Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01016073001 Vitis vinifera HOM05D000458 ORTHO05D014366 5.8e-68 260.8 131 100.0
CiPaw.01G051500 Carya illinoinensis HOM05D000458 ORTHO05D000951 2.5e-31 139.0 126 57.9
Lj5A83G38 Lonicera japonica HOM05D000458 ORTHO05D000951 5.6e-31 137.9 116 61.2
Thecc.06G133400 Theobroma cacao HOM05D000458 ORTHO05D000951 3.6e-30 135.2 124 56.5
Manes.04G098600 Manihot esculenta HOM05D000458 ORTHO05D000951 6.2e-30 134.4 122 59.8
Haze_15241 Corylus avellana HOM05D000458 ORTHO05D000951 1.1e-29 133.7 125 54.4
TAR383G0841 Trochodendron aralioides HOM05D000458 ORTHO05D000951 4.0e-29 131.7 124 55.6
TAR585G0001 Trochodendron aralioides HOM05D000458 ORTHO05D000951 5.3e-29 131.3 124 56.5
COL.COLO4_30899 Corchorus olitorius HOM05D000458 ORTHO05D000951 6.9e-29 131.0 122 57.4
Hma1.2p1_1774F.1_g301810 Hydrangea macrophylla HOM05D000458 ORTHO05D014366 6.9e-29 131.0 105 62.9
Manes.11G070900 Manihot esculenta HOM05D000458 ORTHO05D000951 1.5e-28 129.8 124 55.6
Gorai.011G053300 Gossypium raimondii HOM05D000458 ORTHO05D000951 2.0e-28 129.4 125 58.4
Gohir.A10G049200 Gossypium hirsutum HOM05D000458 ORTHO05D000951 3.4e-28 128.6 124 58.1
Lj9C490T6 Lonicera japonica HOM05D000458 ORTHO05D014366 4.5e-28 128.3 107 59.8
CSS0026060 Camellia sinensis var. sinensis HOM05D000458 ORTHO05D000951 9.9e-28 127.1 123 56.9
Atru.chr1.2824 Acer truncatum HOM05D000458 ORTHO05D000951 1.3e-27 126.7 124 56.5
Gohir.A05G143300 Gossypium hirsutum HOM05D000458 ORTHO05D000951 1.3e-27 126.7 127 55.1
Glyma.07G002900 Glycine max HOM05D000458 ORTHO05D000951 1.7e-27 126.3 124 54.8
Glyma.08G223700 Glycine max HOM05D000458 ORTHO05D000951 2.2e-27 125.9 122 54.1
Ciclev10025035m.g Citrus clementina HOM05D000458 ORTHO05D000951 8.4e-27 124.0 107 57.0
Rhsim08G0201300 Rhododendron simsii HOM05D000696 ORTHO05D003201 1.9e-26 122.9 122 55.7
Medtr4g005730 Medicago truncatula HOM05D000458 ORTHO05D000951 4.2e-26 121.7 125 55.2
TPR.G38829 Trifolium pratense HOM05D000458 ORTHO05D000951 4.2e-26 121.7 125 55.2
Gohir.D05G145700 Gossypium hirsutum HOM05D000458 ORTHO05D000951 5.5e-26 121.3 135 51.1
Gorai.009G149600 Gossypium raimondii HOM05D000458 ORTHO05D000951 5.5e-26 121.3 135 51.1
Potri.001G037900 Populus trichocarpa HOM05D000458 ORTHO05D000951 7.1e-26 120.9 110 58.2
Actinidia36858 Actinidia chinensis HOM05D000458 ORTHO05D000951 9.3e-26 120.6 117 55.6
Duzib160G0242 Durio zibethinus HOM05D000458 ORTHO05D000951 1.6e-25 119.8 122 51.6
Oeu012868.2 Olea europaea HOM05D000458 ORTHO05D014366 1.6e-25 119.8 123 52.8
MSTRG.22835 Avicennia marina HOM05D000458 ORTHO05D000951 2.7e-25 119.0 116 52.6
Ca_20963_v3 Cicer arietinum L. HOM05D000458 ORTHO05D000951 7.9e-25 117.5 118 53.4
