316 61.7
Lalb_Chr04g0264721 Lupinus albus HOM05D005491 ORTHO05D006973 1.8e-102 376.7 279 66.3
Sp3g19180 Schrenkiella parvula HOM05D005491 ORTHO05D006973 1.8e-102 376.7 316 61.4
Aa31LG8G7890 Aethionema arabicum HOM05D005491 ORTHO05D006973 3.9e-102 375.6 312 62.2
Sopen03g041620 Solanum pennellii HOM05D005491 ORTHO05D006973 6.7e-102 374.8 263 68.8
A01p33690 Brassica napus HOM05D005491 ORTHO05D006973 8.7e-102 374.4 318 61.9
Thhalv10021148m.g Eutrema salsugineum HOM05D005491 ORTHO05D006973 1.1e-101 374.0 322 60.9
Thhalv10021146m.g Eutrema salsugineum HOM05D005491 ORTHO05D006973 1.5e-101 373.6 322 60.9
Solyc03g123880.3 Solanum lycopersicum HOM05D005491 ORTHO05D006973 1.5e-101 373.6 263 68.8
AT3G21200 Arabidopsis thaliana HOM05D005491 ORTHO05D006973 1.9e-101 373.2 311 63.0
BcaC09g49056 Brassica carinata HOM05D005491 ORTHO05D006973 2.5e-101 372.9 319 61.8
BraA01t03481Z Brassica rapa HOM05D005491 ORTHO05D006973 2.5e-101 372.9 318 62.3
BraA05t21640Z Brassica rapa HOM05D005491 ORTHO05D006973 2.5e-101 372.9 312 61.9
SGA_v2.0_scaffold4G02103 Striga asiatica HOM05D005491 ORTHO05D006973 2.5e-101 372.9 326 59.2
Oeu023761.1 Olea europaea HOM05D005491 ORTHO05D006973 3.3e-101 372.5 241 71.8
C01p43060 Brassica napus HOM05D005491 ORTHO05D006973 5.6e-101 371.7 319 61.8
BolC1t04253H Brassica oleracea HOM05D005491 ORTHO05D006973 5.6e-101 371.7 319 61.8
A05p27490 Brassica napus HOM05D005491 ORTHO05D006973 1.3e-100 370.5 312 60.6
BcaC05g28263 Brassica carinata HOM05D005491 ORTHO05D006973 2.1e-100 369.8 312 61.2
C05p42580 Brassica napus HOM05D005491 ORTHO05D006973 2.1e-100 369.8 312 61.2
BcaB06g26202 Brassica carinata HOM05D005491 ORTHO05D006973 2.8e-100 369.4 310 61.6
Lj3g0002967 Lotus japonicus HOM05D005491 ORTHO05D006973 8.1e-100 367.9 318 60.4
THA.LOC104817926 Tarenaya hassleriana HOM05D005491 ORTHO05D006973 8.1e-100 367.9 316 61.1
BolC5t32978H Brassica oleracea HOM05D005491 ORTHO05D006973 1.1e-99 367.5 312 60.9
arahy.Tifrunner.gnm1.ann1.5V72PU Arachis hypogaea HOM05D005491 ORTHO05D006973 3.1e-99 365.9 309 62.8
BcaB04g20605 Brassica carinata HOM05D005491 ORTHO05D006973 6.9e-99 364.8 319 61.4
arahy.Tifrunner.gnm1.ann1.PDFG4L Arachis hypogaea HOM05D005491 ORTHO05D006973 2.0e-98 363.2 309 62.5
SalBow7G0632 Salvia bowleyana HOM05D005491 ORTHO05D006973 2.6e-98 362.8 319 62.1
Aqoxy7G03200 Aquilegia oxysepala HOM05D005491 ORTHO05D006973 2.2e-97 359.8 328 58.5
MBI14_g30702_MAGBIO Magnolia biondii HOM05D005491 ORTHO05D006973 3.8e-97 359.0 401 50.4
CDE02G1684 Ceratophyllum demersum HOM05D005491 ORTHO05D006973 8.4e-97 357.8 327 56.0
Glyma.08G222600 Glycine max HOM05D005491 ORTHO05D006973 2.5e-96 356.3 271 64.9
VMungo0647G0411 Vigna mungo HOM05D005491 ORTHO05D006973 7.1e-96 354.8 275 64.4