DCAR_016321 Daucus carota HOM05D000696 ORTHO05D003201 7.9e-25 117.5 122 55.7
QL05p081629 Quercus lobata HOM05D000458 ORTHO05D000951 1.0e-24 117.1 119 49.6
Phvul.010G163200 Phaseolus vulgaris HOM05D000458 ORTHO05D000951 2.3e-24 115.9 124 52.4
Duzib235G0578 Durio zibethinus HOM05D000458 ORTHO05D000951 5.1e-24 114.8 128 50.8
Eucgr.F03991 Eucalyptus grandis HOM05D000458 ORTHO05D000951 5.1e-24 114.8 106 54.7
Potri.003G186700 Populus trichocarpa HOM05D000458 ORTHO05D000951 6.7e-24 114.4 122 54.9
TWI75G0382 Tripterygium wilfordii HOM05D000458 ORTHO05D000951 6.7e-24 114.4 122 51.6
Lj3g0027480 Lotus japonicus HOM05D000458 ORTHO05D000951 1.1e-23 113.6 124 50.0
Psat7g264440 Pisum sativum HOM05D000458 ORTHO05D000951 1.9e-23 112.8 119 52.9
VMungo0331G0511 Vigna mungo HOM05D000458 ORTHO05D000951 4.3e-23 111.7 123 52.0
Sabra03G0136800 Salix brachista HOM05D000458 ORTHO05D000951 7.4e-23 110.9 122 52.5
THA.LOC104808159 Tarenaya hassleriana HOM05D000458 ORTHO05D000951 7.4e-23 110.9 125 52.0
Lalb_Chr25g0278571 Lupinus albus HOM05D000458 ORTHO05D000951 9.6e-23 110.5 126 50.0
MBI14_g48285_MAGBIO Magnolia biondii HOM05D000458 ORTHO05D014366 2.1e-22 109.4 117 48.7
TWI79G1061 Tripterygium wilfordii HOM05D000458 ORTHO05D000951 4.8e-22 108.2 127 50.4
Actinidia25492 Actinidia chinensis HOM05D000458 ORTHO05D000951 1.1e-21 107.1 110 53.6
BolC6t40364H Brassica oleracea HOM05D000458 ORTHO05D000951 2.4e-21 105.9 126 48.4
PGSC0003DMG402014218 Solanum tuberosum HOM05D000458 ORTHO05D000951 4.0e-21 105.1 122 47.5
Thhalv10018218m.g Eutrema salsugineum HOM05D000458 ORTHO05D000951 5.3e-21 104.8 125 49.6
Cc04_g05430 Coffea canephora HOM05D000458 ORTHO05D014366 6.9e-21 104.4 117 47.9
Carub.0002s2652 Capsella rubella HOM05D000458 ORTHO05D000951 9.0e-21 104.0 115 51.3
AT1G79640 Arabidopsis thaliana HOM05D000458 ORTHO05D000951 1.5e-20 103.2 106 51.9
Sopen03g036700 Solanum pennellii HOM05D000458 ORTHO05D000951 1.5e-20 103.2 122 46.7
CARHR073370 Cardamine hirsuta HOM05D000458 ORTHO05D000951 2.0e-20 102.8 117 50.4
Solyc03g117790.2 Solanum lycopersicum HOM05D000458 ORTHO05D000951 2.0e-20 102.8 122 46.7
BcaC08g47523 Brassica carinata HOM05D000458 ORTHO05D000951 2.6e-20 102.4 125 48.0
C06p29760 Brassica napus HOM05D000458 ORTHO05D000951 2.6e-20 102.4 116 48.3
BolC6t38137H Brassica oleracea HOM05D000458 ORTHO05D000951 2.6e-20 102.4 116 48.3
Sp5g34710 Schrenkiella parvula HOM05D000458 ORTHO05D000951 2.6e-20 102.4 118 50.0
AL2G40330 Arabidopsis lyrata HOM05D000458 ORTHO05D000951 4.5e-20 101.7 112 50.0
BcaNung04175 Brassica carinata HOM05D000458 ORTHO05D000951 4.5e-20 101.7 117 47.9
BraA07t31974Z Brassica rapa HOM05D000458 ORTHO05D000951 5.8e-20 101.3 126 48.4