BcaNung05297 Brassica carinata HOM05D005491 ORTHO05D006973 3.5e-95 352.4 319 59.2
AUR62001366 Chenopodium quinoa HOM05D004422 ORTHO05D007331 6.0e-95 351.7 222 73.0
Phvul.008G255600 Phaseolus vulgaris HOM05D005491 ORTHO05D006973 5.1e-94 348.6 274 63.1
Sabra10G0194700 Salix brachista HOM05D005491 ORTHO05D006973 1.1e-93 347.4 423 49.4
TPR.G38706 Trifolium pratense HOM05D005491 ORTHO05D006973 1.9e-93 346.7 318 56.9
Psat7g263520 Pisum sativum HOM05D005491 ORTHO05D006973 7.4e-93 344.7 319 56.4
Ca_20955_v3 Cicer arietinum L. HOM05D005491 ORTHO05D006973 4.1e-91 339.0 320 55.0
Medtr4g006200 Medicago truncatula HOM05D005491 ORTHO05D006973 6.9e-91 338.2 321 56.1
Gohir.A05G114100 Gossypium hirsutum HOM05D005491 ORTHO05D006973 7.6e-90 334.7 313 57.2
CDE05G1859 Ceratophyllum demersum HOM05D005491 ORTHO05D006973 2.2e-89 333.2 241 64.3
unitig_8.g3563 Utricularia gibba HOM05D006979 ORTHO05D008857 5.0e-89 332.0 271 59.0
HanXRQChr09g0277401 Helianthus annuus HOM05D005491 ORTHO05D006973 2.1e-87 326.6 285 60.4
ATR0580G202 Amborella trichopoda HOM05D005491 ORTHO05D006973 2.6e-82 309.7 244 62.3
COL.COLO4_31205 Corchorus olitorius HOM05D005491 ORTHO05D006973 1.5e-77 293.9 241 62.7
Zm00001eb319280 Zea mays HOM05D005491 ORTHO05D006973 1.0e-70 271.2 266 51.1
Actinidia00637 Actinidia chinensis HOM05D005491 ORTHO05D006973 8.8e-70 268.1 270 55.9
HPP92_013427 Vanilla planifolia HOM05D005491 ORTHO05D006973 1.1e-69 267.7 313 47.9
Haze_10760 Corylus avellana HOM05D005491 ORTHO05D006973 2.6e-66 256.5 160 76.2
ECA232G0321 Erigeron canadensis HOM05D005491 ORTHO05D006973 3.7e-60 236.1 235 53.6
Pp3c7_5080 Physcomitrium patens HOM05D005491 ORTHO05D006973 1.8e-59 233.8 244 50.4
Mapoly0005s0279 Marchantia polymorpha HOM05D005491 ORTHO05D006973 3.1e-59 233.0 247 46.2
Haze_10765 Corylus avellana HOM05D005491 ORTHO05D006973 7.0e-59 231.9 154 74.0
Cfa005563 Carpinus fangiana HOM05D005491 ORTHO05D006973 1.0e-57 228.0 154 72.7
AagrBONN_evm.TU.Sc2ySwM_368.2001 Anthoceros agrestis HOM05D005491 ORTHO05D006973 1.3e-57 227.6 246 45.9
Zm00001eb170870 Zea mays HOM05D005491 ORTHO05D006973 4.2e-56 222.6 294 42.5
Prupe.3G167000 Prunus persica HOM05D005491 ORTHO05D006973 1.5e-53 214.2 155 70.3
MSTRG.4527 Avicennia marina HOM05D005491 ORTHO05D006973 9.1e-51 204.9 130 72.3
SGA_v2.0_scaffold68G22804 Striga asiatica HOM05D005491 ORTHO05D006973 6.1e-47 192.2 192 52.1
Cpa.g.c38087 Carica papaya HOM05D005491 ORTHO05D006973 5.2e-46 189.1 153 66.7
Haze_10762 Corylus avellana HOM05D005491 ORTHO05D006973 9.8e-45 184.9 130 70.8
Potri.008G008801 Populus trichocarpa HOM05D005491 ORTHO05D006973 4.1e-35 152.9 152 59.2
arahy.Tifrunner.gnm1.ann1.S1MR2L Arachis hypogaea HOM05D005491 ORTHO05D006973 7.0e-35 152.1 91 79.1