A07p44650 Brassica napus HOM05D000458 ORTHO05D000951 7.6e-20 100.9 124 48.4
C06p53490 Brassica napus HOM05D000458 ORTHO05D000951 1.0e-19 100.5 124 47.6
A07p27030 Brassica napus HOM05D000458 ORTHO05D000951 1.3e-19 100.1 116 46.6
BraA07t30347Z Brassica rapa HOM05D000458 ORTHO05D000951 1.3e-19 100.1 116 46.6
CAN.G1008.17 Capsicum annuum HOM05D000458 ORTHO05D000951 2.2e-19 99.4 118 46.6
HanXRQChr08g0235901 Helianthus annuus HOM05D000458 ORTHO05D000951 2.2e-19 99.4 97 52.6
Nitab4.5_0004553g0020 Nicotiana tabacum HOM05D000458 ORTHO05D000951 2.9e-19 99.0 106 50.0
Peaxi162Scf00314g00922 Petunia axillaris HOM05D000458 ORTHO05D000951 2.9e-19 99.0 107 49.5
Aa31LG4G1330 Aethionema arabicum HOM05D000458 ORTHO05D000951 4.9e-19 98.2 109 49.5
CSS0027576 Camellia sinensis var. sinensis HOM05D000458 ORTHO05D000951 6.5e-19 97.8 124 46.8
CANSAT64G1211 Cannabis sativa HOM05D000458 ORTHO05D000951 6.5e-19 97.8 125 46.4
Cpa.g.sc167.18 Carica papaya HOM05D000458 ORTHO05D000951 6.5e-19 97.8 105 51.4
BcaB02g07229 Brassica carinata HOM05D000458 ORTHO05D000951 8.4e-19 97.4 117 47.0
vmacro19083 Vaccinium macrocarpon HOM05D000458 ORTHO05D000951 8.4e-19 97.4 156 40.4
DCAR_021378 Daucus carota HOM05D000478 ORTHO05D000345 1.4e-18 96.7 143 44.8
ClCG10G012850 Citrullus lanatus HOM05D000458 ORTHO05D000951 1.9e-18 96.3 124 47.6
Nitab4.5_0004194g0010 Nicotiana tabacum HOM05D000458 ORTHO05D000951 1.9e-18 96.3 106 48.1
CsaV3_3G032690 Cucumis sativus L. HOM05D000458 ORTHO05D000951 2.5e-18 95.9 129 46.5
PSO063G4714 Papaver somniferum HOM05D000458 ORTHO05D000951 3.2e-18 95.5 90 53.3
arahy.Tifrunner.gnm1.ann1.YP3YKY Arachis hypogaea HOM05D000458 ORTHO05D000951 4.2e-18 95.1 97 54.6
MBI14_g41163_MAGBIO Magnolia biondii HOM05D000458 ORTHO05D014366 7.1e-18 94.4 95 47.4
arahy.Tifrunner.gnm1.ann1.0HP51M Arachis hypogaea HOM05D000458 ORTHO05D000951 9.3e-18 94.0 97 53.6
Migut.I00637 Erythranthe guttata HOM05D000458 ORTHO05D000951 9.3e-18 94.0 126 43.7
Sed0017073 Sechium edule HOM05D000458 ORTHO05D000951 1.6e-17 93.2 114 47.4
ATR0580G139 Amborella trichopoda HOM05D000458 ORTHO05D014366 3.5e-17 92.0 137 41.6
Sed0012490 Sechium edule HOM05D000458 ORTHO05D000951 3.5e-17 92.0 120 46.7
RcHm_v2.0_Chr2g0131781 Rosa chinensis HOM05D000458 ORTHO05D000951 4.6e-17 91.7 128 43.8
HPP92_017163 Vanilla planifolia HOM05D000458 ORTHO05D000951 6.0e-17 91.3 89 48.3
Nitab4.5_0004576g0050 Nicotiana tabacum HOM05D000458 ORTHO05D000951 7.9e-17 90.9 104 45.2
PSO782G4144 Papaver somniferum HOM05D000458 ORTHO05D000951 1.0e-16 90.5 107 48.6
Sopen06g025850 Solanum pennellii HOM05D000458 ORTHO05D000951 1.0e-16 90.5 104 45.2