MD17G1145100 Malus domestica HOM05D005491 ORTHO05D006973 6.2e-31 139.0 132 56.8
SMO146G0309 Selaginella moellendorffii HOM05D005491 ORTHO05D006973 5.2e-30 136.0 150 44.7
Glyma.14G098400 Glycine max HOM05D005491 ORTHO05D006973 8.9e-30 135.2 106 57.5
RcHm_v2.0_Chr3g0481151 Rosa chinensis HOM05D000090 ORTHO05D000083 2.4e-27 127.1 73 79.5
Pp3c11_26760 Physcomitrium patens HOM05D005491 ORTHO05D006973 6.0e-26 122.5 146 47.3
Cpa.g.c36201.2 Carica papaya HOM05D005491 ORTHO05D006973 8.6e-25 118.6 72 77.8
Medtr3g006055 Medicago truncatula HOM05D005491 ORTHO05D006973 2.1e-23 114.0 115 47.0
MCO13G019 Micromonas commoda HOM05D005491 ORTHO05D006973 1.5e-21 107.8 256 29.3
Medtr4g005800 Medicago truncatula HOM05D005491 ORTHO05D006973 3.4e-21 106.7 97 51.5
SEGI_08052 Sequoiadendron giganteum HOM05D005491 ORTHO05D006973 7.5e-21 105.5 100 52.0
Gorai.002G157400 Gossypium raimondii HOM05D005491 ORTHO05D006973 3.0e-17 93.6 106 50.9
Gohir.D01G126833 Gossypium hirsutum HOM05D005491 ORTHO05D006973 3.9e-17 93.2 106 50.0
CBR_g22384 Chara braunii HOM05D005491 ORTHO05D006973 9.5e-16 88.6 189 33.3
SEGI_00240 Sequoiadendron giganteum HOM05D005491 ORTHO05D006973 9.5e-16 88.6 123 39.8
Gohir.D06G077900 Gossypium hirsutum HOM05D005491 ORTHO05D006973 3.6e-15 86.7 103 54.4
Cre03.g156600 Chlamydomonas reinhardtii HOM05D005491 ORTHO05D006973 8.1e-15 85.5 245 28.2
Gorai.013G054800 Gossypium raimondii HOM05D005491 ORTHO05D006973 1.1e-14 85.1 49 79.6
Gorai.003G079200 Gossypium raimondii HOM05D005491 ORTHO05D006973 1.4e-14 84.7 89 50.6
Gorai.012G122800 Gossypium raimondii HOM05D005491 ORTHO05D006973 4.0e-14 83.2 49 73.5
Nn6g35127 Nelumbo nucifera HOM05D005491 ORTHO05D006973 6.8e-14 82.4 116 45.7
PRCOL_00005430 Prasinoderma coloniale HOM05D005491 ORTHO05D006973 6.8e-14 82.4 238 29.8
FAN14G3055 Fragaria x ananassa HOM05D002283 ORTHO05D005725 3.2e-11 73.6 63 60.3
FvH4_6g36141 Fragaria vesca HOM05D002283 ORTHO05D005725 2.3e-09 67.4 84 51.2
CANSAT78G0686 Cannabis sativa HOM05D006013 ORTHO05D007383 1.1e-08 65.1 260 26.9
Cre02.g098250 Chlamydomonas reinhardtii HOM05D006013 ORTHO05D007383 2.5e-08 63.9 246 25.2
Eucgr.K01500 Eucalyptus grandis HOM05D006013 ORTHO05D007383 5.6e-08 62.8 305 25.6
Nitab4.5_0000394g0050 Nicotiana tabacum HOM05D006013 ORTHO05D007383 9.6e-08 62.0 259 27.4
Prupe.7G004600 Prunus persica HOM05D006013 ORTHO05D007383 9.6e-08 62.0 297 25.3
CBR_g45943 Chara braunii HOM05D006013 ORTHO05D007383 2.1e-07 60.8 244 21.7
Aqoxy2G00451 Aquilegia oxysepala HOM05D006013 ORTHO05D007383 6.2e-07 59.3 259 26.6
TPR.G5910 Trifolium pratense HOM05D006013 ORTHO05D007383 3.1e-06 57.0 268 27.2


User provided reference genes

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