MD17G1228700 Malus domestica HOM05D000458 ORTHO05D000951 1.3e-16 90.1 127 43.3
Nitab4.5_0010280g0010 Nicotiana tabacum HOM05D000458 ORTHO05D000951 1.3e-16 90.1 104 45.2
PGR102G2498 Punica granatum HOM05D000458 ORTHO05D000951 1.3e-16 90.1 106 47.2
ECA246G0758 Erigeron canadensis HOM05D000458 ORTHO05D000951 1.8e-16 89.7 124 41.9
Zm00001eb257600 Zea mays HOM05D000458 ORTHO05D000951 1.5e-15 86.7 128 43.0
Peaxi162Scf00207g00339 Petunia axillaris HOM05D000458 ORTHO05D000951 1.9e-15 86.3 141 37.6
Lsat_1_v5_gn_5_9141 Lactuca sativa HOM05D000458 ORTHO05D000951 3.3e-15 85.5 120 43.3
Sc10g0008470 Simmondsia chinensis HOM05D000458 ORTHO05D000951 2.8e-14 82.4 105 43.8
Os02g0791700 Oryza sativa ssp. japonica HOM05D000458 ORTHO05D000951 8.2e-14 80.9 130 40.0
unitig_22.g6278 Utricularia gibba HOM05D000458 ORTHO05D014366 1.4e-13 80.1 107 45.8
AUR62040632 Chenopodium quinoa HOM05D000458 ORTHO05D000951 9.0e-13 77.4 120 38.3
Aa31LG7G740 Aethionema arabicum HOM05D000458 ORTHO05D000951 2.6e-12 75.9 114 39.5
CAN.G1503.15 Capsicum annuum HOM05D000458 ORTHO05D000951 1.3e-11 73.6 116 39.7
Rhsim12G0183200 Rhododendron simsii HOM05D000458 ORTHO05D000951 1.3e-11 73.6 126 39.7
HanXRQChr02g0033731 Helianthus annuus HOM05D000458 ORTHO05D000951 1.9e-10 69.7 108 38.0
CSS0042689 Camellia sinensis var. sinensis HOM05D035626 ORTHO05D014366 1.6e-09 66.6 40 72.5
CSS0042600 Camellia sinensis var. sinensis HOM05D035626 ORTHO05D014366 2.1e-09 66.2 40 70.0
PSO017G5882 Papaver somniferum HOM05D000458 ORTHO05D000951 2.1e-09 66.2 116 40.5
THA.LOC104813596 Tarenaya hassleriana HOM05D000458 ORTHO05D000951 4.6e-09 65.1 107 38.3
PSO170G2905 Papaver somniferum HOM05D000458 ORTHO05D000951 6.1e-09 64.7 113 39.8
Zm00001eb192580 Zea mays HOM05D000458 ORTHO05D000951 1.0e-08 63.9 44 65.9
FvH4_6g28050 Fragaria vesca HOM05D000458 ORTHO05D000951 3.9e-08 62.0 108 39.8
FAN14G3713 Fragaria x ananassa HOM05D000458 ORTHO05D000951 3.9e-08 62.0 108 39.8
SGA_v2.0_scaffold5G02833 Striga asiatica HOM05D000458 ORTHO05D000951 4.3e-07 58.5 102 38.2
Rhsim08G0139700 Rhododendron simsii HOM05D001206 ORTHO05D014366 2.2e-06 56.2 38 71.1
HanXRQChr04g0099991 Helianthus annuus HOM05D000458 ORTHO05D000951 2.8e-06 55.8 124 33.1
Lsat_1_v5_gn_1_30741 Lactuca sativa HOM05D000458 ORTHO05D000951 2.8e-06 55.8 44 59.1
Solyc06g068590.4 Solanum lycopersicum HOM05D000458 ORTHO05D000951 2.8e-06 55.8 69 40.6
ECA247G2745 Erigeron canadensis HOM05D000458 ORTHO05D000951 3.7e-06 55.5 88 36.4
Prupe.3G106100 Prunus persica HOM05D000458 ORTHO05D000951 3.7e-06 55.5 83 43.4
FAN09G1841 Fragaria x ananassa HOM05D000458 ORTHO05D000951 4.8e-06 55.1 85 38.8


User provided reference genes

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